Wall clock time and date at job start Fri Apr 10 2020 18:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99530 * 2 1 4 4 H 1.48494 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46782 * 300.00035 * 3 2 1 6 6 H 1.48495 * 109.47263 * 60.00271 * 3 2 1 7 7 C 1.38949 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99807 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00088 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99731 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00342 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.48562 * 111.00344 * 69.87242 * 13 12 10 15 15 C 1.54379 * 104.69842 * 159.09785 * 14 13 12 16 16 C 1.54257 * 105.06256 * 336.08765 * 15 14 13 17 17 H 1.08997 * 110.32124 * 118.89793 * 16 15 14 18 18 N 1.46500 * 110.32527 * 241.00222 * 16 15 14 19 19 C 1.34779 * 119.99890 * 273.54862 * 18 16 15 20 20 O 1.21464 * 119.99872 * 359.97438 * 19 18 16 21 21 C 1.48540 * 119.99541 * 179.97438 * 19 18 16 22 22 N 1.32457 * 119.19111 * 359.72805 * 21 19 18 23 23 C 1.32106 * 120.77289 * 179.76158 * 22 21 19 24 24 C 1.38802 * 119.16011 * 0.49998 * 23 22 21 25 25 C 1.38803 * 118.50905 * 359.75433 * 24 23 22 26 26 N 1.32109 * 119.16215 * 359.97438 * 25 24 23 27 27 C 1.48856 * 111.13147 * 185.19362 * 13 12 10 28 28 H 0.96997 * 120.00263 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99600 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46872 * 59.99583 * 12 10 9 31 31 H 1.09003 * 109.46709 * 299.99472 * 12 10 9 32 32 H 1.09002 * 110.41176 * 40.25880 * 14 13 12 33 33 H 1.09002 * 110.41204 * 277.93787 * 14 13 12 34 34 H 1.08998 * 110.32365 * 94.98307 * 15 14 13 35 35 H 1.09002 * 110.32581 * 217.19029 * 15 14 13 36 36 H 0.96996 * 119.99855 * 93.54349 * 18 16 15 37 37 H 1.08002 * 120.42264 * 180.26160 * 23 22 21 38 38 H 1.08002 * 120.74806 * 179.76890 * 24 23 22 39 39 H 1.07992 * 120.41947 * 180.02562 * 25 24 23 40 40 H 1.09003 * 110.39541 * 82.21242 * 27 13 12 41 41 H 1.08998 * 110.39292 * 319.79096 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1987 -5.9794 -0.0016 14 6 2.9075 -6.0745 1.3006 15 6 3.4298 -7.5261 1.3571 16 6 2.5016 -8.3230 0.4175 17 1 3.0752 -8.7603 -0.3997 18 7 1.8003 -9.3708 1.1634 19 6 2.3793 -10.5751 1.3397 20 8 3.4824 -10.7917 0.8797 21 6 1.6684 -11.6372 2.0966 22 7 0.4685 -11.3818 2.5959 23 6 -0.1936 -12.3049 3.2701 24 6 0.3881 -13.5506 3.4609 25 6 1.6488 -13.7817 2.9281 26 7 2.2522 -12.8150 2.2597 27 6 1.4965 -7.2858 -0.1279 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6177 -4.9205 -0.8913 31 1 0.6171 -4.9209 0.8887 32 1 2.2178 -5.8863 2.1234 33 1 3.7385 -5.3699 1.3334 34 1 4.4589 -7.5723 1.0011 35 1 3.3623 -7.9135 2.3738 36 1 0.9193 -9.1979 1.5305 37 1 -1.1735 -12.0918 3.6712 38 1 -0.1287 -14.3230 4.0112 39 1 2.1300 -14.7397 3.0577 40 1 1.2653 -7.4934 -1.1727 41 1 0.5861 -7.2872 0.4714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001698554037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:05 Heat of formation + Delta-G solvation = 1.692146 kcal Electronic energy + Delta-G solvation = -25442.858580 eV Core-core repulsion = 21551.620072 eV Total energy + Delta-G solvation = -3891.238508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.68607 -39.95088 -38.72356 -37.45549 -34.84127 -34.13866 -33.75997 -32.80198 -31.34049 -30.78006 -28.56869 -26.79039 -25.56409 -25.03638 -24.14375 -21.89785 -21.33930 -20.44866 -19.13215 -18.79864 -18.07524 -17.83161 -16.61870 -16.52436 -15.97722 -15.89131 -15.63690 -15.29234 -14.75312 -14.51181 -14.38232 -14.14006 -14.12682 -13.84647 -13.47540 -13.25427 -12.69570 -12.24984 -11.96763 -11.80623 -11.74065 -11.48460 -11.47138 -11.22842 -11.20405 -10.98121 -10.64073 -10.33572 -10.31627 -10.29415 -10.20907 -9.86111 -9.49307 -9.26586 -8.51891 -8.03957 -7.93246 -6.40338 -3.80884 -0.05483 0.50427 2.30626 2.42576 3.17533 3.28047 3.35471 3.40040 3.41243 3.79283 3.92333 3.97935 4.10991 4.30374 4.36418 4.45506 4.51366 4.71591 4.75062 5.06926 5.13340 5.19169 5.27022 5.34326 5.47103 5.62809 5.67147 5.75377 5.79626 5.90913 5.95991 6.14932 6.28227 6.31384 6.33426 6.46469 7.04346 7.09065 7.18622 7.45405 7.57062 7.88164 8.08088 8.63510 9.20058 9.56157 10.08136 10.77580 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.002047 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.973617 B =13677.717672 C =14128.173783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.021 3.979 3 Si 0.929 3.071 4 H -0.268 1.268 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.297 4.297 8 H 0.104 0.896 9 N -0.566 5.566 10 C 0.445 3.555 11 O -0.576 6.576 12 C 0.035 3.965 13 N -0.481 5.481 14 C 0.037 3.963 15 C -0.132 4.132 16 C 0.141 3.859 17 H 0.104 0.896 18 N -0.700 5.700 19 C 0.583 3.417 20 O -0.500 6.500 21 C 0.286 3.714 22 N -0.495 5.495 23 C 0.147 3.853 24 C -0.210 4.210 25 C 0.146 3.854 26 N -0.469 5.469 27 C 0.026 3.974 28 H 0.270 0.730 29 H 0.392 0.608 30 H 0.091 0.909 31 H 0.051 0.949 32 H 0.038 0.962 33 H 0.102 0.898 34 H 0.082 0.918 35 H 0.070 0.930 36 H 0.410 0.590 37 H 0.177 0.823 38 H 0.155 0.845 39 H 0.177 0.823 40 H 0.091 0.909 41 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.723 -26.502 7.706 28.187 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.544 5.544 2 C -0.181 4.181 3 Si 0.756 3.244 4 H -0.192 1.192 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.426 4.426 8 H 0.121 0.879 9 N -0.203 5.203 10 C 0.230 3.770 11 O -0.460 6.460 12 C -0.097 4.097 13 N -0.205 5.205 14 C -0.091 4.091 15 C -0.171 4.171 16 C 0.037 3.963 17 H 0.122 0.878 18 N -0.353 5.353 19 C 0.364 3.636 20 O -0.371 6.371 21 C 0.015 3.985 22 N -0.212 5.212 23 C -0.020 4.020 24 C -0.232 4.232 25 C -0.020 4.020 26 N -0.183 5.183 27 C -0.103 4.103 28 H 0.080 0.920 29 H 0.225 0.775 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.057 0.943 33 H 0.121 0.879 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.246 0.754 37 H 0.194 0.806 38 H 0.173 0.827 39 H 0.194 0.806 40 H 0.109 0.891 41 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -3.332 -25.630 6.374 26.620 hybrid contribution -1.988 0.044 1.479 2.478 sum -5.320 -25.585 7.853 27.287 Atomic orbital electron populations 1.69620 1.05922 1.27999 1.50902 1.25259 0.95642 0.99708 0.97444 0.85802 0.79735 0.81167 0.77662 1.19211 1.20770 1.20823 1.19749 0.93393 0.82179 1.47295 0.87850 1.41856 1.09160 1.04568 1.64683 1.19671 0.88395 0.84460 0.84429 1.90514 1.13636 1.86943 1.54877 1.22066 0.94207 0.91652 1.01752 1.65241 1.23224 0.99908 1.32095 1.23194 0.99776 0.96584 0.89546 1.22766 1.00321 0.94753 0.99309 1.21814 0.93353 0.86674 0.94455 0.87801 1.45952 1.22063 1.11723 1.55612 1.17228 0.85048 0.81259 0.80072 1.90834 1.18517 1.80147 1.47571 1.22961 0.88532 0.92143 0.94817 1.68316 1.08026 1.35427 1.09423 1.23342 0.99264 0.88465 0.90891 1.23226 0.98044 1.00034 1.01894 1.23438 0.91392 0.97913 0.89294 1.68272 1.35911 1.00495 1.13644 1.23423 0.95173 0.89878 1.01836 0.91973 0.77527 0.89119 0.93131 0.94336 0.87936 0.89953 0.91172 0.75369 0.80556 0.82699 0.80572 0.89084 0.93254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -24.55 13.05 55.50 0.72 -23.83 16 2 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 3 Si 0.93 21.13 29.55 -169.99 -5.02 16.11 16 4 H -0.27 -6.11 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 6 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 7 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 8 H 0.10 3.04 7.16 -52.49 -0.38 2.66 16 9 N -0.57 -14.30 5.29 -10.96 -0.06 -14.36 16 10 C 0.45 10.49 7.58 -10.99 -0.08 10.40 16 11 O -0.58 -15.57 14.42 5.54 0.08 -15.49 16 12 C 0.04 0.62 5.31 -4.98 -0.03 0.59 16 13 N -0.48 -7.93 5.07 -231.15 -1.17 -9.11 16 14 C 0.04 0.59 5.79 -2.18 -0.01 0.58 16 15 C -0.13 -1.79 6.78 -25.35 -0.17 -1.96 16 16 C 0.14 1.75 3.36 -66.55 -0.22 1.52 16 17 H 0.10 1.39 7.64 -51.93 -0.40 0.99 16 18 N -0.70 -7.70 5.03 -53.19 -0.27 -7.97 16 19 C 0.58 7.58 7.85 -12.01 -0.09 7.49 16 20 O -0.50 -8.18 16.56 5.40 0.09 -8.09 16 21 C 0.29 3.21 7.60 -157.07 -1.19 2.02 16 22 N -0.50 -4.36 9.57 -11.12 -0.11 -4.46 16 23 C 0.15 0.78 11.30 -17.23 -0.19 0.58 16 24 C -0.21 -0.83 10.18 -39.16 -0.40 -1.23 16 25 C 0.15 0.91 11.30 -17.22 -0.19 0.72 16 26 N -0.47 -5.12 10.13 -11.12 -0.11 -5.23 16 27 C 0.03 0.32 6.21 -2.01 -0.01 0.30 16 28 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 29 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 30 H 0.09 1.43 8.13 -51.93 -0.42 1.01 16 31 H 0.05 0.80 7.88 -51.93 -0.41 0.39 16 32 H 0.04 0.59 7.82 -51.93 -0.41 0.18 16 33 H 0.10 1.96 6.91 -51.93 -0.36 1.60 16 34 H 0.08 1.16 8.14 -51.93 -0.42 0.74 16 35 H 0.07 0.89 7.95 -51.93 -0.41 0.48 16 36 H 0.41 3.79 7.66 -40.82 -0.31 3.47 16 37 H 0.18 0.31 8.06 -52.49 -0.42 -0.11 16 38 H 0.16 0.05 8.06 -52.49 -0.42 -0.37 16 39 H 0.18 0.49 8.06 -52.49 -0.42 0.07 16 40 H 0.09 1.04 8.14 -51.93 -0.42 0.61 16 41 H 0.05 0.52 7.60 -51.93 -0.39 0.13 16 LS Contribution 353.86 15.07 5.33 5.33 Total: -1.00 -35.58 353.86 -8.42 -44.00 By element: Atomic # 1 Polarization: 15.11 SS G_CDS: -5.06 Total: 10.05 kcal Atomic # 6 Polarization: 15.90 SS G_CDS: -2.85 Total: 13.06 kcal Atomic # 7 Polarization: -63.97 SS G_CDS: -0.99 Total: -64.96 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: 0.17 Total: -23.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.58 -8.42 -44.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698554037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.694 kcal (2) G-P(sol) polarization free energy of solvation -35.580 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.421 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.001 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds