Wall clock time and date at job start Fri Apr 10 2020 18:17:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47150 * 2 1 4 4 C 1.50704 * 109.46785 * 119.99475 * 2 1 3 5 5 O 1.21283 * 119.99454 * 120.00355 * 4 2 1 6 6 N 1.34771 * 120.00169 * 300.00089 * 4 2 1 7 7 C 1.46495 * 119.99880 * 359.97438 * 6 4 2 8 8 C 1.46497 * 120.00003 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47109 * 89.99836 * 8 6 4 10 10 H 1.07997 * 120.00606 * 359.97438 * 9 8 6 11 11 C 1.37884 * 120.00138 * 179.97438 * 9 8 6 12 12 N 1.31522 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00519 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46810 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47097 * 119.99878 * 13 11 9 16 16 H 1.48490 * 109.47269 * 240.00105 * 13 11 9 17 17 N 1.46900 * 109.47027 * 239.99406 * 2 1 3 18 18 C 1.48530 * 111.00008 * 54.53670 * 17 2 1 19 19 C 1.54942 * 103.22589 * 159.71735 * 18 17 2 20 20 C 1.54588 * 102.92418 * 322.58694 * 19 18 17 21 21 H 1.08999 * 110.31106 * 263.04212 * 20 19 18 22 22 S 1.81398 * 110.39516 * 140.91413 * 20 19 18 23 23 N 1.65599 * 104.44666 * 64.23547 * 22 20 19 24 24 O 1.42098 * 110.54496 * 175.85581 * 22 20 19 25 25 O 1.42097 * 110.54409 * 312.61230 * 22 20 19 26 26 C 1.47903 * 110.99668 * 171.92976 * 17 2 1 27 27 H 1.09000 * 109.47427 * 306.98137 * 1 2 3 28 28 H 1.09003 * 109.46955 * 66.97861 * 1 2 3 29 29 H 1.09003 * 109.47478 * 186.98196 * 1 2 3 30 30 H 1.08998 * 109.47156 * 90.00313 * 7 6 4 31 31 H 1.09007 * 109.47114 * 210.00019 * 7 6 4 32 32 H 1.09002 * 109.47729 * 329.99958 * 7 6 4 33 33 H 1.09005 * 109.47390 * 209.99684 * 8 6 4 34 34 H 1.09002 * 109.47414 * 329.99845 * 8 6 4 35 35 H 0.96994 * 119.99849 * 179.97438 * 12 11 9 36 36 H 1.08997 * 110.66793 * 278.15076 * 18 17 2 37 37 H 1.08998 * 110.66852 * 41.28592 * 18 17 2 38 38 H 1.09000 * 110.72415 * 204.22516 * 19 18 17 39 39 H 1.09001 * 110.87562 * 81.01690 * 19 18 17 40 40 H 0.97005 * 120.00164 * 150.00106 * 23 22 20 41 41 H 0.97001 * 120.00430 * 330.00276 * 23 22 20 42 42 H 1.08998 * 109.91858 * 333.51309 * 26 17 2 43 43 H 1.09006 * 109.91315 * 94.80584 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 0.8649 0.9416 2.5889 8 6 2.1954 -0.9400 3.6508 9 6 3.5227 -0.3559 4.0607 10 1 3.9589 0.4486 3.4873 11 6 4.1804 -0.8487 5.1679 12 7 3.6490 -1.8281 5.8665 13 14 5.8261 -0.1253 5.6756 14 1 6.2029 0.9577 4.7320 15 1 5.7202 0.4299 7.0488 16 1 6.8630 -1.1879 5.6499 17 7 2.0196 -0.6926 -1.1994 18 6 1.4385 -0.0997 -2.4310 19 6 2.4190 -0.5558 -3.5407 20 6 3.7951 -0.4743 -2.8411 21 1 4.2864 0.4686 -3.0813 22 16 4.8401 -1.8717 -3.3369 23 7 5.0803 -1.6522 -4.9606 24 8 6.1378 -1.7494 -2.7711 25 8 4.1155 -3.0911 -3.2515 26 6 3.4852 -0.5467 -1.3344 27 1 -0.3634 0.6182 0.8209 28 1 -0.3633 0.4019 -0.9458 29 1 -0.3634 -1.0200 0.1249 30 1 -0.1832 0.6442 2.6220 31 1 1.1227 1.4669 3.5086 32 1 1.0288 1.6004 1.7361 33 1 1.4774 -0.8147 4.4614 34 1 2.3168 -2.0013 3.4339 35 1 4.1118 -2.1750 6.6451 36 1 0.4395 -0.4952 -2.6140 37 1 1.4161 0.9878 -2.3608 38 1 2.3789 0.1221 -4.3933 39 1 2.2046 -1.5781 -3.8522 40 1 5.8995 -1.9638 -5.3762 41 1 4.4017 -1.2122 -5.4963 42 1 3.8141 0.3690 -0.8431 43 1 3.9863 -1.4085 -0.8933 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330479659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:37 Heat of formation + Delta-G solvation = -84.298160 kcal Electronic energy + Delta-G solvation = -26210.415356 eV Core-core repulsion = 22418.599228 eV Total energy + Delta-G solvation = -3791.816128 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.01425 -38.17923 -37.06994 -35.96830 -34.84216 -33.89689 -33.37273 -32.45025 -29.57539 -29.27397 -27.49075 -26.09267 -24.21644 -22.75018 -21.87595 -20.93328 -19.44677 -18.50366 -18.10808 -17.47684 -16.81238 -16.44531 -16.33525 -16.03842 -15.56820 -15.10943 -14.91220 -14.47075 -14.08527 -13.70299 -13.36684 -13.22704 -12.90327 -12.56534 -12.31431 -12.27695 -12.20751 -12.12489 -12.09041 -12.02368 -11.88662 -11.70064 -11.39012 -11.33648 -11.25025 -11.09019 -10.85275 -10.78504 -10.56540 -10.37573 -10.13703 -9.59619 -8.93024 -8.41992 -8.35854 -7.62507 -6.02676 -4.07564 0.10849 2.71625 3.31270 3.38287 3.40744 3.43930 3.52318 3.56641 3.77322 4.04150 4.19684 4.44581 4.46739 4.72015 4.93133 4.95635 5.06573 5.10517 5.15746 5.26063 5.31940 5.38962 5.51327 5.57138 5.62406 5.67484 5.70960 5.74112 5.80560 5.88761 6.08895 6.25466 6.70763 6.78166 6.79510 7.10709 7.47356 7.55675 7.93798 8.24779 8.42374 8.92015 9.12202 9.57725 11.05413 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.004070 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.108716 B = 6877.679878 C = 8307.324816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 H 0.064 0.936 4 C 0.508 3.492 5 O -0.521 6.521 6 N -0.602 5.602 7 C 0.082 3.918 8 C 0.246 3.754 9 C -0.527 4.527 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.897 3.103 14 H -0.274 1.274 15 H -0.284 1.284 16 H -0.282 1.282 17 N -0.488 5.488 18 C 0.041 3.959 19 C -0.106 4.106 20 C -0.602 4.602 21 H 0.142 0.858 22 S 2.620 3.380 23 N -1.253 6.253 24 O -0.959 6.959 25 O -0.943 6.943 26 C 0.070 3.930 27 H 0.078 0.922 28 H 0.062 0.938 29 H 0.070 0.930 30 H 0.048 0.952 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.263 0.737 36 H 0.094 0.906 37 H 0.051 0.949 38 H 0.089 0.911 39 H 0.094 0.906 40 H 0.418 0.582 41 H 0.411 0.589 42 H 0.066 0.934 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 8.596 -22.463 24.797 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.058 4.058 3 H 0.082 0.918 4 C 0.293 3.707 5 O -0.397 6.397 6 N -0.335 5.335 7 C -0.062 4.062 8 C 0.127 3.873 9 C -0.566 4.566 10 H 0.075 0.925 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.725 3.275 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.208 1.208 17 N -0.212 5.212 18 C -0.087 4.087 19 C -0.145 4.145 20 C -0.712 4.712 21 H 0.160 0.840 22 S 2.710 3.290 23 N -0.925 5.925 24 O -0.949 6.949 25 O -0.932 6.932 26 C -0.059 4.059 27 H 0.096 0.904 28 H 0.081 0.919 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.112 0.888 37 H 0.069 0.931 38 H 0.107 0.893 39 H 0.112 0.888 40 H 0.248 0.752 41 H 0.236 0.764 42 H 0.084 0.916 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -5.438 6.647 -21.512 23.163 hybrid contribution 0.948 2.114 -0.158 2.322 sum -4.490 8.760 -21.670 23.801 Atomic orbital electron populations 1.22067 0.92198 1.03949 1.02774 1.21885 0.97318 0.96000 0.90643 0.91794 1.20015 0.81423 0.85328 0.83965 1.90681 1.37114 1.25995 1.85889 1.48100 1.49957 1.28231 1.07213 1.21780 0.93935 0.88176 1.02320 1.19294 0.94148 0.93813 0.80034 1.21456 1.04889 1.19066 1.11151 0.92538 1.24936 0.97914 0.94945 0.96279 1.69942 1.38920 1.26069 1.18316 0.86454 0.83833 0.79079 0.78110 1.19873 1.20986 1.20775 1.64590 1.03882 1.52078 1.00699 1.23225 0.98991 0.97623 0.88832 1.22389 0.90261 1.03905 0.97951 1.31362 1.12267 1.21059 1.06550 0.83957 1.04836 0.74970 0.76210 0.72970 1.53323 1.31235 1.78448 1.29512 1.93617 1.37379 1.86946 1.76945 1.93642 1.74805 1.39891 1.84860 1.22480 0.90685 1.03705 0.89051 0.90363 0.91888 0.91123 0.93410 0.90839 0.92629 0.94990 0.93718 0.92749 0.88812 0.93112 0.89266 0.88783 0.75206 0.76355 0.91601 0.88451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.77 8.66 37.16 0.32 -1.45 16 2 C 0.05 0.80 1.44 -68.86 -0.10 0.70 16 3 H 0.06 0.86 7.13 -51.93 -0.37 0.49 16 4 C 0.51 10.68 6.86 -10.99 -0.08 10.61 16 5 O -0.52 -13.44 14.52 5.56 0.08 -13.36 16 6 N -0.60 -12.75 2.86 -182.95 -0.52 -13.27 16 7 C 0.08 1.26 8.79 59.84 0.53 1.78 16 8 C 0.25 6.51 5.16 -5.20 -0.03 6.48 16 9 C -0.53 -15.09 9.39 -34.44 -0.32 -15.42 16 10 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 11 C 0.06 1.78 5.46 -17.81 -0.10 1.68 16 12 N -0.89 -26.91 13.29 55.43 0.74 -26.17 16 13 Si 0.90 22.22 29.54 -169.99 -5.02 17.20 16 14 H -0.27 -6.68 7.11 56.52 0.40 -6.28 16 15 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 17 N -0.49 -7.13 4.82 -223.88 -1.08 -8.20 16 18 C 0.04 0.40 5.17 -1.90 -0.01 0.39 16 19 C -0.11 -0.82 6.44 -24.87 -0.16 -0.98 16 20 C -0.60 -5.94 3.71 -25.38 -0.09 -6.04 16 21 H 0.14 0.94 8.14 -51.93 -0.42 0.51 16 22 S 2.62 31.22 5.14 -107.50 -0.55 30.67 16 23 N -1.25 -8.26 9.36 60.35 0.56 -7.70 16 24 O -0.96 -15.34 18.10 -57.54 -1.04 -16.38 16 25 O -0.94 -15.12 17.48 -57.54 -1.01 -16.13 16 26 C 0.07 1.05 5.37 -2.75 -0.01 1.03 16 27 H 0.08 0.81 4.75 -51.93 -0.25 0.57 16 28 H 0.06 0.55 6.45 -51.93 -0.34 0.22 16 29 H 0.07 0.93 8.13 -51.93 -0.42 0.51 16 30 H 0.05 0.62 7.11 -51.93 -0.37 0.25 16 31 H 0.07 1.17 8.07 -51.92 -0.42 0.75 16 32 H 0.06 0.69 5.93 -51.93 -0.31 0.38 16 33 H 0.03 0.85 8.07 -51.93 -0.42 0.43 16 34 H 0.04 1.34 7.42 -51.93 -0.39 0.96 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.09 0.78 7.50 -51.93 -0.39 0.39 16 37 H 0.05 0.40 8.02 -51.93 -0.42 -0.01 16 38 H 0.09 0.34 8.14 -51.93 -0.42 -0.09 16 39 H 0.09 0.77 7.33 -51.93 -0.38 0.39 16 40 H 0.42 2.33 8.96 -34.47 -0.31 2.02 16 41 H 0.41 1.36 8.79 -34.47 -0.30 1.06 16 42 H 0.07 0.95 7.60 -51.93 -0.39 0.55 16 43 H 0.10 1.79 6.77 -51.93 -0.35 1.44 16 LS Contribution 353.32 15.07 5.32 5.32 Total: -1.00 -40.62 353.32 -8.78 -49.40 By element: Atomic # 1 Polarization: 6.04 SS G_CDS: -6.21 Total: -0.17 kcal Atomic # 6 Polarization: -1.16 SS G_CDS: -0.05 Total: -1.21 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: -0.30 Total: -55.35 kcal Atomic # 8 Polarization: -43.90 SS G_CDS: -1.97 Total: -45.87 kcal Atomic # 14 Polarization: 22.22 SS G_CDS: -5.02 Total: 17.20 kcal Atomic # 16 Polarization: 31.22 SS G_CDS: -0.55 Total: 30.67 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -40.62 -8.78 -49.40 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330479659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.896 kcal (2) G-P(sol) polarization free energy of solvation -40.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds