Wall clock time and date at job start Fri Apr 10 2020 18:17:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09002 * 109.47070 * 2 1 4 4 C 1.50703 * 109.46966 * 119.99910 * 2 1 3 5 5 O 1.21278 * 119.99985 * 119.99692 * 4 2 1 6 6 N 1.34777 * 120.00161 * 300.00385 * 4 2 1 7 7 C 1.46505 * 119.99832 * 359.97438 * 6 4 2 8 8 C 1.46496 * 120.00271 * 180.02562 * 6 4 2 9 9 C 1.50699 * 109.47398 * 89.99557 * 8 6 4 10 10 H 1.08003 * 120.00015 * 0.02562 * 9 8 6 11 11 C 1.37873 * 120.00048 * 180.02562 * 9 8 6 12 12 N 1.31511 * 120.00473 * 0.02562 * 11 9 8 13 13 Si 1.86800 * 119.99797 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47398 * 359.97438 * 13 11 9 15 15 H 1.48498 * 109.47236 * 120.00416 * 13 11 9 16 16 H 1.48507 * 109.47103 * 240.00011 * 13 11 9 17 17 N 1.46899 * 109.47394 * 239.99962 * 2 1 3 18 18 C 1.47839 * 111.00015 * 180.84689 * 17 2 1 19 19 C 1.54909 * 104.79437 * 213.63372 * 18 17 2 20 20 C 1.55142 * 101.65329 * 37.06994 * 19 18 17 21 21 H 1.08999 * 110.70493 * 82.72599 * 20 19 18 22 22 S 1.81396 * 110.85523 * 205.89232 * 20 19 18 23 23 N 1.65596 * 104.45290 * 298.68253 * 22 20 19 24 24 O 1.42097 * 110.54442 * 50.31136 * 22 20 19 25 25 O 1.42104 * 110.54285 * 187.05801 * 22 20 19 26 26 C 1.47442 * 111.00010 * 60.00006 * 17 2 1 27 27 H 1.09002 * 109.47075 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.47407 * 300.00400 * 1 2 3 29 29 H 1.09000 * 109.46986 * 60.00171 * 1 2 3 30 30 H 1.08999 * 109.47333 * 89.99805 * 7 6 4 31 31 H 1.08997 * 109.47024 * 210.00620 * 7 6 4 32 32 H 1.09000 * 109.46875 * 330.00379 * 7 6 4 33 33 H 1.09000 * 109.47082 * 209.99555 * 8 6 4 34 34 H 1.09004 * 109.46754 * 329.99821 * 8 6 4 35 35 H 0.96999 * 120.00725 * 179.97438 * 12 11 9 36 36 H 1.09000 * 110.37457 * 332.46029 * 18 17 2 37 37 H 1.08996 * 110.37699 * 94.80866 * 18 17 2 38 38 H 1.08994 * 110.99549 * 278.97606 * 19 18 17 39 39 H 1.09006 * 111.02348 * 155.17339 * 19 18 17 40 40 H 0.97002 * 120.00190 * 149.99966 * 23 22 20 41 41 H 0.96998 * 119.99983 * 330.00585 * 23 22 20 42 42 H 1.09000 * 109.88895 * 242.66472 * 26 17 2 43 43 H 1.08999 * 109.88919 * 3.68764 * 26 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7295 -1.6965 1.1193 6 7 1.7067 -0.2500 2.4546 7 6 0.8648 0.9415 2.5890 8 6 2.1954 -0.9402 3.6508 9 6 3.5228 -0.3562 4.0607 10 1 3.9585 0.4490 3.4878 11 6 4.1808 -0.8497 5.1672 12 7 3.6505 -1.8305 5.8646 13 14 5.8258 -0.1253 5.6757 14 1 6.2022 0.9584 4.7329 15 1 5.7195 0.4281 7.0497 16 1 6.8639 -1.1869 5.6487 17 7 2.0198 -0.6925 -1.1994 18 6 3.4975 -0.7299 -1.2233 19 6 3.8713 -0.6370 -2.7238 20 6 2.7949 0.3461 -3.2546 21 1 3.0899 1.3785 -3.0671 22 16 2.4923 0.0790 -5.0231 23 7 3.9518 0.3854 -5.7430 24 8 2.2539 -1.2969 -5.2860 25 8 1.6295 1.0835 -5.5387 26 6 1.5470 -0.0239 -2.4256 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.1833 0.6440 2.6220 31 1 1.1227 1.4667 3.5086 32 1 1.0287 1.6002 1.7362 33 1 1.4775 -0.8150 4.4613 34 1 2.3169 -2.0015 3.4337 35 1 4.1137 -2.1780 6.6429 36 1 3.9075 0.1195 -0.6769 37 1 3.8604 -1.6660 -0.7992 38 1 3.7850 -1.6094 -3.2086 39 1 4.8727 -0.2263 -2.8527 40 1 4.1947 -0.0743 -6.5619 41 1 4.5638 1.0246 -5.3458 42 1 0.9107 -0.7011 -2.9954 43 1 0.9908 0.8768 -2.1659 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000330479660.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:38 Heat of formation + Delta-G solvation = -119.264079 kcal Electronic energy + Delta-G solvation = -25960.481260 eV Core-core repulsion = 22167.148896 eV Total energy + Delta-G solvation = -3793.332364 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.35686 -39.41999 -38.11571 -37.03731 -36.60653 -35.16600 -34.34313 -33.94336 -30.78351 -30.25602 -29.07202 -27.57842 -25.81061 -24.30288 -22.60278 -22.11172 -20.29549 -20.06833 -18.84316 -18.68794 -18.30601 -17.92563 -17.64151 -17.19045 -16.78510 -16.41206 -16.15256 -15.64552 -15.28737 -15.14535 -14.59886 -14.51156 -14.21880 -14.11060 -13.76518 -13.51065 -13.32081 -13.25270 -13.20271 -13.12903 -13.07098 -12.91333 -12.77696 -12.59634 -12.54284 -12.45149 -12.24410 -12.10375 -11.95049 -11.68055 -11.59732 -11.16814 -10.66189 -10.45323 -9.40668 -9.35693 -8.23047 -6.38432 -0.77378 1.35624 1.37913 1.49411 1.84980 1.90711 2.21123 2.39929 2.65667 2.85717 3.00464 3.06454 3.34961 3.56641 3.72494 3.87866 4.04034 4.08635 4.17558 4.29158 4.40077 4.41626 4.62337 4.63511 4.72695 4.76008 4.86158 4.91360 4.98741 5.01177 5.08364 5.22751 5.28611 5.30174 5.55587 5.79891 5.86620 5.93970 6.05303 6.40015 6.69843 6.80114 7.27996 7.50992 8.84137 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.022183 B = 0.003111 C = 0.002890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1261.908728 B = 8997.434286 C = 9685.200271 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.067 3.933 3 H 0.089 0.911 4 C 0.498 3.502 5 O -0.579 6.579 6 N -0.609 5.609 7 C 0.075 3.925 8 C 0.261 3.739 9 C -0.540 4.540 10 H 0.054 0.946 11 C 0.006 3.994 12 N -0.929 5.929 13 Si 0.969 3.031 14 H -0.265 1.265 15 H -0.270 1.270 16 H -0.283 1.283 17 N -0.524 5.524 18 C 0.053 3.947 19 C -0.102 4.102 20 C -0.600 4.600 21 H 0.178 0.822 22 S 2.649 3.351 23 N -1.235 6.235 24 O -0.995 6.995 25 O -0.994 6.994 26 C 0.056 3.944 27 H 0.051 0.949 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.075 0.925 31 H 0.066 0.934 32 H 0.093 0.907 33 H 0.022 0.978 34 H -0.005 1.005 35 H 0.267 0.733 36 H 0.044 0.956 37 H 0.066 0.934 38 H 0.087 0.913 39 H 0.124 0.876 40 H 0.427 0.573 41 H 0.428 0.572 42 H 0.083 0.917 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.120 11.650 -20.905 24.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.044 4.044 3 H 0.106 0.894 4 C 0.286 3.714 5 O -0.458 6.458 6 N -0.341 5.341 7 C -0.067 4.067 8 C 0.140 3.860 9 C -0.579 4.579 10 H 0.072 0.928 11 C -0.193 4.193 12 N -0.569 5.569 13 Si 0.793 3.207 14 H -0.189 1.189 15 H -0.195 1.195 16 H -0.208 1.208 17 N -0.249 5.249 18 C -0.075 4.075 19 C -0.141 4.141 20 C -0.711 4.711 21 H 0.196 0.804 22 S 2.740 3.260 23 N -0.913 5.913 24 O -0.984 6.984 25 O -0.983 6.983 26 C -0.072 4.072 27 H 0.070 0.930 28 H 0.112 0.888 29 H 0.115 0.885 30 H 0.094 0.906 31 H 0.084 0.916 32 H 0.112 0.888 33 H 0.040 0.960 34 H 0.013 0.987 35 H 0.076 0.924 36 H 0.062 0.938 37 H 0.084 0.916 38 H 0.106 0.894 39 H 0.142 0.858 40 H 0.259 0.741 41 H 0.258 0.742 42 H 0.101 0.899 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -2.954 10.244 -21.143 23.679 hybrid contribution 1.891 0.685 1.275 2.381 sum -1.064 10.928 -19.868 22.700 Atomic orbital electron populations 1.22181 0.90102 1.03506 1.05342 1.21828 0.98814 0.95981 0.87799 0.89395 1.21090 0.80182 0.84827 0.85269 1.90625 1.39719 1.28700 1.86785 1.48110 1.50484 1.29554 1.05991 1.22118 0.94341 0.86523 1.03723 1.18722 0.93737 0.91640 0.81917 1.21711 1.05816 1.18973 1.11371 0.92800 1.25883 1.01883 0.95246 0.96270 1.70061 1.40692 1.27263 1.18909 0.85346 0.78633 0.78272 0.78402 1.18923 1.19492 1.20847 1.63284 1.10131 1.50941 1.00556 1.22930 0.86644 1.01460 0.96437 1.22661 0.98441 0.98477 0.94490 1.31646 1.05409 1.11312 1.22705 0.80425 1.03582 0.73345 0.72991 0.76074 1.52773 1.39023 1.59016 1.40455 1.93574 1.84797 1.36110 1.83965 1.93590 1.65963 1.61768 1.77026 1.22752 0.94324 0.99760 0.90402 0.92955 0.88798 0.88538 0.90632 0.91565 0.88832 0.95963 0.98703 0.92421 0.93782 0.91605 0.89432 0.85755 0.74136 0.74230 0.89891 0.87725 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.26 8.70 71.98 0.63 -2.64 16 2 C 0.07 1.87 1.27 44.17 0.06 1.93 16 3 H 0.09 2.00 7.36 -2.39 -0.02 1.98 16 4 C 0.50 20.51 6.79 87.66 0.60 21.11 16 5 O -0.58 -29.84 13.86 -3.02 -0.04 -29.89 16 6 N -0.61 -25.38 2.86 -851.13 -2.43 -27.81 16 7 C 0.07 2.11 8.80 127.77 1.12 3.24 16 8 C 0.26 14.09 5.16 85.63 0.44 14.53 16 9 C -0.54 -30.83 9.39 25.60 0.24 -30.59 16 10 H 0.05 3.02 7.81 -2.91 -0.02 3.00 16 11 C 0.01 0.34 5.46 84.65 0.46 0.81 16 12 N -0.93 -56.24 13.29 21.45 0.28 -55.96 16 13 Si 0.97 44.33 29.54 68.60 2.03 46.35 16 14 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 15 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 16 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 17 N -0.52 -14.51 4.83 -864.76 -4.18 -18.69 16 18 C 0.05 1.50 5.32 86.78 0.46 1.96 16 19 C -0.10 -1.75 6.51 31.98 0.21 -1.54 16 20 C -0.60 -7.98 3.67 31.78 0.12 -7.87 16 21 H 0.18 1.07 8.14 -2.39 -0.02 1.05 16 22 S 2.65 40.41 5.32 -56.49 -0.30 40.11 16 23 N -1.23 -9.01 9.33 37.02 0.35 -8.67 16 24 O -0.99 -23.87 17.70 -127.65 -2.26 -26.12 16 25 O -0.99 -21.64 18.10 -127.65 -2.31 -23.95 16 26 C 0.06 1.06 5.76 86.65 0.50 1.56 16 27 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.09 1.71 4.53 -2.39 -0.01 1.70 16 29 H 0.10 1.40 6.50 -2.39 -0.02 1.38 16 30 H 0.08 1.74 6.95 -2.39 -0.02 1.73 16 31 H 0.07 1.98 8.07 -2.39 -0.02 1.96 16 32 H 0.09 1.94 6.01 -2.39 -0.01 1.93 16 33 H 0.02 1.22 8.07 -2.39 -0.02 1.20 16 34 H -0.01 -0.33 7.42 -2.39 -0.02 -0.34 16 35 H 0.27 15.09 8.31 -92.71 -0.77 14.32 16 36 H 0.04 1.24 7.77 -2.39 -0.02 1.22 16 37 H 0.07 2.41 6.95 -2.39 -0.02 2.39 16 38 H 0.09 1.66 7.70 -2.39 -0.02 1.64 16 39 H 0.12 1.24 8.14 -2.38 -0.02 1.22 16 40 H 0.43 2.45 8.96 -96.74 -0.87 1.58 16 41 H 0.43 0.51 8.96 -96.75 -0.87 -0.36 16 42 H 0.08 1.59 7.78 -2.39 -0.02 1.57 16 43 H 0.10 1.39 6.34 -2.39 -0.02 1.37 16 Total: -1.00 -89.61 352.89 -4.72 -94.33 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -0.68 Total: 7.81 kcal Atomic # 6 Polarization: -2.34 SS G_CDS: 4.83 Total: 2.49 kcal Atomic # 7 Polarization: -105.15 SS G_CDS: -5.98 Total: -111.13 kcal Atomic # 8 Polarization: -75.35 SS G_CDS: -4.61 Total: -79.96 kcal Atomic # 14 Polarization: 44.33 SS G_CDS: 2.03 Total: 46.35 kcal Atomic # 16 Polarization: 40.41 SS G_CDS: -0.30 Total: 40.11 kcal Total: -89.61 -4.72 -94.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000330479660.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.933 kcal (2) G-P(sol) polarization free energy of solvation -89.611 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.720 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -94.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds