Wall clock time and date at job start Fri Apr 10 2020 18:19:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86804 * 119.99530 * 2 1 4 4 H 1.48494 * 109.46933 * 180.02562 * 3 2 1 5 5 H 1.48503 * 109.46782 * 300.00035 * 3 2 1 6 6 H 1.48495 * 109.47263 * 60.00271 * 3 2 1 7 7 C 1.38949 * 120.00167 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99807 * 179.97438 * 7 2 1 9 9 N 1.37097 * 120.00110 * 359.97438 * 7 2 1 10 10 C 1.34771 * 120.00088 * 180.02562 * 9 7 2 11 11 O 1.21294 * 119.99731 * 359.97438 * 10 9 7 12 12 C 1.50701 * 120.00342 * 180.02562 * 10 9 7 13 13 N 1.46894 * 109.47159 * 179.97438 * 12 10 9 14 14 C 1.48562 * 111.00344 * 69.87242 * 13 12 10 15 15 C 1.54379 * 104.69842 * 159.09785 * 14 13 12 16 16 C 1.54257 * 105.06256 * 336.08765 * 15 14 13 17 17 H 1.08997 * 110.32124 * 118.89793 * 16 15 14 18 18 N 1.46500 * 110.32527 * 241.00222 * 16 15 14 19 19 C 1.34779 * 119.99890 * 273.54862 * 18 16 15 20 20 O 1.21464 * 119.99872 * 359.97438 * 19 18 16 21 21 C 1.48540 * 119.99541 * 179.97438 * 19 18 16 22 22 N 1.32457 * 119.19111 * 359.72805 * 21 19 18 23 23 C 1.32106 * 120.77289 * 179.76158 * 22 21 19 24 24 C 1.38802 * 119.16011 * 0.49998 * 23 22 21 25 25 C 1.38803 * 118.50905 * 359.75433 * 24 23 22 26 26 N 1.32109 * 119.16215 * 359.97438 * 25 24 23 27 27 C 1.48856 * 111.13147 * 185.19362 * 13 12 10 28 28 H 0.96997 * 120.00263 * 359.97438 * 1 2 3 29 29 H 0.96998 * 119.99600 * 0.02562 * 9 7 2 30 30 H 1.09001 * 109.46872 * 59.99583 * 12 10 9 31 31 H 1.09003 * 109.46709 * 299.99472 * 12 10 9 32 32 H 1.09002 * 110.41176 * 40.25880 * 14 13 12 33 33 H 1.09002 * 110.41204 * 277.93787 * 14 13 12 34 34 H 1.08998 * 110.32365 * 94.98307 * 15 14 13 35 35 H 1.09002 * 110.32581 * 217.19029 * 15 14 13 36 36 H 0.96996 * 119.99855 * 93.54349 * 18 16 15 37 37 H 1.08002 * 120.42264 * 180.26160 * 23 22 21 38 38 H 1.08002 * 120.74806 * 179.76890 * 24 23 22 39 39 H 1.07992 * 120.41947 * 180.02562 * 25 24 23 40 40 H 1.09003 * 110.39541 * 82.21242 * 27 13 12 41 41 H 1.08998 * 110.39292 * 319.79096 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2480 1.6178 0.0000 4 1 3.7080 1.3466 -0.0006 5 1 1.8892 2.3965 -1.2125 6 1 1.8893 2.3965 1.2125 7 6 2.0089 -1.2033 -0.0005 8 1 3.0890 -1.2032 -0.0010 9 7 1.3235 -2.3906 -0.0005 10 6 1.9974 -3.5578 -0.0005 11 8 3.2103 -3.5577 -0.0010 12 6 1.2440 -4.8629 -0.0011 13 7 2.1987 -5.9794 -0.0016 14 6 2.9075 -6.0745 1.3006 15 6 3.4298 -7.5261 1.3571 16 6 2.5016 -8.3230 0.4175 17 1 3.0752 -8.7603 -0.3997 18 7 1.8003 -9.3708 1.1634 19 6 2.3793 -10.5751 1.3397 20 8 3.4824 -10.7917 0.8797 21 6 1.6684 -11.6372 2.0966 22 7 0.4685 -11.3818 2.5959 23 6 -0.1936 -12.3049 3.2701 24 6 0.3881 -13.5506 3.4609 25 6 1.6488 -13.7817 2.9281 26 7 2.2522 -12.8150 2.2597 27 6 1.4965 -7.2858 -0.1279 28 1 -0.4850 0.8400 0.0004 29 1 0.3535 -2.3906 -0.0005 30 1 0.6177 -4.9205 -0.8913 31 1 0.6171 -4.9209 0.8887 32 1 2.2178 -5.8863 2.1234 33 1 3.7385 -5.3699 1.3334 34 1 4.4589 -7.5723 1.0011 35 1 3.3623 -7.9135 2.3738 36 1 0.9193 -9.1979 1.5305 37 1 -1.1735 -12.0918 3.6712 38 1 -0.1287 -14.3230 4.0112 39 1 2.1300 -14.7397 3.0577 40 1 1.2653 -7.4934 -1.1727 41 1 0.5861 -7.2872 0.4714 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001698554037.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:04 Heat of formation + Delta-G solvation = -28.017982 kcal Electronic energy + Delta-G solvation = -25444.146908 eV Core-core repulsion = 21551.620072 eV Total energy + Delta-G solvation = -3892.526836 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.28378 -41.00648 -40.17793 -38.94686 -36.06340 -35.61089 -34.74585 -33.43889 -33.23490 -32.04889 -29.67234 -28.25010 -26.53646 -25.80616 -25.47237 -22.85347 -22.47595 -21.58766 -20.87539 -19.85531 -19.56276 -18.67119 -17.83551 -17.40281 -17.12971 -16.82177 -16.56246 -16.44245 -16.21157 -15.96780 -15.71489 -15.29921 -15.08974 -14.80258 -14.60131 -14.48097 -14.23670 -13.69828 -13.46037 -13.21809 -12.96181 -12.86076 -12.46977 -12.40646 -12.38445 -12.30170 -12.11158 -12.05257 -11.80071 -11.47879 -11.27621 -10.76932 -10.40405 -10.34673 -10.22156 -9.98910 -9.40367 -8.45540 -5.93599 -0.62147 0.07286 1.36887 1.42079 1.51022 1.55854 1.59733 2.07661 2.29540 2.72979 2.78522 2.93779 3.21294 3.26306 3.39011 3.46394 3.65954 3.78299 3.89983 4.03278 4.09825 4.24308 4.29042 4.34240 4.39101 4.45487 4.54640 4.65934 4.76967 4.78483 4.89654 5.02541 5.12729 5.27861 5.28543 5.42694 5.81297 5.87462 5.88358 6.07713 6.24755 6.62719 6.83305 7.01225 7.15134 7.58675 8.15203 8.72118 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.034862 B = 0.002047 C = 0.001981 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 802.973617 B =13677.717672 C =14128.173783 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.920 5.920 2 C -0.014 4.014 3 Si 0.991 3.009 4 H -0.275 1.275 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.330 4.330 8 H 0.077 0.923 9 N -0.575 5.575 10 C 0.441 3.559 11 O -0.617 6.617 12 C 0.048 3.952 13 N -0.507 5.507 14 C 0.041 3.959 15 C -0.124 4.124 16 C 0.149 3.851 17 H 0.092 0.908 18 N -0.685 5.685 19 C 0.581 3.419 20 O -0.547 6.547 21 C 0.256 3.744 22 N -0.503 5.503 23 C 0.136 3.864 24 C -0.179 4.179 25 C 0.129 3.871 26 N -0.510 5.510 27 C 0.035 3.965 28 H 0.277 0.723 29 H 0.397 0.603 30 H 0.116 0.884 31 H 0.077 0.923 32 H 0.048 0.952 33 H 0.062 0.938 34 H 0.069 0.931 35 H 0.078 0.922 36 H 0.421 0.579 37 H 0.216 0.784 38 H 0.202 0.798 39 H 0.206 0.794 40 H 0.105 0.895 41 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.470 -28.190 8.900 30.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.561 5.561 2 C -0.213 4.213 3 Si 0.815 3.185 4 H -0.200 1.200 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.460 4.460 8 H 0.095 0.905 9 N -0.212 5.212 10 C 0.228 3.772 11 O -0.503 6.503 12 C -0.083 4.083 13 N -0.231 5.231 14 C -0.087 4.087 15 C -0.163 4.163 16 C 0.044 3.956 17 H 0.110 0.890 18 N -0.338 5.338 19 C 0.363 3.637 20 O -0.422 6.422 21 C -0.014 4.014 22 N -0.221 5.221 23 C -0.029 4.029 24 C -0.200 4.200 25 C -0.036 4.036 26 N -0.226 5.226 27 C -0.093 4.093 28 H 0.087 0.913 29 H 0.231 0.769 30 H 0.134 0.866 31 H 0.095 0.905 32 H 0.066 0.934 33 H 0.081 0.919 34 H 0.088 0.912 35 H 0.097 0.903 36 H 0.259 0.741 37 H 0.232 0.768 38 H 0.219 0.781 39 H 0.223 0.777 40 H 0.123 0.877 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.145 -27.336 7.584 29.027 hybrid contribution -1.192 0.418 1.187 1.733 sum -7.337 -26.919 8.771 29.247 Atomic orbital electron populations 1.69671 1.06711 1.29155 1.50584 1.26008 0.96565 1.02298 0.96454 0.84892 0.77981 0.77270 0.78317 1.19995 1.19625 1.19575 1.19669 0.92622 0.84051 1.49658 0.90508 1.41912 1.09308 1.04612 1.65403 1.20781 0.88284 0.85984 0.82127 1.90494 1.15848 1.87869 1.56077 1.21934 0.93752 0.88522 1.04108 1.65147 1.24182 1.01422 1.32373 1.23032 0.98802 0.96866 0.89984 1.22654 0.99917 0.93598 1.00114 1.21598 0.93298 0.86846 0.93863 0.89035 1.45764 1.22179 1.10918 1.54957 1.17639 0.84612 0.81925 0.79500 1.90793 1.20570 1.81100 1.49691 1.22428 0.89838 0.92076 0.97010 1.68276 1.07148 1.36747 1.09927 1.24128 1.00382 0.88451 0.89978 1.23722 0.96582 1.00322 0.99387 1.24078 0.92631 0.98024 0.88832 1.68172 1.37648 1.01369 1.15390 1.23436 0.95477 0.87126 1.03284 0.91341 0.76939 0.86628 0.90534 0.93353 0.91937 0.91237 0.90326 0.74065 0.76768 0.78118 0.77722 0.87651 0.90509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -49.60 13.05 21.66 0.28 -49.31 16 2 C -0.01 -0.73 5.50 84.93 0.47 -0.27 16 3 Si 0.99 43.36 29.55 68.60 2.03 45.39 16 4 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 5 H -0.27 -11.35 7.11 99.48 0.71 -10.64 16 6 H -0.27 -11.28 7.11 99.48 0.71 -10.58 16 7 C -0.33 -18.90 9.68 84.04 0.81 -18.09 16 8 H 0.08 4.72 7.16 -2.91 -0.02 4.70 16 9 N -0.57 -29.50 5.29 -306.99 -1.62 -31.12 16 10 C 0.44 21.08 7.58 87.66 0.66 21.74 16 11 O -0.62 -34.68 14.42 -3.07 -0.04 -34.72 16 12 C 0.05 1.63 5.31 85.56 0.45 2.08 16 13 N -0.51 -16.37 5.07 -885.21 -4.49 -20.86 16 14 C 0.04 1.34 5.79 86.45 0.50 1.84 16 15 C -0.12 -3.42 6.78 31.49 0.21 -3.20 16 16 C 0.15 3.63 3.36 45.89 0.15 3.78 16 17 H 0.09 2.51 7.64 -2.39 -0.02 2.49 16 18 N -0.68 -14.62 5.03 -440.50 -2.22 -16.84 16 19 C 0.58 15.40 7.85 86.99 0.68 16.08 16 20 O -0.55 -18.82 16.56 -3.60 -0.06 -18.88 16 21 C 0.26 5.68 7.60 137.68 1.05 6.73 16 22 N -0.50 -7.93 9.57 -189.09 -1.81 -9.74 16 23 C 0.14 0.96 11.30 84.79 0.96 1.92 16 24 C -0.18 -0.69 10.18 22.54 0.23 -0.46 16 25 C 0.13 1.33 11.30 84.79 0.96 2.29 16 26 N -0.51 -10.98 10.13 -189.10 -1.92 -12.90 16 27 C 0.03 0.78 6.21 86.39 0.54 1.32 16 28 H 0.28 13.94 8.31 -92.71 -0.77 13.17 16 29 H 0.40 19.16 7.90 -92.71 -0.73 18.43 16 30 H 0.12 3.36 8.13 -2.39 -0.02 3.34 16 31 H 0.08 2.22 7.88 -2.39 -0.02 2.20 16 32 H 0.05 1.45 7.82 -2.39 -0.02 1.43 16 33 H 0.06 2.53 6.91 -2.39 -0.02 2.52 16 34 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 35 H 0.08 2.02 7.95 -2.39 -0.02 2.00 16 36 H 0.42 7.07 7.66 -92.71 -0.71 6.36 16 37 H 0.22 -0.29 8.06 -2.91 -0.02 -0.31 16 38 H 0.20 -1.10 8.06 -2.91 -0.02 -1.13 16 39 H 0.21 0.59 8.06 -2.91 -0.02 0.57 16 40 H 0.11 2.14 8.14 -2.39 -0.02 2.12 16 41 H 0.08 1.36 7.60 -2.39 -0.02 1.34 16 Total: -1.00 -82.20 353.86 -2.52 -84.72 By element: Atomic # 1 Polarization: 28.87 SS G_CDS: -0.35 Total: 28.52 kcal Atomic # 6 Polarization: 28.07 SS G_CDS: 7.68 Total: 35.75 kcal Atomic # 7 Polarization: -129.00 SS G_CDS: -11.77 Total: -140.78 kcal Atomic # 8 Polarization: -53.50 SS G_CDS: -0.10 Total: -53.60 kcal Atomic # 14 Polarization: 43.36 SS G_CDS: 2.03 Total: 45.39 kcal Total: -82.20 -2.52 -84.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001698554037.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.699 kcal (2) G-P(sol) polarization free energy of solvation -82.198 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds