Wall clock time and date at job start Fri Apr 10 2020 18:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46908 * 2 1 4 4 C 1.50698 * 109.47215 * 120.00105 * 2 1 3 5 5 H 1.08003 * 119.99855 * 114.60547 * 4 2 1 6 6 C 1.37877 * 120.00082 * 294.60128 * 4 2 1 7 7 N 1.31513 * 120.00084 * 1.23141 * 6 4 2 8 8 Si 1.86794 * 119.99954 * 181.23524 * 6 4 2 9 9 H 1.48503 * 109.47354 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47381 * 119.99950 * 8 6 4 11 11 H 1.48498 * 109.47091 * 240.00078 * 8 6 4 12 12 N 1.46503 * 109.46952 * 240.00208 * 2 1 3 13 13 C 1.46502 * 119.99687 * 306.89729 * 12 2 1 14 14 S 1.65604 * 120.00030 * 126.89517 * 12 2 1 15 15 O 1.42102 * 106.39661 * 143.26474 * 14 12 2 16 16 O 1.42097 * 106.39913 * 10.34458 * 14 12 2 17 17 N 1.65600 * 107.21717 * 256.80391 * 14 12 2 18 18 C 1.46496 * 119.99904 * 59.41371 * 17 14 12 19 19 C 1.52992 * 112.85518 * 42.41523 * 18 17 14 20 20 C 1.50702 * 109.47513 * 63.09563 * 19 18 17 21 21 N 1.29046 * 119.99161 * 357.34719 * 20 19 18 22 22 O 1.34910 * 120.00699 * 177.06730 * 20 19 18 23 23 C 1.53778 * 113.61506 * 173.61437 * 18 17 14 24 24 C 1.53959 * 87.02227 * 89.22779 * 23 18 17 25 25 C 1.53778 * 87.10919 * 25.36095 * 24 23 18 26 26 H 1.08996 * 109.47737 * 65.06858 * 1 2 3 27 27 H 1.09004 * 109.47289 * 185.07274 * 1 2 3 28 28 H 1.09002 * 109.46815 * 305.06463 * 1 2 3 29 29 H 0.96993 * 120.00102 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47386 * 269.99532 * 13 12 2 31 31 H 1.09002 * 109.47370 * 30.00362 * 13 12 2 32 32 H 1.09010 * 109.46862 * 149.99781 * 13 12 2 33 33 H 0.96998 * 119.99891 * 239.40464 * 17 14 12 34 34 H 1.09009 * 109.47541 * 303.09876 * 19 18 17 35 35 H 1.09000 * 109.47693 * 183.09699 * 19 18 17 36 36 H 0.96997 * 119.99716 * 185.03085 * 21 20 19 37 37 H 0.96699 * 114.00796 * 185.04335 * 22 20 19 38 38 H 1.08998 * 113.61643 * 203.74355 * 23 18 17 39 39 H 1.09002 * 113.61285 * 334.65018 * 23 18 17 40 40 H 1.09004 * 113.53236 * 270.81841 * 24 23 18 41 41 H 1.08999 * 113.66948 * 139.93582 * 24 23 18 42 42 H 1.08998 * 113.61718 * 220.08755 * 25 24 23 43 43 H 1.09005 * 113.60988 * 89.19429 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5795 -1.6365 1.1337 6 6 1.7935 -0.1781 2.4797 7 7 1.1064 0.9370 2.5989 8 14 2.4459 -1.0405 4.0027 9 1 3.1807 -2.2669 3.6007 10 1 3.3641 -0.1297 4.7324 11 1 1.3112 -1.4112 4.8860 12 7 2.0183 -0.6906 -1.1962 13 6 1.5442 -2.0415 -1.5069 14 16 3.1061 0.0559 -2.1972 15 8 3.9905 -0.9575 -2.6555 16 8 3.5466 1.2210 -1.5134 17 7 2.2689 0.5818 -3.5257 18 6 1.1595 1.5252 -3.3662 19 6 1.4673 2.6406 -2.3654 20 6 2.6214 3.4665 -2.8726 21 7 3.2126 3.1417 -3.9728 22 8 3.0328 4.5484 -2.1797 23 6 0.5876 2.0346 -4.6997 24 6 -0.3664 0.8269 -4.6597 25 6 -0.1991 0.8443 -3.1311 26 1 -0.3634 0.4332 -0.9318 27 1 -0.3634 -1.0237 0.0909 28 1 -0.3633 0.5904 0.8412 29 1 0.9387 1.3116 3.4777 30 1 2.2015 -2.7740 -1.0383 31 1 0.5304 -2.1673 -1.1267 32 1 1.5480 -2.1885 -2.5870 33 1 2.5131 0.2653 -4.4095 34 1 1.7298 2.2026 -1.4023 35 1 0.5896 3.2762 -2.2482 36 1 4.0003 3.6283 -4.2619 37 1 3.7264 5.0577 -2.6207 38 1 0.0792 2.9954 -4.6181 39 1 1.3018 2.0010 -5.5224 40 1 0.0417 -0.0660 -5.1333 41 1 -1.3789 1.0578 -4.9908 42 1 -0.1192 -0.1489 -2.6893 43 1 -0.9230 1.4789 -2.6199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000332067987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:57 Heat of formation + Delta-G solvation = -66.916191 kcal Electronic energy + Delta-G solvation = -28021.673491 eV Core-core repulsion = 24230.611102 eV Total energy + Delta-G solvation = -3791.062389 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.88061 -38.32870 -36.56301 -36.11757 -35.09425 -33.14865 -32.53032 -32.00616 -29.52291 -29.02160 -25.97982 -25.44541 -24.87879 -23.65555 -20.76322 -20.64056 -19.44057 -18.26850 -17.96867 -17.19928 -16.87569 -16.24962 -15.87901 -15.22497 -14.97049 -14.73355 -14.47405 -14.33536 -13.68357 -13.48161 -13.17492 -13.05254 -12.78877 -12.41323 -12.19789 -12.00948 -11.75810 -11.59564 -11.52749 -11.35301 -11.18462 -11.09909 -10.97521 -10.75474 -10.70449 -10.50786 -10.35184 -10.22463 -9.97058 -9.81956 -9.56506 -9.28653 -9.23091 -8.94400 -8.42537 -7.91886 -6.05360 -4.10154 1.32436 2.70336 3.29615 3.38093 3.42552 3.59640 3.67434 4.22549 4.43820 4.69958 4.72367 4.80965 4.98868 5.03906 5.19291 5.27444 5.41611 5.57689 5.63839 5.83745 5.86907 5.98180 6.07899 6.10895 6.14408 6.27826 6.30294 6.39704 6.51027 6.61202 6.71812 6.80809 6.82003 7.00929 7.04396 7.35824 7.54989 7.66657 7.84097 8.02886 8.30322 8.62437 8.93025 9.55635 11.01242 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.005817 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.331763 B = 4812.510270 C = 5101.093396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.267 3.733 3 H 0.066 0.934 4 C -0.523 4.523 5 H 0.061 0.939 6 C 0.065 3.935 7 N -0.888 5.888 8 Si 0.894 3.106 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.284 1.284 12 N -0.992 5.992 13 C 0.108 3.892 14 S 2.782 3.218 15 O -1.002 7.002 16 O -0.975 6.975 17 N -1.094 6.094 18 C 0.189 3.811 19 C -0.079 4.079 20 C 0.397 3.603 21 N -0.753 5.753 22 O -0.525 6.525 23 C -0.119 4.119 24 C -0.142 4.142 25 C -0.155 4.155 26 H 0.027 0.973 27 H 0.035 0.965 28 H 0.081 0.919 29 H 0.262 0.738 30 H 0.048 0.952 31 H 0.072 0.928 32 H 0.045 0.955 33 H 0.411 0.589 34 H 0.127 0.873 35 H 0.103 0.897 36 H 0.328 0.672 37 H 0.389 0.611 38 H 0.082 0.918 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.065 0.935 42 H 0.087 0.913 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.055 3.477 -13.933 14.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.164 3.836 3 H 0.084 0.916 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.722 3.278 9 H -0.198 1.198 10 H -0.210 1.210 11 H -0.210 1.210 12 N -0.835 5.835 13 C -0.038 4.038 14 S 2.792 3.208 15 O -0.986 6.986 16 O -0.958 6.958 17 N -0.851 5.851 18 C 0.098 3.902 19 C -0.118 4.118 20 C 0.168 3.832 21 N -0.399 5.399 22 O -0.319 6.319 23 C -0.158 4.158 24 C -0.179 4.179 25 C -0.194 4.194 26 H 0.046 0.954 27 H 0.054 0.946 28 H 0.100 0.900 29 H 0.072 0.928 30 H 0.067 0.933 31 H 0.091 0.909 32 H 0.064 0.936 33 H 0.245 0.755 34 H 0.145 0.855 35 H 0.121 0.879 36 H 0.145 0.855 37 H 0.242 0.758 38 H 0.101 0.899 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.084 0.916 42 H 0.105 0.895 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -3.843 2.986 -13.568 14.414 hybrid contribution 1.198 0.465 0.561 1.402 sum -2.645 3.451 -13.007 13.715 Atomic orbital electron populations 1.22269 0.98282 1.00435 1.00316 1.18782 0.91351 0.93191 0.80286 0.91644 1.21424 1.35599 1.08802 0.90403 0.92073 1.24886 0.95000 0.94952 0.98903 1.69886 1.39475 1.19487 1.23809 0.86510 0.78705 0.79712 0.82899 1.19786 1.20954 1.21029 1.57693 1.63952 1.24336 1.37532 1.21149 1.00908 0.83861 0.97929 1.01868 0.73361 0.73306 0.72303 1.93535 1.63164 1.59620 1.82271 1.93575 1.79714 1.49091 1.73435 1.55568 1.47773 1.57685 1.24050 1.20496 0.85549 0.88006 0.96121 1.21150 0.93746 0.95350 1.01507 1.24245 0.92065 0.82966 0.83889 1.69653 1.16031 1.37914 1.16301 1.84875 1.56188 1.38883 1.51909 1.23112 0.97905 0.97721 0.97037 1.22871 0.99538 0.98795 0.96723 1.23697 0.96424 1.02768 0.96529 0.95382 0.94624 0.90029 0.92820 0.93345 0.90889 0.93631 0.75535 0.85516 0.87923 0.85534 0.75791 0.89935 0.90258 0.90333 0.91613 0.89474 0.88880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.18 8.55 37.16 0.32 -2.86 16 2 C 0.27 6.17 2.25 -69.08 -0.16 6.02 16 3 H 0.07 1.68 5.11 -51.93 -0.27 1.42 16 4 C -0.52 -13.90 8.44 -34.44 -0.29 -14.19 16 5 H 0.06 1.65 7.78 -52.48 -0.41 1.24 16 6 C 0.07 1.75 5.34 -17.82 -0.10 1.66 16 7 N -0.89 -24.32 11.73 55.43 0.65 -23.67 16 8 Si 0.89 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.27 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 12 N -0.99 -19.83 2.77 -115.84 -0.32 -20.15 16 13 C 0.11 1.86 9.37 59.85 0.56 2.42 16 14 S 2.78 54.97 5.70 -107.50 -0.61 54.35 16 15 O -1.00 -22.17 17.65 -57.17 -1.01 -23.18 16 16 O -0.98 -22.03 12.56 -57.17 -0.72 -22.75 16 17 N -1.09 -16.28 4.77 1.19 0.01 -16.27 16 18 C 0.19 2.54 0.66 -131.01 -0.09 2.46 16 19 C -0.08 -1.22 4.59 -27.89 -0.13 -1.34 16 20 C 0.40 6.09 6.59 -13.45 -0.09 6.01 16 21 N -0.75 -10.61 11.44 32.47 0.37 -10.24 16 22 O -0.53 -7.68 13.58 -16.45 -0.22 -7.90 16 23 C -0.12 -1.29 6.38 -25.83 -0.16 -1.45 16 24 C -0.14 -1.41 8.00 -25.83 -0.21 -1.62 16 25 C -0.16 -1.87 5.60 -25.92 -0.15 -2.02 16 26 H 0.03 0.47 4.43 -51.93 -0.23 0.24 16 27 H 0.03 0.71 6.74 -51.93 -0.35 0.36 16 28 H 0.08 1.90 6.59 -51.93 -0.34 1.56 16 29 H 0.26 6.87 8.31 -40.82 -0.34 6.53 16 30 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.07 1.17 6.21 -51.93 -0.32 0.85 16 32 H 0.04 0.65 8.04 -51.92 -0.42 0.23 16 33 H 0.41 5.39 8.79 -34.47 -0.30 5.09 16 34 H 0.13 2.42 3.97 -51.92 -0.21 2.21 16 35 H 0.10 1.33 8.12 -51.93 -0.42 0.91 16 36 H 0.33 4.00 8.58 -40.82 -0.35 3.65 16 37 H 0.39 3.71 8.72 45.56 0.40 4.11 16 38 H 0.08 0.83 8.10 -51.93 -0.42 0.40 16 39 H 0.08 0.88 8.10 -51.93 -0.42 0.46 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 42 H 0.09 1.14 6.24 -51.93 -0.32 0.82 16 43 H 0.09 1.05 7.73 -51.93 -0.40 0.65 16 LS Contribution 342.80 15.07 5.17 5.17 Total: -1.00 -32.98 342.80 -7.38 -40.36 By element: Atomic # 1 Polarization: 18.21 SS G_CDS: -5.19 Total: 13.02 kcal Atomic # 6 Polarization: -4.45 SS G_CDS: -0.48 Total: -4.93 kcal Atomic # 7 Polarization: -71.04 SS G_CDS: 0.71 Total: -70.33 kcal Atomic # 8 Polarization: -51.88 SS G_CDS: -1.95 Total: -53.83 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 54.97 SS G_CDS: -0.61 Total: 54.35 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.98 -7.38 -40.36 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332067987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.554 kcal (2) G-P(sol) polarization free energy of solvation -32.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.362 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.916 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds