Wall clock time and date at job start Fri Apr 10 2020 18:17:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08995 * 109.47150 * 2 1 4 4 C 1.50704 * 109.46785 * 119.99475 * 2 1 3 5 5 O 1.21283 * 119.99454 * 120.00355 * 4 2 1 6 6 N 1.34771 * 120.00169 * 300.00089 * 4 2 1 7 7 C 1.46495 * 119.99880 * 359.97438 * 6 4 2 8 8 C 1.46497 * 120.00003 * 180.02562 * 6 4 2 9 9 C 1.50700 * 109.47109 * 89.99836 * 8 6 4 10 10 H 1.07997 * 120.00606 * 359.97438 * 9 8 6 11 11 C 1.37884 * 120.00138 * 179.97438 * 9 8 6 12 12 N 1.31522 * 119.99667 * 359.97438 * 11 9 8 13 13 Si 1.86798 * 120.00519 * 179.97438 * 11 9 8 14 14 H 1.48505 * 109.46810 * 0.02562 * 13 11 9 15 15 H 1.48500 * 109.47097 * 119.99878 * 13 11 9 16 16 H 1.48490 * 109.47269 * 240.00105 * 13 11 9 17 17 N 1.46900 * 109.47027 * 239.99406 * 2 1 3 18 18 C 1.48530 * 111.00008 * 54.53670 * 17 2 1 19 19 C 1.54942 * 103.22589 * 159.71735 * 18 17 2 20 20 C 1.54588 * 102.92418 * 322.58694 * 19 18 17 21 21 H 1.08999 * 110.31106 * 263.04212 * 20 19 18 22 22 S 1.81398 * 110.39516 * 140.91413 * 20 19 18 23 23 N 1.65599 * 104.44666 * 64.23547 * 22 20 19 24 24 O 1.42098 * 110.54496 * 175.85581 * 22 20 19 25 25 O 1.42097 * 110.54409 * 312.61230 * 22 20 19 26 26 C 1.47903 * 110.99668 * 171.92976 * 17 2 1 27 27 H 1.09000 * 109.47427 * 306.98137 * 1 2 3 28 28 H 1.09003 * 109.46955 * 66.97861 * 1 2 3 29 29 H 1.09003 * 109.47478 * 186.98196 * 1 2 3 30 30 H 1.08998 * 109.47156 * 90.00313 * 7 6 4 31 31 H 1.09007 * 109.47114 * 210.00019 * 7 6 4 32 32 H 1.09002 * 109.47729 * 329.99958 * 7 6 4 33 33 H 1.09005 * 109.47390 * 209.99684 * 8 6 4 34 34 H 1.09002 * 109.47414 * 329.99845 * 8 6 4 35 35 H 0.96994 * 119.99849 * 179.97438 * 12 11 9 36 36 H 1.08997 * 110.66793 * 278.15076 * 18 17 2 37 37 H 1.08998 * 110.66852 * 41.28592 * 18 17 2 38 38 H 1.09000 * 110.72415 * 204.22516 * 19 18 17 39 39 H 1.09001 * 110.87562 * 81.01690 * 19 18 17 40 40 H 0.97005 * 120.00164 * 150.00106 * 23 22 20 41 41 H 0.97001 * 120.00430 * 330.00276 * 23 22 20 42 42 H 1.08998 * 109.91858 * 333.51309 * 26 17 2 43 43 H 1.09006 * 109.91315 * 94.80584 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7103 1.2306 5 8 2.7295 -1.6964 1.1193 6 7 1.7066 -0.2498 2.4546 7 6 0.8649 0.9416 2.5889 8 6 2.1954 -0.9400 3.6508 9 6 3.5227 -0.3559 4.0607 10 1 3.9589 0.4486 3.4873 11 6 4.1804 -0.8487 5.1679 12 7 3.6490 -1.8281 5.8665 13 14 5.8261 -0.1253 5.6756 14 1 6.2029 0.9577 4.7320 15 1 5.7202 0.4299 7.0488 16 1 6.8630 -1.1879 5.6499 17 7 2.0196 -0.6926 -1.1994 18 6 1.4385 -0.0997 -2.4310 19 6 2.4190 -0.5558 -3.5407 20 6 3.7951 -0.4743 -2.8411 21 1 4.2864 0.4686 -3.0813 22 16 4.8401 -1.8717 -3.3369 23 7 5.0803 -1.6522 -4.9606 24 8 6.1378 -1.7494 -2.7711 25 8 4.1155 -3.0911 -3.2515 26 6 3.4852 -0.5467 -1.3344 27 1 -0.3634 0.6182 0.8209 28 1 -0.3633 0.4019 -0.9458 29 1 -0.3634 -1.0200 0.1249 30 1 -0.1832 0.6442 2.6220 31 1 1.1227 1.4669 3.5086 32 1 1.0288 1.6004 1.7361 33 1 1.4774 -0.8147 4.4614 34 1 2.3168 -2.0013 3.4339 35 1 4.1118 -2.1750 6.6451 36 1 0.4395 -0.4952 -2.6140 37 1 1.4161 0.9878 -2.3608 38 1 2.3789 0.1221 -4.3933 39 1 2.2046 -1.5781 -3.8522 40 1 5.8995 -1.9638 -5.3762 41 1 4.4017 -1.2122 -5.4963 42 1 3.8141 0.3690 -0.8431 43 1 3.9863 -1.4085 -0.8933 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330479659.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:36 Heat of formation + Delta-G solvation = -122.003588 kcal Electronic energy + Delta-G solvation = -26212.050386 eV Core-core repulsion = 22418.599228 eV Total energy + Delta-G solvation = -3793.451158 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.30054 -39.44526 -38.16727 -37.05390 -36.61075 -35.20295 -34.39886 -34.01489 -30.66967 -30.28990 -29.16300 -27.55839 -25.76828 -24.22643 -22.89765 -21.92705 -20.36070 -19.99232 -18.98260 -18.72902 -18.28393 -17.98672 -17.52201 -17.06322 -16.81614 -16.49462 -16.37624 -15.79921 -15.59014 -14.90849 -14.55888 -14.39170 -14.18383 -13.87130 -13.71649 -13.51819 -13.39987 -13.26770 -13.20330 -13.17337 -13.11166 -12.90244 -12.79177 -12.72565 -12.56383 -12.37268 -12.33644 -12.15296 -11.98409 -11.69605 -11.57190 -11.13851 -10.67591 -10.49379 -9.42640 -9.40698 -8.24958 -6.40092 -0.81226 1.32601 1.36505 1.47177 1.84565 1.90681 2.21636 2.38795 2.62586 2.89908 3.04379 3.06628 3.23834 3.60360 3.66454 3.92177 4.04175 4.09779 4.15166 4.30938 4.41172 4.52704 4.61926 4.66132 4.75614 4.80423 4.83961 4.89106 4.96222 4.99045 5.04100 5.21385 5.26299 5.28861 5.54011 5.71451 5.82139 5.95756 6.03909 6.39881 6.68333 6.79931 7.26472 7.51148 8.82276 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.013989 B = 0.004070 C = 0.003370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2001.108716 B = 6877.679878 C = 8307.324816 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.066 3.934 3 H 0.091 0.909 4 C 0.492 3.508 5 O -0.586 6.586 6 N -0.610 5.610 7 C 0.076 3.924 8 C 0.261 3.739 9 C -0.542 4.542 10 H 0.053 0.947 11 C 0.007 3.993 12 N -0.928 5.928 13 Si 0.967 3.033 14 H -0.266 1.266 15 H -0.265 1.265 16 H -0.284 1.284 17 N -0.520 5.520 18 C 0.037 3.963 19 C -0.105 4.105 20 C -0.576 4.576 21 H 0.187 0.813 22 S 2.620 3.380 23 N -1.227 6.227 24 O -1.012 7.012 25 O -0.998 6.998 26 C 0.059 3.941 27 H 0.093 0.907 28 H 0.103 0.897 29 H 0.047 0.953 30 H 0.076 0.924 31 H 0.065 0.935 32 H 0.095 0.905 33 H 0.025 0.975 34 H -0.008 1.008 35 H 0.267 0.733 36 H 0.109 0.891 37 H 0.082 0.918 38 H 0.147 0.853 39 H 0.085 0.915 40 H 0.426 0.574 41 H 0.430 0.570 42 H 0.066 0.934 43 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.285 12.515 -25.230 29.090 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.045 4.045 3 H 0.109 0.891 4 C 0.280 3.720 5 O -0.466 6.466 6 N -0.342 5.342 7 C -0.066 4.066 8 C 0.139 3.861 9 C -0.581 4.581 10 H 0.071 0.929 11 C -0.192 4.192 12 N -0.568 5.568 13 Si 0.791 3.209 14 H -0.191 1.191 15 H -0.190 1.190 16 H -0.210 1.210 17 N -0.246 5.246 18 C -0.090 4.090 19 C -0.144 4.144 20 C -0.689 4.689 21 H 0.205 0.795 22 S 2.713 3.287 23 N -0.906 5.906 24 O -1.001 7.001 25 O -0.987 6.987 26 C -0.071 4.071 27 H 0.112 0.888 28 H 0.122 0.878 29 H 0.066 0.934 30 H 0.095 0.905 31 H 0.083 0.917 32 H 0.113 0.887 33 H 0.043 0.957 34 H 0.010 0.990 35 H 0.076 0.924 36 H 0.127 0.873 37 H 0.100 0.900 38 H 0.165 0.835 39 H 0.103 0.897 40 H 0.258 0.742 41 H 0.261 0.739 42 H 0.085 0.915 43 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -6.727 10.592 -24.322 27.368 hybrid contribution 1.263 0.881 0.678 1.682 sum -5.464 11.473 -23.644 26.843 Atomic orbital electron populations 1.22100 0.89262 1.03277 1.05684 1.21829 0.99278 0.95815 0.87614 0.89148 1.21356 0.80199 0.84848 0.85587 1.90652 1.39913 1.29048 1.86958 1.48127 1.50507 1.29611 1.05934 1.22125 0.94353 0.86396 1.03732 1.18717 0.93751 0.91562 0.82059 1.21729 1.05945 1.19081 1.11312 0.92908 1.25877 1.01810 0.95250 0.96287 1.70062 1.40643 1.27266 1.18846 0.85381 0.78673 0.78278 0.78557 1.19061 1.19013 1.21023 1.64470 1.03698 1.53969 1.02487 1.23481 0.99690 0.99392 0.86430 1.22636 0.87568 1.05096 0.99062 1.31136 1.13403 1.20976 1.03337 0.79525 1.04353 0.74021 0.76419 0.73911 1.52690 1.32174 1.78339 1.27405 1.93547 1.40244 1.87753 1.78593 1.93582 1.75438 1.43673 1.85988 1.22385 0.91212 1.01324 0.92181 0.88810 0.87805 0.93373 0.90521 0.91658 0.88677 0.95710 0.98961 0.92397 0.87317 0.89980 0.83495 0.89659 0.74239 0.73939 0.91550 0.93882 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 8.66 71.98 0.62 -2.26 16 2 C 0.07 1.86 1.44 44.17 0.06 1.92 16 3 H 0.09 2.06 7.13 -2.39 -0.02 2.04 16 4 C 0.49 21.34 6.86 87.66 0.60 21.94 16 5 O -0.59 -32.62 14.52 -3.04 -0.04 -32.66 16 6 N -0.61 -26.40 2.86 -851.13 -2.43 -28.83 16 7 C 0.08 2.18 8.79 127.77 1.12 3.30 16 8 C 0.26 14.59 5.16 85.63 0.44 15.03 16 9 C -0.54 -32.25 9.39 25.60 0.24 -32.01 16 10 H 0.05 3.10 7.81 -2.91 -0.02 3.07 16 11 C 0.01 0.40 5.46 84.66 0.46 0.86 16 12 N -0.93 -57.96 13.29 21.45 0.28 -57.67 16 13 Si 0.97 46.41 29.54 68.60 2.03 48.44 16 14 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 15 H -0.27 -11.89 7.11 99.48 0.71 -11.18 16 16 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 17 N -0.52 -14.47 4.82 -862.23 -4.16 -18.63 16 18 C 0.04 0.53 5.17 86.65 0.45 0.97 16 19 C -0.11 -1.15 6.44 31.80 0.20 -0.94 16 20 C -0.58 -9.96 3.71 31.47 0.12 -9.84 16 21 H 0.19 1.56 8.14 -2.39 -0.02 1.54 16 22 S 2.62 63.11 5.14 -56.49 -0.29 62.82 16 23 N -1.23 -13.77 9.36 37.02 0.35 -13.42 16 24 O -1.01 -34.03 18.10 -127.65 -2.31 -36.35 16 25 O -1.00 -33.81 17.48 -127.65 -2.23 -36.04 16 26 C 0.06 1.75 5.37 86.45 0.46 2.22 16 27 H 0.09 1.54 4.75 -2.39 -0.01 1.53 16 28 H 0.10 1.23 6.45 -2.39 -0.02 1.22 16 29 H 0.05 1.18 8.13 -2.39 -0.02 1.16 16 30 H 0.08 1.78 7.11 -2.39 -0.02 1.76 16 31 H 0.06 1.99 8.07 -2.38 -0.02 1.98 16 32 H 0.09 1.98 5.93 -2.39 -0.01 1.97 16 33 H 0.02 1.39 8.07 -2.38 -0.02 1.38 16 34 H -0.01 -0.51 7.42 -2.39 -0.02 -0.53 16 35 H 0.27 15.58 8.31 -92.71 -0.77 14.81 16 36 H 0.11 1.26 7.50 -2.39 -0.02 1.24 16 37 H 0.08 0.73 8.02 -2.39 -0.02 0.71 16 38 H 0.15 -0.01 8.14 -2.39 -0.02 -0.03 16 39 H 0.08 1.14 7.33 -2.39 -0.02 1.12 16 40 H 0.43 4.08 8.96 -96.74 -0.87 3.21 16 41 H 0.43 1.27 8.79 -96.74 -0.85 0.42 16 42 H 0.07 1.88 7.60 -2.39 -0.02 1.86 16 43 H 0.04 1.73 6.77 -2.38 -0.02 1.72 16 Total: -1.00 -100.08 353.32 -4.69 -104.77 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -0.67 Total: 6.39 kcal Atomic # 6 Polarization: -3.59 SS G_CDS: 4.79 Total: 1.20 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -5.96 Total: -118.56 kcal Atomic # 8 Polarization: -100.47 SS G_CDS: -4.59 Total: -105.05 kcal Atomic # 14 Polarization: 46.41 SS G_CDS: 2.03 Total: 48.44 kcal Atomic # 16 Polarization: 63.11 SS G_CDS: -0.29 Total: 62.82 kcal Total: -100.08 -4.69 -104.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330479659.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.236 kcal (2) G-P(sol) polarization free energy of solvation -100.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -104.768 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.004 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds