Wall clock time and date at job start Fri Apr 10 2020 18:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31416 * 1 3 3 Si 1.86797 * 120.00050 * 2 1 4 4 H 1.48499 * 109.46913 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47236 * 300.00295 * 3 2 1 6 6 H 1.48503 * 109.47101 * 59.99938 * 3 2 1 7 7 C 1.38947 * 119.99765 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00120 * 179.97438 * 7 2 1 9 9 N 1.37102 * 120.00190 * 0.02562 * 7 2 1 10 10 C 1.34772 * 120.00164 * 179.97438 * 9 7 2 11 11 O 1.21291 * 119.99927 * 0.02562 * 10 9 7 12 12 C 1.50703 * 120.00031 * 179.97438 * 10 9 7 13 13 N 1.46902 * 109.47140 * 180.02562 * 12 10 9 14 14 C 1.46899 * 111.00002 * 180.02562 * 13 12 10 15 15 C 1.50693 * 109.47232 * 180.02562 * 14 13 12 16 16 C 1.30999 * 120.00369 * 124.99626 * 15 14 13 17 17 C 1.50700 * 120.00207 * 179.97438 * 16 15 14 18 18 N 1.46498 * 109.46769 * 125.00304 * 17 16 15 19 19 C 1.34777 * 119.99828 * 179.72341 * 18 17 16 20 20 O 1.21553 * 119.99924 * 0.28083 * 19 18 17 21 21 C 1.47829 * 120.00159 * 180.27793 * 19 18 17 22 22 C 1.39953 * 120.93858 * 359.72459 * 21 19 18 23 23 N 1.32144 * 118.92438 * 179.71741 * 22 21 19 24 24 C 1.31868 * 120.96718 * 0.57176 * 23 22 21 25 25 N 1.31873 * 122.09753 * 359.69538 * 24 23 22 26 26 C 1.32151 * 120.96130 * 0.02562 * 25 24 23 27 27 H 0.97009 * 119.99826 * 0.02562 * 1 2 3 28 28 H 0.97000 * 119.99944 * 359.97438 * 9 7 2 29 29 H 1.08997 * 109.47049 * 60.00444 * 12 10 9 30 30 H 1.08997 * 109.47125 * 300.00566 * 12 10 9 31 31 H 1.00895 * 110.99574 * 303.95591 * 13 12 10 32 32 H 1.08998 * 109.47162 * 59.99644 * 14 13 12 33 33 H 1.09003 * 109.47060 * 300.00354 * 14 13 12 34 34 H 1.08008 * 119.99903 * 305.00322 * 15 14 13 35 35 H 1.08001 * 119.99918 * 0.02562 * 16 15 14 36 36 H 1.09004 * 109.47210 * 5.00662 * 17 16 15 37 37 H 1.08994 * 109.47121 * 245.00632 * 17 16 15 38 38 H 0.97001 * 120.00384 * 0.02562 * 18 17 16 39 39 H 1.08003 * 120.53440 * 359.97438 * 22 21 19 40 40 H 1.08000 * 118.95368 * 179.72821 * 24 23 22 41 41 H 1.08000 * 120.53487 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3142 0.0000 0.0000 3 14 2.2482 1.6177 0.0000 4 1 3.7081 1.3463 -0.0006 5 1 1.8894 2.3965 -1.2125 6 1 1.8894 2.3964 1.2125 7 6 2.0088 -1.2033 -0.0005 8 1 3.0888 -1.2034 -0.0010 9 7 1.3233 -2.3907 -0.0016 10 6 1.9971 -3.5579 -0.0026 11 8 3.2101 -3.5579 -0.0022 12 6 1.2436 -4.8630 -0.0032 13 7 2.1982 -5.9796 -0.0037 14 6 1.4978 -7.2709 -0.0049 15 6 2.5072 -8.3898 -0.0048 16 6 2.4622 -9.3125 0.9240 17 6 3.4713 -10.4317 0.9238 18 7 4.1486 -10.4787 2.2220 19 6 5.0945 -11.4101 2.4553 20 8 5.3891 -12.2079 1.5867 21 6 5.7736 -11.4615 3.7673 22 6 5.4539 -10.5491 4.7792 23 7 6.0817 -10.6348 5.9388 24 6 7.0040 -11.5546 6.1447 25 7 7.3398 -12.4300 5.2174 26 6 6.7587 -12.4200 4.0306 27 1 -0.4850 0.8401 -0.0004 28 1 0.3533 -2.3907 -0.0016 29 1 0.6167 -4.9201 -0.8930 30 1 0.6172 -4.9212 0.8869 31 1 2.8330 -5.9121 -0.7850 32 1 0.8732 -7.3446 -0.8951 33 1 0.8726 -7.3459 0.8848 34 1 3.2679 -8.4309 -0.7704 35 1 1.7014 -9.2715 1.6895 36 1 4.2056 -10.2588 0.1370 37 1 2.9631 -11.3791 0.7446 38 1 3.9133 -9.8424 2.9152 39 1 4.7032 -9.7899 4.6164 40 1 7.4998 -11.5924 7.1034 41 1 7.0393 -13.1400 3.2761 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699245267.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:06 Heat of formation + Delta-G solvation = -28.250595 kcal Electronic energy + Delta-G solvation = -24027.505530 eV Core-core repulsion = 20134.968607 eV Total energy + Delta-G solvation = -3892.536923 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.28249 -40.47816 -40.15141 -37.78153 -36.44026 -35.84979 -34.96286 -34.12635 -33.29474 -33.04676 -29.72170 -27.77019 -26.42014 -25.77159 -25.31169 -23.59302 -22.08937 -21.29434 -20.66601 -19.88565 -19.21835 -18.76785 -18.32086 -17.87552 -17.03101 -16.81593 -16.59658 -16.47200 -16.00042 -15.77503 -15.66137 -15.28088 -15.11841 -14.99422 -14.72733 -14.52041 -14.41935 -14.03857 -13.53689 -13.24598 -13.05419 -12.90066 -12.81138 -12.70500 -12.40608 -12.11846 -12.05041 -12.02294 -11.51520 -11.27076 -10.93109 -10.46272 -10.43879 -10.35355 -10.06187 -10.00986 -9.26131 -8.47001 -5.95582 -0.70199 -0.10652 1.02852 1.36739 1.42411 1.56353 1.67069 2.05508 2.14490 2.29725 2.69399 2.99967 3.02429 3.06643 3.20527 3.31693 3.57562 3.59211 3.75289 3.82631 4.11684 4.29265 4.31492 4.44350 4.49203 4.55273 4.58315 4.60485 4.67637 4.71247 4.88624 5.13942 5.22749 5.41318 5.68181 5.71071 5.77740 5.90567 6.10643 6.33556 6.38635 6.60175 6.86396 6.98844 7.12852 7.56598 8.11943 8.70472 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016344 B = 0.001763 C = 0.001634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.740777 B =15881.828900 C =17128.498014 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C -0.013 4.013 3 Si 0.992 3.008 4 H -0.274 1.274 5 H -0.271 1.271 6 H -0.271 1.271 7 C -0.333 4.333 8 H 0.078 0.922 9 N -0.573 5.573 10 C 0.436 3.564 11 O -0.625 6.625 12 C 0.065 3.935 13 N -0.681 5.681 14 C 0.085 3.915 15 C -0.124 4.124 16 C -0.165 4.165 17 C 0.154 3.846 18 N -0.706 5.706 19 C 0.571 3.429 20 O -0.568 6.568 21 C -0.249 4.249 22 C 0.191 3.809 23 N -0.536 5.536 24 C 0.314 3.686 25 N -0.538 5.538 26 C 0.202 3.798 27 H 0.278 0.722 28 H 0.397 0.603 29 H 0.068 0.932 30 H 0.107 0.893 31 H 0.344 0.656 32 H 0.052 0.948 33 H 0.090 0.910 34 H 0.111 0.889 35 H 0.136 0.864 36 H 0.065 0.935 37 H 0.082 0.918 38 H 0.415 0.585 39 H 0.199 0.801 40 H 0.232 0.768 41 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.100 -23.864 7.868 25.318 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.213 4.213 3 Si 0.816 3.184 4 H -0.199 1.199 5 H -0.196 1.196 6 H -0.196 1.196 7 C -0.463 4.463 8 H 0.096 0.904 9 N -0.211 5.211 10 C 0.224 3.776 11 O -0.511 6.511 12 C -0.068 4.068 13 N -0.314 5.314 14 C -0.043 4.043 15 C -0.143 4.143 16 C -0.184 4.184 17 C 0.031 3.969 18 N -0.358 5.358 19 C 0.357 3.643 20 O -0.449 6.449 21 C -0.257 4.257 22 C 0.024 3.976 23 N -0.250 5.250 24 C 0.029 3.971 25 N -0.251 5.251 26 C 0.036 3.964 27 H 0.087 0.913 28 H 0.231 0.769 29 H 0.086 0.914 30 H 0.125 0.875 31 H 0.162 0.838 32 H 0.070 0.930 33 H 0.108 0.892 34 H 0.129 0.871 35 H 0.153 0.847 36 H 0.083 0.917 37 H 0.100 0.900 38 H 0.253 0.747 39 H 0.216 0.784 40 H 0.248 0.752 41 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 4.489 -24.284 8.823 26.224 hybrid contribution -0.914 1.247 -1.570 2.204 sum 3.575 -23.037 7.252 24.415 Atomic orbital electron populations 1.69676 1.06769 1.29226 1.50371 1.26030 0.96562 1.02386 0.96312 0.84878 0.78015 0.77157 0.78328 1.19872 1.19617 1.19593 1.19695 0.92689 0.84081 1.49850 0.90393 1.41942 1.09370 1.04716 1.65038 1.20942 0.88266 0.86263 0.82132 1.90495 1.15971 1.88000 1.56683 1.21552 0.93976 0.87894 1.03333 1.60148 1.19041 1.00736 1.51433 1.21148 0.94728 0.86238 1.02202 1.22820 0.98611 0.93836 0.99072 1.22760 0.99827 0.95645 1.00157 1.20351 0.93620 0.98419 0.84503 1.45814 1.38633 1.33826 1.17493 1.17906 0.79420 0.80715 0.86249 1.90794 1.65406 1.41772 1.46896 1.21691 1.03909 1.02936 0.97168 1.23961 0.93700 0.93564 0.86358 1.68601 1.09663 1.23746 1.22973 1.25962 0.88444 0.83650 0.99072 1.68668 1.28050 1.26070 1.02356 1.23693 0.86502 0.92925 0.93316 0.91299 0.76898 0.91397 0.87467 0.83793 0.93037 0.89196 0.87127 0.84663 0.91678 0.90008 0.74730 0.78406 0.75205 0.79820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -48.90 13.05 21.66 0.28 -48.62 16 2 C -0.01 -0.69 5.50 84.93 0.47 -0.23 16 3 Si 0.99 42.51 29.55 68.60 2.03 44.53 16 4 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 5 H -0.27 -11.09 7.11 99.48 0.71 -10.39 16 6 H -0.27 -11.10 7.11 99.48 0.71 -10.39 16 7 C -0.33 -18.76 9.68 84.04 0.81 -17.95 16 8 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 9 N -0.57 -28.85 5.29 -306.99 -1.62 -30.47 16 10 C 0.44 20.22 7.82 87.66 0.69 20.90 16 11 O -0.62 -34.16 15.78 -3.06 -0.05 -34.21 16 12 C 0.06 2.06 6.17 85.56 0.53 2.59 16 13 N -0.68 -19.56 6.11 -521.99 -3.19 -22.75 16 14 C 0.08 1.61 6.12 85.56 0.52 2.13 16 15 C -0.12 -2.03 9.38 25.65 0.24 -1.79 16 16 C -0.16 -2.09 9.24 25.65 0.24 -1.86 16 17 C 0.15 2.14 6.11 85.63 0.52 2.66 16 18 N -0.71 -9.23 5.51 -469.73 -2.59 -11.82 16 19 C 0.57 10.09 7.79 86.78 0.68 10.76 16 20 O -0.57 -14.11 16.45 -3.88 -0.06 -14.17 16 21 C -0.25 -3.75 5.91 -19.91 -0.12 -3.87 16 22 C 0.19 2.37 10.81 85.06 0.92 3.29 16 23 N -0.54 -7.84 10.42 -198.97 -2.07 -9.92 16 24 C 0.31 4.09 12.27 180.84 2.22 6.31 16 25 N -0.54 -8.59 10.42 -198.98 -2.07 -10.66 16 26 C 0.20 3.24 10.88 85.06 0.93 4.16 16 27 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16 28 H 0.40 18.83 7.90 -92.71 -0.73 18.10 16 29 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 30 H 0.11 3.01 8.14 -2.39 -0.02 2.99 16 31 H 0.34 10.58 8.42 -89.70 -0.76 9.83 16 32 H 0.05 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.09 1.49 7.79 -2.39 -0.02 1.47 16 34 H 0.11 1.86 7.84 -2.91 -0.02 1.84 16 35 H 0.14 1.29 7.84 -2.91 -0.02 1.27 16 36 H 0.06 1.08 7.79 -2.38 -0.02 1.06 16 37 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 38 H 0.41 3.36 6.60 -92.71 -0.61 2.75 16 39 H 0.20 1.18 6.54 -2.91 -0.02 1.16 16 40 H 0.23 1.32 8.06 -2.91 -0.02 1.30 16 41 H 0.18 2.67 7.74 -2.91 -0.02 2.65 16 Total: -1.00 -75.34 366.14 -1.71 -77.04 By element: Atomic # 1 Polarization: 34.92 SS G_CDS: -1.00 Total: 33.93 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 8.64 Total: 27.12 kcal Atomic # 7 Polarization: -122.98 SS G_CDS: -11.27 Total: -134.25 kcal Atomic # 8 Polarization: -48.27 SS G_CDS: -0.11 Total: -48.38 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.53 kcal Total: -75.34 -1.71 -77.04 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699245267.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.792 kcal (2) G-P(sol) polarization free energy of solvation -75.337 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.706 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.043 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds