Wall clock time and date at job start Fri Apr 10 2020 18:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.46501 * 120.00398 * 2 1 4 4 C 1.52998 * 109.46923 * 90.00528 * 3 2 1 5 5 N 1.46501 * 109.46997 * 180.02562 * 4 3 2 6 6 C 1.36938 * 119.99804 * 180.02562 * 5 4 3 7 7 H 1.08005 * 119.99974 * 359.97438 * 6 5 4 8 8 C 1.38810 * 119.99797 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99898 * 179.97438 * 8 6 5 10 10 Si 1.86797 * 120.00064 * 359.97438 * 8 6 5 11 11 H 1.48506 * 109.46936 * 90.00237 * 10 8 6 12 12 H 1.48502 * 109.46906 * 209.99624 * 10 8 6 13 13 H 1.48492 * 109.47081 * 330.00192 * 10 8 6 14 14 C 1.34780 * 119.99910 * 180.02562 * 2 1 3 15 15 O 1.21574 * 120.00162 * 187.03254 * 14 2 1 16 16 C 1.47612 * 119.99598 * 7.02376 * 14 2 1 17 17 C 1.39723 * 120.05804 * 20.58651 * 16 14 2 18 18 C 1.37849 * 120.11278 * 179.97438 * 17 16 14 19 19 C 1.38695 * 120.07205 * 0.04183 * 18 17 16 20 20 C 1.39678 * 120.10032 * 359.97438 * 19 18 17 21 21 C 1.38084 * 120.12230 * 359.67655 * 20 19 18 22 22 N 1.40271 * 119.24749 * 179.91759 * 20 19 18 23 23 C 1.35096 * 118.96405 * 15.53949 * 22 20 19 24 24 O 1.21291 * 120.13578 * 181.67462 * 23 22 20 25 25 C 1.50751 * 119.71473 * 1.64564 * 23 22 20 26 26 O 1.35854 * 120.51315 * 180.02562 * 19 18 17 27 27 H 1.08994 * 109.47279 * 87.02354 * 1 2 3 28 28 H 1.08993 * 109.47177 * 207.02783 * 1 2 3 29 29 H 1.08998 * 109.46730 * 327.02498 * 1 2 3 30 30 H 1.08999 * 109.47385 * 210.00657 * 3 2 1 31 31 H 1.09002 * 109.46911 * 330.00613 * 3 2 1 32 32 H 1.09008 * 109.47143 * 299.99978 * 4 3 2 33 33 H 1.08995 * 109.47502 * 60.00017 * 4 3 2 34 34 H 0.96997 * 120.00085 * 359.97438 * 5 4 3 35 35 H 0.97003 * 119.99820 * 179.97438 * 9 8 6 36 36 H 1.07998 * 119.94390 * 359.95774 * 17 16 14 37 37 H 1.07997 * 119.96302 * 180.02562 * 18 17 16 38 38 H 1.08008 * 120.15190 * 180.33074 * 21 20 19 39 39 H 0.96999 * 120.52207 * 195.51290 * 22 20 19 40 40 H 1.09007 * 109.43989 * 208.55176 * 25 23 22 41 41 H 1.09002 * 109.41255 * 88.64898 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4527 1.7102 1.4425 5 7 3.1848 2.9792 1.4425 6 6 3.5276 3.5718 2.6285 7 1 3.2579 3.1039 3.5638 8 6 4.2217 4.7739 2.6285 9 7 4.5508 5.3438 3.7684 10 14 4.6887 5.5828 1.0108 11 1 3.5999 6.4973 0.5822 12 1 5.9437 6.3565 1.1885 13 1 4.8936 4.5379 -0.0241 14 6 2.1389 -1.1672 -0.0005 15 8 3.3478 -1.1713 0.1284 16 6 1.4090 -2.4407 -0.1574 17 6 0.1313 -2.4499 -0.7228 18 6 -0.5511 -3.6386 -0.8703 19 6 0.0288 -4.8287 -0.4570 20 6 1.3056 -4.8263 0.1093 21 6 1.9976 -3.6401 0.2534 22 7 1.8743 -6.0401 0.5227 23 6 1.3324 -7.1984 0.0870 24 8 1.7881 -8.2604 0.4553 25 6 0.1586 -7.1653 -0.8583 26 8 -0.6355 -6.0053 -0.5986 27 1 -0.3633 0.0534 -1.0262 28 1 -0.3633 -0.9154 0.4670 29 1 -0.3633 0.8621 0.5593 30 1 3.1500 1.1384 -0.5139 31 1 1.6085 2.0284 -0.5138 32 1 1.5003 1.8406 1.9564 33 1 3.0417 0.9506 1.9563 34 1 3.4273 3.3992 0.6025 35 1 5.0361 6.1837 3.7684 36 1 -0.3225 -1.5243 -1.0445 37 1 -1.5384 -3.6430 -1.3080 38 1 2.9871 -3.6384 0.6863 39 1 2.6448 -6.0478 1.1119 40 1 -0.4478 -8.0597 -0.7153 41 1 0.5215 -7.1335 -1.8856 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001691351578.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:57 Heat of formation + Delta-G solvation = -56.075965 kcal Electronic energy + Delta-G solvation = -25829.110846 eV Core-core repulsion = 21903.074574 eV Total energy + Delta-G solvation = -3926.036273 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.136 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.61530 -41.31474 -39.83314 -38.42050 -37.52324 -36.60877 -35.98479 -33.71022 -32.07173 -31.39131 -30.07117 -28.80255 -27.90985 -25.94624 -24.72054 -24.00637 -23.23245 -21.79425 -20.54432 -19.89317 -19.63985 -19.18664 -18.32671 -17.54404 -17.36652 -17.16971 -16.67184 -16.50286 -16.10130 -15.85102 -15.64272 -15.56648 -15.18126 -15.00263 -14.93912 -14.69174 -14.44693 -14.18356 -14.05286 -13.78693 -13.45329 -13.00089 -12.87301 -12.83678 -12.43491 -12.35628 -12.12943 -12.04615 -11.84689 -11.80681 -11.36828 -11.03038 -10.97509 -9.92595 -9.67128 -9.37040 -9.12173 -8.05697 -5.41727 -0.39240 0.01424 1.06461 1.37827 1.43133 1.50202 1.57315 1.67153 1.92334 2.18316 2.47430 2.64905 2.84636 3.25066 3.37296 3.48992 3.72908 3.95614 4.00503 4.03750 4.07627 4.14410 4.17716 4.27278 4.43274 4.54190 4.63979 4.68646 4.78523 4.91039 4.97249 5.01287 5.07214 5.18610 5.32755 5.36481 5.50121 5.64061 5.70652 6.11461 6.17057 6.33196 6.58346 7.02410 7.07057 7.76201 7.98004 9.15689 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.029258 B = 0.002339 C = 0.002243 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.757438 B =11967.264203 C =12478.977861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.050 3.950 2 N -0.602 5.602 3 C 0.118 3.882 4 C 0.147 3.853 5 N -0.754 5.754 6 C -0.242 4.242 7 H 0.050 0.950 8 C -0.065 4.065 9 N -0.984 5.984 10 Si 0.963 3.037 11 H -0.267 1.267 12 H -0.296 1.296 13 H -0.252 1.252 14 C 0.549 3.451 15 O -0.583 6.583 16 C -0.137 4.137 17 C -0.077 4.077 18 C -0.103 4.103 19 C 0.100 3.900 20 C 0.074 3.926 21 C -0.074 4.074 22 N -0.660 5.660 23 C 0.487 3.513 24 O -0.551 6.551 25 C 0.053 3.947 26 O -0.299 6.299 27 H 0.105 0.895 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.067 0.933 31 H 0.114 0.886 32 H 0.035 0.965 33 H -0.001 1.001 34 H 0.369 0.631 35 H 0.260 0.740 36 H 0.193 0.807 37 H 0.183 0.817 38 H 0.129 0.871 39 H 0.419 0.581 40 H 0.172 0.828 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.392 -23.413 -17.734 34.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 N -0.333 5.333 3 C -0.005 4.005 4 C 0.020 3.980 5 N -0.401 5.401 6 C -0.373 4.373 7 H 0.068 0.932 8 C -0.257 4.257 9 N -0.634 5.634 10 Si 0.789 3.211 11 H -0.193 1.193 12 H -0.223 1.223 13 H -0.176 1.176 14 C 0.339 3.661 15 O -0.464 6.464 16 C -0.141 4.141 17 C -0.096 4.096 18 C -0.122 4.122 19 C 0.053 3.947 20 C -0.021 4.021 21 C -0.096 4.096 22 N -0.307 5.307 23 C 0.275 3.725 24 O -0.428 6.428 25 C -0.024 4.024 26 O -0.213 6.213 27 H 0.123 0.877 28 H 0.119 0.881 29 H 0.100 0.900 30 H 0.085 0.915 31 H 0.132 0.868 32 H 0.053 0.947 33 H 0.017 0.983 34 H 0.203 0.797 35 H 0.069 0.931 36 H 0.210 0.790 37 H 0.201 0.799 38 H 0.147 0.853 39 H 0.258 0.742 40 H 0.189 0.811 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.891 -24.085 -17.339 34.652 hybrid contribution 1.876 0.646 0.503 2.047 sum -16.015 -23.439 -16.835 33.004 Atomic orbital electron populations 1.22890 0.76511 1.05378 1.04269 1.47693 1.08876 1.04541 1.72191 1.21490 0.97992 0.85323 0.95696 1.20983 0.94441 0.86004 0.96602 1.42499 1.69042 1.24387 1.04152 1.18976 1.29461 1.02767 0.86112 0.93200 1.25626 1.00702 0.98480 1.00852 1.69904 1.46184 1.20312 1.26950 0.85297 0.77618 0.78653 0.79542 1.19252 1.22262 1.17644 1.18742 0.86626 0.84671 0.76015 1.90807 1.16457 1.87719 1.51413 1.19530 0.96916 0.91373 1.06267 1.22480 0.91349 1.00799 0.94925 1.20894 1.02961 0.87912 1.00390 1.19167 0.89313 0.88053 0.98199 1.17874 0.94225 0.86073 1.03953 1.20608 0.99559 0.89843 0.99560 1.43849 1.33717 1.04201 1.48936 1.22184 0.85522 0.82733 0.82021 1.90815 1.63942 1.30137 1.57902 1.23482 0.90390 0.89494 0.99008 1.86219 1.33802 1.13654 1.87626 0.87711 0.88075 0.90035 0.91480 0.86816 0.94681 0.98259 0.79695 0.93142 0.79025 0.79944 0.85341 0.74185 0.81117 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.55 8.64 127.77 1.10 1.65 16 2 N -0.60 -13.67 2.87 -850.48 -2.44 -16.12 16 3 C 0.12 3.41 5.48 86.38 0.47 3.89 16 4 C 0.15 5.85 6.58 86.38 0.57 6.41 16 5 N -0.75 -36.32 5.41 -343.45 -1.86 -38.17 16 6 C -0.24 -14.36 10.47 84.03 0.88 -13.48 16 7 H 0.05 3.27 8.06 -2.91 -0.02 3.25 16 8 C -0.07 -3.92 5.50 84.86 0.47 -3.45 16 9 N -0.98 -64.18 13.97 21.65 0.30 -63.88 16 10 Si 0.96 45.51 27.73 68.60 1.90 47.41 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 12 H -0.30 -14.21 7.11 99.48 0.71 -13.51 16 13 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 14 C 0.55 14.93 7.50 86.72 0.65 15.59 16 15 O -0.58 -22.08 16.18 -3.95 -0.06 -22.14 16 16 C -0.14 -2.61 5.56 -20.07 -0.11 -2.72 16 17 C -0.08 -0.77 7.60 22.54 0.17 -0.60 16 18 C -0.10 -0.82 9.98 22.29 0.22 -0.59 16 19 C 0.10 1.26 6.45 22.73 0.15 1.41 16 20 C 0.07 1.21 6.54 38.10 0.25 1.46 16 21 C -0.07 -1.47 9.48 22.61 0.21 -1.26 16 22 N -0.66 -10.91 5.47 -302.75 -1.66 -12.57 16 23 C 0.49 8.10 7.94 87.62 0.70 8.80 16 24 O -0.55 -13.13 17.95 -3.06 -0.06 -13.19 16 25 C 0.05 0.45 7.16 71.25 0.51 0.96 16 26 O -0.30 -3.29 10.44 -91.91 -0.96 -4.24 16 27 H 0.10 0.38 6.94 -2.39 -0.02 0.36 16 28 H 0.10 0.83 5.33 -2.39 -0.01 0.82 16 29 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 30 H 0.07 2.20 7.53 -2.39 -0.02 2.18 16 31 H 0.11 2.54 8.07 -2.39 -0.02 2.52 16 32 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 34 H 0.37 16.44 5.53 -92.71 -0.51 15.93 16 35 H 0.26 16.02 8.31 -92.71 -0.77 15.25 16 36 H 0.19 0.74 4.01 -2.91 -0.01 0.73 16 37 H 0.18 0.23 8.06 -2.91 -0.02 0.20 16 38 H 0.13 2.91 7.78 -2.91 -0.02 2.89 16 39 H 0.42 6.56 8.89 -92.71 -0.82 5.74 16 40 H 0.17 0.65 8.14 -2.38 -0.02 0.64 16 41 H 0.13 0.49 8.14 -2.39 -0.02 0.47 16 Total: -1.00 -87.62 344.84 1.12 -86.50 By element: Atomic # 1 Polarization: 18.62 SS G_CDS: -0.29 Total: 18.33 kcal Atomic # 6 Polarization: 11.82 SS G_CDS: 6.24 Total: 18.06 kcal Atomic # 7 Polarization: -125.08 SS G_CDS: -5.66 Total: -130.74 kcal Atomic # 8 Polarization: -38.49 SS G_CDS: -1.08 Total: -39.57 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 1.90 Total: 47.41 kcal Total: -87.62 1.12 -86.50 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001691351578.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.427 kcal (2) G-P(sol) polarization free energy of solvation -87.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.076 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds