Wall clock time and date at job start Fri Apr 10 2020 18:17:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46505 * 119.99832 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 9 9 C 1.50699 * 109.47398 * 89.99557 * 8 6 4 10 10 H 1.08003 * 120.00015 * 0.02562 * 9 8 6 11 11 C 1.37873 * 120.00048 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00473 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99797 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47398 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47236 * 120.00416 * 13 11 9 16 16 H 1.48507 * 109.47103 * 240.00011 * 13 11 9 17 17 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 18 18 C 1.47839 * 111.00015 * 180.84689 * 17 2 1 19 19 C 1.54909 * 104.79437 * 213.63372 * 18 17 2 20 20 C 1.55142 * 101.65329 * 37.06994 * 19 18 17 21 21 H 1.08999 * 110.70493 * 82.72599 * 20 19 18 22 22 S 1.81396 * 110.85523 * 205.89232 * 20 19 18 23 23 N 1.65596 * 104.45290 * 298.68253 * 22 20 19 24 24 O 1.42097 * 110.54442 * 50.31136 * 22 20 19 25 25 O 1.42104 * 110.54285 * 187.05801 * 22 20 19 26 26 C 1.47442 * 111.00010 * 60.00006 * 17 2 1 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.08999 * 109.47333 * 89.99805 * 7 6 4 31 31 H 1.08997 * 109.47024 * 210.00620 * 7 6 4 32 32 H 1.09000 * 109.46875 * 330.00379 * 7 6 4 33 33 H 1.09000 * 109.47082 * 209.99555 * 8 6 4 34 34 H 1.09004 * 109.46754 * 329.99821 * 8 6 4 35 35 H 0.96999 * 120.00725 * 179.97438 * 12 11 9 36 36 H 1.09000 * 110.37457 * 332.46029 * 18 17 2 37 37 H 1.08996 * 110.37699 * 94.80866 * 18 17 2 38 38 H 1.08994 * 110.99549 * 278.97606 * 19 18 17 39 39 H 1.09006 * 111.02348 * 155.17339 * 19 18 17 40 40 H 0.97002 * 120.00190 * 149.99966 * 23 22 20 41 41 H 0.96998 * 119.99983 * 330.00585 * 23 22 20 42 42 H 1.09000 * 109.88895 * 242.66472 * 26 17 2 43 43 H 1.08999 * 109.88919 * 3.68764 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 0.8648 0.9415 2.5890 8 6 2.1954 -0.9402 3.6508 9 6 3.5228 -0.3562 4.0607 10 1 3.9585 0.4490 3.4878 11 6 4.1808 -0.8497 5.1672 12 7 3.6505 -1.8305 5.8646 13 14 5.8258 -0.1253 5.6757 14 1 6.2022 0.9584 4.7329 15 1 5.7195 0.4281 7.0497 16 1 6.8639 -1.1869 5.6487 17 7 2.0198 -0.6925 -1.1994 18 6 3.4975 -0.7299 -1.2233 19 6 3.8713 -0.6370 -2.7238 20 6 2.7949 0.3461 -3.2546 21 1 3.0899 1.3785 -3.0671 22 16 2.4923 0.0790 -5.0231 23 7 3.9518 0.3854 -5.7430 24 8 2.2539 -1.2969 -5.2860 25 8 1.6295 1.0835 -5.5387 26 6 1.5470 -0.0239 -2.4256 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.1833 0.6440 2.6220 31 1 1.1227 1.4667 3.5086 32 1 1.0287 1.6002 1.7362 33 1 1.4775 -0.8150 4.4613 34 1 2.3169 -2.0015 3.4337 35 1 4.1137 -2.1780 6.6429 36 1 3.9075 0.1195 -0.6769 37 1 3.8604 -1.6660 -0.7992 38 1 3.7850 -1.6094 -3.2086 39 1 4.8727 -0.2263 -2.8527 40 1 4.1947 -0.0743 -6.5619 41 1 4.5638 1.0246 -5.3458 42 1 0.9107 -0.7011 -2.9954 43 1 0.9908 0.8768 -2.1659 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000330479660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:39 Heat of formation + Delta-G solvation = -84.726822 kcal Electronic energy + Delta-G solvation = -25958.983612 eV Core-core repulsion = 22167.148896 eV Total energy + Delta-G solvation = -3791.834716 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.08256 -38.17083 -37.28969 -36.22070 -34.90749 -33.86822 -33.44950 -32.48677 -29.75277 -29.07420 -27.49168 -26.15107 -24.33008 -22.79114 -21.70845 -20.97157 -19.62012 -18.64504 -18.08208 -17.67872 -16.87318 -16.65315 -16.39631 -16.19100 -15.51141 -15.13632 -14.67202 -14.27702 -14.12533 -13.98101 -13.61930 -13.38259 -12.93771 -12.61525 -12.45318 -12.37954 -12.36623 -12.25980 -12.19427 -12.01775 -11.83129 -11.67348 -11.48077 -11.27538 -11.13040 -11.02925 -10.93647 -10.83489 -10.62620 -10.57967 -10.18938 -9.65222 -8.91296 -8.48054 -8.28923 -7.67244 -6.08335 -4.13487 -0.07439 2.51214 3.25530 3.31855 3.32458 3.35067 3.39659 3.56531 3.68820 3.94715 4.21785 4.39994 4.42328 4.56407 4.91643 5.02397 5.07813 5.13239 5.15948 5.25119 5.26561 5.38194 5.48137 5.52787 5.61876 5.68378 5.76073 5.82940 5.89034 6.08756 6.20976 6.29892 6.68074 6.81884 6.87878 7.07686 7.41730 7.50632 7.87973 8.19107 8.37737 8.86167 9.06876 9.51819 10.99697 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.003111 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.908728 B = 8997.434286 C = 9685.200271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.056 3.944 3 H 0.062 0.938 4 C 0.511 3.489 5 O -0.524 6.524 6 N -0.601 5.601 7 C 0.081 3.919 8 C 0.246 3.754 9 C -0.526 4.526 10 H 0.056 0.944 11 C 0.061 3.939 12 N -0.893 5.893 13 Si 0.898 3.102 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.282 1.282 17 N -0.498 5.498 18 C 0.057 3.943 19 C -0.108 4.108 20 C -0.615 4.615 21 H 0.141 0.859 22 S 2.625 3.375 23 N -1.249 6.249 24 O -0.953 6.953 25 O -0.963 6.963 26 C 0.069 3.931 27 H 0.071 0.929 28 H 0.080 0.920 29 H 0.061 0.939 30 H 0.049 0.951 31 H 0.073 0.927 32 H 0.056 0.944 33 H 0.032 0.968 34 H 0.044 0.956 35 H 0.263 0.737 36 H 0.049 0.951 37 H 0.110 0.890 38 H 0.095 0.905 39 H 0.089 0.911 40 H 0.420 0.580 41 H 0.413 0.587 42 H 0.085 0.915 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.515 8.454 -19.375 21.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.056 4.056 3 H 0.080 0.920 4 C 0.296 3.704 5 O -0.400 6.400 6 N -0.334 5.334 7 C -0.063 4.063 8 C 0.127 3.873 9 C -0.565 4.565 10 H 0.074 0.926 11 C -0.141 4.141 12 N -0.532 5.532 13 Si 0.726 3.274 14 H -0.199 1.199 15 H -0.209 1.209 16 H -0.208 1.208 17 N -0.222 5.222 18 C -0.070 4.070 19 C -0.147 4.147 20 C -0.726 4.726 21 H 0.159 0.841 22 S 2.715 3.285 23 N -0.922 5.922 24 O -0.943 6.943 25 O -0.953 6.953 26 C -0.061 4.061 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.080 0.920 30 H 0.067 0.933 31 H 0.092 0.908 32 H 0.074 0.926 33 H 0.050 0.950 34 H 0.063 0.937 35 H 0.073 0.927 36 H 0.067 0.933 37 H 0.128 0.872 38 H 0.114 0.886 39 H 0.108 0.892 40 H 0.250 0.750 41 H 0.239 0.761 42 H 0.103 0.897 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -3.318 7.001 -19.581 21.058 hybrid contribution 2.032 1.731 0.791 2.784 sum -1.286 8.731 -18.790 20.759 Atomic orbital electron populations 1.22138 0.92440 1.03953 1.02958 1.21889 0.97226 0.96000 0.90519 0.91996 1.19959 0.81249 0.85250 0.83939 1.90648 1.37352 1.26129 1.85864 1.48100 1.49886 1.28228 1.07214 1.21795 0.93952 0.88170 1.02378 1.19288 0.94144 0.93765 0.80065 1.21446 1.04882 1.18986 1.11220 0.92574 1.24937 0.97941 0.94955 0.96276 1.69936 1.38930 1.25989 1.18368 0.86450 0.83770 0.79000 0.78201 1.19929 1.20941 1.20840 1.63430 1.10001 1.49367 0.99452 1.23077 0.86369 1.03956 0.93642 1.22685 0.96161 0.97924 0.97931 1.31746 1.07101 1.09589 1.24159 0.84135 1.04546 0.73175 0.74531 0.76204 1.53170 1.39914 1.58703 1.40401 1.93623 1.83740 1.33793 1.83128 1.93620 1.64216 1.61202 1.76216 1.22598 0.93052 0.98801 0.91640 0.91008 0.90160 0.92013 0.93288 0.90817 0.92563 0.94998 0.93748 0.92719 0.93271 0.87182 0.88617 0.89248 0.75029 0.76105 0.89716 0.90455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.89 8.70 37.16 0.32 -1.56 16 2 C 0.06 0.82 1.27 -68.86 -0.09 0.73 16 3 H 0.06 0.82 7.36 -51.93 -0.38 0.44 16 4 C 0.51 10.31 6.79 -10.98 -0.07 10.24 16 5 O -0.52 -12.71 13.86 5.56 0.08 -12.63 16 6 N -0.60 -12.37 2.86 -182.95 -0.52 -12.89 16 7 C 0.08 1.22 8.80 59.85 0.53 1.75 16 8 C 0.25 6.34 5.16 -5.20 -0.03 6.31 16 9 C -0.53 -14.64 9.39 -34.44 -0.32 -14.97 16 10 H 0.06 1.56 7.81 -52.48 -0.41 1.15 16 11 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 12 N -0.89 -26.27 13.29 55.43 0.74 -25.53 16 13 Si 0.90 21.47 29.54 -169.99 -5.02 16.45 16 14 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 16 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 17 N -0.50 -7.13 4.83 -224.68 -1.09 -8.21 16 18 C 0.06 0.80 5.32 -2.30 -0.01 0.79 16 19 C -0.11 -1.03 6.51 -24.59 -0.16 -1.19 16 20 C -0.62 -5.10 3.67 -24.91 -0.09 -5.19 16 21 H 0.14 0.80 8.14 -51.93 -0.42 0.37 16 22 S 2.63 23.02 5.32 -107.50 -0.57 22.45 16 23 N -1.25 -6.39 9.33 60.35 0.56 -5.83 16 24 O -0.95 -11.88 17.70 -57.54 -1.02 -12.90 16 25 O -0.96 -11.61 18.10 -57.54 -1.04 -12.65 16 26 C 0.07 0.74 5.76 -2.84 -0.02 0.73 16 27 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.08 0.88 4.53 -51.93 -0.24 0.64 16 29 H 0.06 0.58 6.50 -51.93 -0.34 0.25 16 30 H 0.05 0.63 6.95 -51.93 -0.36 0.27 16 31 H 0.07 1.15 8.07 -51.93 -0.42 0.73 16 32 H 0.06 0.69 6.01 -51.93 -0.31 0.38 16 33 H 0.03 0.83 8.07 -51.93 -0.42 0.41 16 34 H 0.04 1.30 7.42 -51.93 -0.39 0.91 16 35 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 36 H 0.05 0.71 7.77 -51.93 -0.40 0.30 16 37 H 0.11 1.87 6.95 -51.93 -0.36 1.50 16 38 H 0.10 0.94 7.70 -51.93 -0.40 0.54 16 39 H 0.09 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.42 1.73 8.96 -34.47 -0.31 1.43 16 41 H 0.41 1.03 8.96 -34.47 -0.31 0.72 16 42 H 0.08 0.89 7.78 -51.93 -0.40 0.48 16 43 H 0.08 0.69 6.34 -51.93 -0.33 0.36 16 LS Contribution 352.89 15.07 5.32 5.32 Total: -1.00 -38.47 352.89 -8.79 -47.26 By element: Atomic # 1 Polarization: 6.10 SS G_CDS: -6.18 Total: -0.08 kcal Atomic # 6 Polarization: -0.70 SS G_CDS: -0.04 Total: -0.74 kcal Atomic # 7 Polarization: -52.15 SS G_CDS: -0.31 Total: -52.46 kcal Atomic # 8 Polarization: -36.20 SS G_CDS: -1.98 Total: -38.19 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.02 Total: 16.45 kcal Atomic # 16 Polarization: 23.02 SS G_CDS: -0.57 Total: 22.45 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -38.47 -8.79 -47.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330479660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.469 kcal (2) G-P(sol) polarization free energy of solvation -38.472 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds