Wall clock time and date at job start Fri Apr 10 2020 18:17:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46908 * 2 1 4 4 C 1.50698 * 109.47215 * 120.00105 * 2 1 3 5 5 H 1.08003 * 119.99855 * 114.60547 * 4 2 1 6 6 C 1.37877 * 120.00082 * 294.60128 * 4 2 1 7 7 N 1.31513 * 120.00084 * 1.23141 * 6 4 2 8 8 Si 1.86794 * 119.99954 * 181.23524 * 6 4 2 9 9 H 1.48503 * 109.47354 * 359.97438 * 8 6 4 10 10 H 1.48495 * 109.47381 * 119.99950 * 8 6 4 11 11 H 1.48498 * 109.47091 * 240.00078 * 8 6 4 12 12 N 1.46503 * 109.46952 * 240.00208 * 2 1 3 13 13 C 1.46502 * 119.99687 * 306.89729 * 12 2 1 14 14 S 1.65604 * 120.00030 * 126.89517 * 12 2 1 15 15 O 1.42102 * 106.39661 * 143.26474 * 14 12 2 16 16 O 1.42097 * 106.39913 * 10.34458 * 14 12 2 17 17 N 1.65600 * 107.21717 * 256.80391 * 14 12 2 18 18 C 1.46496 * 119.99904 * 59.41371 * 17 14 12 19 19 C 1.52992 * 112.85518 * 42.41523 * 18 17 14 20 20 C 1.50702 * 109.47513 * 63.09563 * 19 18 17 21 21 N 1.29046 * 119.99161 * 357.34719 * 20 19 18 22 22 O 1.34910 * 120.00699 * 177.06730 * 20 19 18 23 23 C 1.53778 * 113.61506 * 173.61437 * 18 17 14 24 24 C 1.53959 * 87.02227 * 89.22779 * 23 18 17 25 25 C 1.53778 * 87.10919 * 25.36095 * 24 23 18 26 26 H 1.08996 * 109.47737 * 65.06858 * 1 2 3 27 27 H 1.09004 * 109.47289 * 185.07274 * 1 2 3 28 28 H 1.09002 * 109.46815 * 305.06463 * 1 2 3 29 29 H 0.96993 * 120.00102 * 180.02562 * 7 6 4 30 30 H 1.08998 * 109.47386 * 269.99532 * 13 12 2 31 31 H 1.09002 * 109.47370 * 30.00362 * 13 12 2 32 32 H 1.09010 * 109.46862 * 149.99781 * 13 12 2 33 33 H 0.96998 * 119.99891 * 239.40464 * 17 14 12 34 34 H 1.09009 * 109.47541 * 303.09876 * 19 18 17 35 35 H 1.09000 * 109.47693 * 183.09699 * 19 18 17 36 36 H 0.96997 * 119.99716 * 185.03085 * 21 20 19 37 37 H 0.96699 * 114.00796 * 185.04335 * 22 20 19 38 38 H 1.08998 * 113.61643 * 203.74355 * 23 18 17 39 39 H 1.09002 * 113.61285 * 334.65018 * 23 18 17 40 40 H 1.09004 * 113.53236 * 270.81841 * 24 23 18 41 41 H 1.08999 * 113.66948 * 139.93582 * 24 23 18 42 42 H 1.08998 * 113.61718 * 220.08755 * 25 24 23 43 43 H 1.09005 * 113.60988 * 89.19429 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2304 5 1 2.5795 -1.6365 1.1337 6 6 1.7935 -0.1781 2.4797 7 7 1.1064 0.9370 2.5989 8 14 2.4459 -1.0405 4.0027 9 1 3.1807 -2.2669 3.6007 10 1 3.3641 -0.1297 4.7324 11 1 1.3112 -1.4112 4.8860 12 7 2.0183 -0.6906 -1.1962 13 6 1.5442 -2.0415 -1.5069 14 16 3.1061 0.0559 -2.1972 15 8 3.9905 -0.9575 -2.6555 16 8 3.5466 1.2210 -1.5134 17 7 2.2689 0.5818 -3.5257 18 6 1.1595 1.5252 -3.3662 19 6 1.4673 2.6406 -2.3654 20 6 2.6214 3.4665 -2.8726 21 7 3.2126 3.1417 -3.9728 22 8 3.0328 4.5484 -2.1797 23 6 0.5876 2.0346 -4.6997 24 6 -0.3664 0.8269 -4.6597 25 6 -0.1991 0.8443 -3.1311 26 1 -0.3634 0.4332 -0.9318 27 1 -0.3634 -1.0237 0.0909 28 1 -0.3633 0.5904 0.8412 29 1 0.9387 1.3116 3.4777 30 1 2.2015 -2.7740 -1.0383 31 1 0.5304 -2.1673 -1.1267 32 1 1.5480 -2.1885 -2.5870 33 1 2.5131 0.2653 -4.4095 34 1 1.7298 2.2026 -1.4023 35 1 0.5896 3.2762 -2.2482 36 1 4.0003 3.6283 -4.2619 37 1 3.7264 5.0577 -2.6207 38 1 0.0792 2.9954 -4.6181 39 1 1.3018 2.0010 -5.5224 40 1 0.0417 -0.0660 -5.1333 41 1 -1.3789 1.0578 -4.9908 42 1 -0.1192 -0.1489 -2.6893 43 1 -0.9230 1.4789 -2.6199 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000332067987.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:56 Heat of formation + Delta-G solvation = -96.064121 kcal Electronic energy + Delta-G solvation = -28022.937440 eV Core-core repulsion = 24230.611102 eV Total energy + Delta-G solvation = -3792.326338 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.92692 -39.41042 -38.21436 -37.79046 -36.76301 -34.46368 -34.24211 -33.20714 -30.94032 -30.48096 -27.48323 -26.89492 -26.30915 -24.64441 -22.47374 -21.74246 -20.62800 -19.68978 -19.13954 -18.74014 -18.44238 -18.07513 -17.22783 -16.62990 -16.28181 -16.07995 -15.72094 -15.59753 -15.18928 -14.93654 -14.53810 -14.39727 -14.20029 -13.71208 -13.68618 -13.20754 -13.17693 -13.12728 -13.00462 -12.94436 -12.82453 -12.71101 -12.52619 -12.45480 -12.17190 -12.05982 -11.80426 -11.54845 -11.43630 -11.02017 -10.87857 -10.69241 -10.46626 -10.37346 -10.12363 -9.58510 -8.08826 -6.19677 -0.21772 1.39553 1.43346 1.52816 1.54639 2.15964 2.44832 2.65699 2.74974 3.20595 3.56899 3.67131 3.74333 3.86073 4.07546 4.13144 4.24015 4.31244 4.58208 4.72450 4.78177 4.89066 5.00786 5.03363 5.08736 5.12322 5.18401 5.24721 5.28709 5.31197 5.32610 5.39195 5.47540 5.68000 5.73622 5.80525 5.98671 6.08933 6.20664 6.34738 6.39977 6.88841 7.48469 7.56073 8.95644 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.015387 B = 0.005817 C = 0.005488 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1819.331763 B = 4812.510270 C = 5101.093396 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.275 3.725 3 H 0.039 0.961 4 C -0.542 4.542 5 H 0.048 0.952 6 C 0.022 3.978 7 N -0.908 5.908 8 Si 0.944 3.056 9 H -0.274 1.274 10 H -0.286 1.286 11 H -0.273 1.273 12 N -0.995 5.995 13 C 0.101 3.899 14 S 2.794 3.206 15 O -1.030 7.030 16 O -1.007 7.007 17 N -1.075 6.075 18 C 0.176 3.824 19 C -0.087 4.087 20 C 0.385 3.615 21 N -0.748 5.748 22 O -0.540 6.540 23 C -0.107 4.107 24 C -0.127 4.127 25 C -0.161 4.161 26 H 0.063 0.937 27 H 0.039 0.961 28 H 0.053 0.947 29 H 0.263 0.737 30 H 0.034 0.966 31 H 0.085 0.915 32 H 0.078 0.922 33 H 0.422 0.578 34 H 0.090 0.910 35 H 0.122 0.878 36 H 0.337 0.663 37 H 0.407 0.593 38 H 0.095 0.905 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.077 0.923 43 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.355 3.310 -15.681 16.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.171 3.829 3 H 0.056 0.944 4 C -0.582 4.582 5 H 0.066 0.934 6 C -0.178 4.178 7 N -0.547 5.547 8 Si 0.771 3.229 9 H -0.199 1.199 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.837 5.837 13 C -0.045 4.045 14 S 2.803 3.197 15 O -1.014 7.014 16 O -0.991 6.991 17 N -0.836 5.836 18 C 0.086 3.914 19 C -0.126 4.126 20 C 0.156 3.844 21 N -0.395 5.395 22 O -0.337 6.337 23 C -0.146 4.146 24 C -0.164 4.164 25 C -0.199 4.199 26 H 0.082 0.918 27 H 0.058 0.942 28 H 0.072 0.928 29 H 0.072 0.928 30 H 0.053 0.947 31 H 0.103 0.897 32 H 0.096 0.904 33 H 0.258 0.742 34 H 0.108 0.892 35 H 0.140 0.860 36 H 0.155 0.845 37 H 0.263 0.737 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.103 0.897 41 H 0.104 0.896 42 H 0.096 0.904 43 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.127 2.805 -15.336 16.412 hybrid contribution 1.654 0.569 1.048 2.039 sum -3.473 3.375 -14.288 15.086 Atomic orbital electron populations 1.22068 0.96353 1.00430 1.01021 1.18453 0.92623 0.91597 0.80240 0.94375 1.21771 1.35559 1.08616 0.92237 0.93366 1.25522 0.95419 0.95656 1.01238 1.69981 1.40154 1.20278 1.24266 0.85724 0.78357 0.78612 0.80233 1.19916 1.21184 1.19857 1.57529 1.63787 1.25409 1.37006 1.21360 1.01070 0.82042 1.00028 1.01275 0.73227 0.72495 0.72668 1.93489 1.64569 1.60583 1.82741 1.93542 1.80638 1.50223 1.74649 1.55066 1.47937 1.57602 1.22967 1.20825 0.85367 0.87533 0.97651 1.21227 0.94746 0.96354 1.00315 1.24319 0.92473 0.83350 0.84307 1.69619 1.16229 1.37740 1.15933 1.84835 1.57135 1.39074 1.52608 1.23084 0.97778 0.98806 0.94897 1.22823 1.00473 0.98466 0.94635 1.23756 0.95487 1.02143 0.98558 0.91812 0.94208 0.92776 0.92771 0.94724 0.89678 0.90395 0.74163 0.89199 0.85952 0.84540 0.73656 0.88635 0.90237 0.89720 0.89585 0.90439 0.87952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.72 8.55 71.98 0.62 -5.11 16 2 C 0.27 12.90 2.25 44.24 0.10 13.00 16 3 H 0.04 2.04 5.11 -2.39 -0.01 2.02 16 4 C -0.54 -29.36 8.44 25.60 0.22 -29.14 16 5 H 0.05 2.66 7.78 -2.91 -0.02 2.64 16 6 C 0.02 1.20 5.34 84.65 0.45 1.65 16 7 N -0.91 -50.52 11.73 21.45 0.25 -50.26 16 8 Si 0.94 43.88 29.54 68.60 2.03 45.90 16 9 H -0.27 -12.68 7.11 99.48 0.71 -11.97 16 10 H -0.29 -13.29 7.11 99.48 0.71 -12.59 16 11 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 12 N -1.00 -39.65 2.77 -520.42 -1.44 -41.09 16 13 C 0.10 3.35 9.37 127.77 1.20 4.55 16 14 S 2.79 110.20 5.70 -56.49 -0.32 109.88 16 15 O -1.03 -45.43 17.65 -128.00 -2.26 -47.69 16 16 O -1.01 -46.56 12.56 -128.00 -1.61 -48.16 16 17 N -1.07 -30.36 4.77 -150.15 -0.72 -31.07 16 18 C 0.18 4.39 0.66 4.13 0.00 4.39 16 19 C -0.09 -2.64 4.59 29.85 0.14 -2.50 16 20 C 0.38 11.53 6.59 88.52 0.58 12.11 16 21 N -0.75 -20.10 11.44 -166.07 -1.90 -22.00 16 22 O -0.54 -15.64 13.58 -81.79 -1.11 -16.75 16 23 C -0.11 -1.95 6.38 31.18 0.20 -1.76 16 24 C -0.13 -2.02 8.00 31.18 0.25 -1.77 16 25 C -0.16 -3.42 5.60 31.12 0.17 -3.24 16 26 H 0.06 2.10 4.43 -2.39 -0.01 2.09 16 27 H 0.04 1.56 6.74 -2.38 -0.02 1.54 16 28 H 0.05 2.53 6.59 -2.39 -0.02 2.52 16 29 H 0.26 13.96 8.31 -92.71 -0.77 13.19 16 30 H 0.03 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 2.60 6.21 -2.39 -0.01 2.59 16 32 H 0.08 2.06 8.04 -2.38 -0.02 2.04 16 33 H 0.42 10.16 8.79 -96.75 -0.85 9.31 16 34 H 0.09 3.49 3.97 -2.38 -0.01 3.48 16 35 H 0.12 3.04 8.12 -2.39 -0.02 3.02 16 36 H 0.34 7.79 8.58 -92.71 -0.80 6.99 16 37 H 0.41 7.54 8.72 -74.06 -0.65 6.90 16 38 H 0.10 1.55 8.10 -2.39 -0.02 1.53 16 39 H 0.08 1.49 8.10 -2.39 -0.02 1.47 16 40 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 41 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.08 1.82 6.24 -2.39 -0.01 1.80 16 43 H 0.10 2.00 7.73 -2.38 -0.02 1.98 16 Total: -1.00 -72.01 342.80 -4.36 -76.37 By element: Atomic # 1 Polarization: 33.90 SS G_CDS: -1.21 Total: 32.69 kcal Atomic # 6 Polarization: -11.75 SS G_CDS: 3.93 Total: -7.82 kcal Atomic # 7 Polarization: -140.61 SS G_CDS: -3.81 Total: -144.42 kcal Atomic # 8 Polarization: -107.62 SS G_CDS: -4.98 Total: -112.60 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.90 kcal Atomic # 16 Polarization: 110.20 SS G_CDS: -0.32 Total: 109.88 kcal Total: -72.01 -4.36 -76.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000332067987.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.691 kcal (2) G-P(sol) polarization free energy of solvation -72.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.699 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.373 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.064 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds