Wall clock time and date at job start Fri Apr 10 2020 18:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47187 * 2 1 4 4 C 1.46506 * 119.99549 * 85.00172 * 3 2 1 5 5 C 1.50696 * 109.46871 * 274.99724 * 4 3 2 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 S 1.65600 * 120.00499 * 265.00270 * 3 2 1 14 14 O 1.42105 * 106.40014 * 23.53705 * 13 3 2 15 15 O 1.42094 * 106.40316 * 156.45730 * 13 3 2 16 16 N 1.65603 * 107.21636 * 270.00218 * 13 3 2 17 17 C 1.46926 * 120.62531 * 269.71437 * 16 13 3 18 18 C 1.53625 * 108.53870 * 126.37175 * 17 16 13 19 19 C 1.53039 * 109.24240 * 54.85918 * 18 17 16 20 20 C 1.53048 * 109.53663 * 298.50688 * 19 18 17 21 21 H 1.09000 * 109.52249 * 301.40044 * 20 19 18 22 22 C 1.50695 * 109.49685 * 181.31776 * 20 19 18 23 23 N 1.34777 * 119.99924 * 60.16928 * 22 20 19 24 24 O 1.21285 * 120.00084 * 240.15884 * 22 20 19 25 25 C 1.46925 * 120.63318 * 89.99961 * 16 13 3 26 26 H 1.09003 * 109.47582 * 60.00036 * 1 2 3 27 27 H 1.09004 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47128 * 299.99374 * 1 2 3 29 29 H 1.09003 * 109.47128 * 240.00626 * 2 1 3 30 30 H 1.08999 * 109.47708 * 120.00458 * 2 1 3 31 31 H 1.09005 * 109.46943 * 155.00044 * 4 3 2 32 32 H 1.09002 * 109.47064 * 35.00307 * 4 3 2 33 33 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.58590 * 246.20454 * 17 16 13 35 35 H 1.08998 * 109.59228 * 6.62985 * 17 16 13 36 36 H 1.09000 * 109.63560 * 294.86399 * 18 17 16 37 37 H 1.09006 * 109.45584 * 174.73824 * 18 17 16 38 38 H 1.09006 * 109.46058 * 178.48964 * 19 18 17 39 39 H 1.08992 * 109.46574 * 58.53042 * 19 18 17 40 40 H 0.96999 * 120.00342 * 359.97438 * 23 22 20 41 41 H 0.96998 * 119.99672 * 180.02562 * 23 22 20 42 42 H 1.09002 * 109.58666 * 353.37075 * 25 16 13 43 43 H 1.09002 * 109.58632 * 113.79668 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7287 1.6357 6 1 -0.0228 2.5941 0.9947 7 6 0.7226 3.4680 2.7941 8 7 -0.4314 4.0088 3.1187 9 14 2.2082 3.7013 3.9022 10 1 2.2573 2.6042 4.9018 11 1 3.4459 3.6794 3.0820 12 1 2.1023 5.0059 4.6038 13 16 2.4121 2.1203 -1.4286 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5186 -1.1997 16 7 4.0143 1.8137 -1.7137 17 6 5.0513 2.7291 -1.2181 18 6 6.0673 1.9186 -0.3990 19 6 6.6020 0.7680 -1.2549 20 6 5.4484 -0.1593 -1.6441 21 1 4.9696 -0.5430 -0.7432 22 6 5.9807 -1.3093 -2.4596 23 7 6.8994 -2.1419 -1.9310 24 8 5.5823 -1.4858 -3.5915 25 6 4.4256 0.6246 -2.4724 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.9080 2.8918 1.1514 32 1 2.4690 1.4181 2.0481 33 1 -0.5112 4.5285 3.9338 34 1 5.5530 3.2038 -2.0613 35 1 4.5947 3.4907 -0.5860 36 1 5.5828 1.5158 0.4904 37 1 6.8930 2.5654 -0.1023 38 1 7.3433 0.2065 -0.6862 39 1 7.0645 1.1702 -2.1561 40 1 7.2182 -2.0007 -1.0259 41 1 7.2423 -2.8819 -2.4561 42 1 3.5560 -0.0027 -2.6682 43 1 4.8774 0.9313 -3.4158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336881617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:59 Heat of formation + Delta-G solvation = -118.550533 kcal Electronic energy + Delta-G solvation = -27114.047936 eV Core-core repulsion = 23320.746514 eV Total energy + Delta-G solvation = -3793.301422 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.22747 -37.79741 -36.75146 -36.17491 -35.20344 -34.10709 -32.51884 -32.35010 -31.30643 -30.07704 -27.23634 -24.78504 -24.37340 -22.54248 -21.78766 -21.41601 -20.11543 -18.61638 -17.78291 -17.25044 -17.15814 -16.71851 -16.57039 -15.75097 -15.31982 -14.91865 -14.51970 -14.40436 -14.16630 -13.77295 -13.67990 -13.36313 -13.20032 -12.87587 -12.80945 -12.56117 -12.13800 -11.79177 -11.74286 -11.51327 -11.50558 -11.35873 -11.22828 -11.08982 -11.01937 -11.00824 -10.68685 -10.47594 -10.21098 -10.19402 -10.06394 -9.97825 -9.44886 -8.98322 -8.59874 -8.14320 -6.08308 -4.06952 1.07654 2.38222 3.13737 3.22932 3.29526 3.31794 3.47139 3.99083 4.36603 4.39430 4.50635 4.55221 4.79284 4.94923 5.01755 5.10136 5.18135 5.21717 5.32937 5.37978 5.63008 5.67380 5.69462 5.74759 5.79115 5.87184 5.93736 6.09699 6.11711 6.19397 6.37021 6.47392 6.56489 6.65329 6.73403 7.00917 7.01208 7.13521 7.42483 7.57870 7.98571 8.49303 8.98063 9.50670 11.05079 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.005000 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.345251 B = 5598.977224 C = 6066.507733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.136 3.864 3 N -0.988 5.988 4 C 0.229 3.771 5 C -0.528 4.528 6 H 0.082 0.918 7 C 0.073 3.927 8 N -0.895 5.895 9 Si 0.872 3.128 10 H -0.276 1.276 11 H -0.265 1.265 12 H -0.284 1.284 13 S 2.777 3.223 14 O -0.986 6.986 15 O -0.959 6.959 16 N -1.013 6.013 17 C 0.118 3.882 18 C -0.134 4.134 19 C -0.104 4.104 20 C -0.127 4.127 21 H 0.106 0.894 22 C 0.526 3.474 23 N -0.856 5.856 24 O -0.539 6.539 25 C 0.144 3.856 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.083 0.917 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.031 0.969 32 H 0.027 0.973 33 H 0.264 0.736 34 H 0.070 0.930 35 H 0.095 0.905 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.067 0.933 39 H 0.070 0.930 40 H 0.401 0.599 41 H 0.400 0.600 42 H 0.095 0.905 43 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.753 -10.712 -5.498 21.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.009 3.991 3 N -0.829 5.829 4 C 0.106 3.894 5 C -0.567 4.567 6 H 0.100 0.900 7 C -0.130 4.130 8 N -0.533 5.533 9 Si 0.699 3.301 10 H -0.202 1.202 11 H -0.190 1.190 12 H -0.210 1.210 13 S 2.787 3.213 14 O -0.970 6.970 15 O -0.942 6.942 16 N -0.850 5.850 17 C -0.008 4.008 18 C -0.173 4.173 19 C -0.142 4.142 20 C -0.150 4.150 21 H 0.124 0.876 22 C 0.310 3.690 23 N -0.420 5.420 24 O -0.415 6.415 25 C 0.017 3.983 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.102 0.898 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.049 0.951 32 H 0.045 0.955 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.114 0.886 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.086 0.914 39 H 0.089 0.911 40 H 0.230 0.770 41 H 0.231 0.769 42 H 0.113 0.887 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 16.692 -10.015 -6.631 20.564 hybrid contribution 1.260 -0.335 1.332 1.863 sum 17.952 -10.350 -5.299 21.389 Atomic orbital electron populations 1.22261 0.95894 1.00916 1.04165 1.20981 0.95305 0.81876 1.00901 1.57656 1.78448 1.23091 1.23671 1.19422 0.98244 0.90984 0.80792 1.21429 0.95805 1.31658 1.07837 0.90046 1.24882 0.95630 0.95003 0.97492 1.69895 1.24009 1.34431 1.24988 0.86929 0.83941 0.78022 0.81234 1.20202 1.18966 1.20981 1.02213 0.72417 0.73707 0.73004 1.93554 1.69813 1.76319 1.57273 1.93626 1.84991 1.30040 1.85559 1.58592 1.25430 1.33031 1.67976 1.21514 0.89508 0.91536 0.98239 1.22006 0.99217 0.97307 0.98813 1.21451 0.95755 0.96442 1.00555 1.21769 0.98670 0.94303 1.00301 0.87568 1.20573 0.78380 0.83050 0.87017 1.43887 1.45325 1.32984 1.19787 1.90774 1.58412 1.73305 1.19053 1.21066 0.98253 0.85522 0.93432 0.92697 0.93097 0.89848 0.92154 0.91217 0.95121 0.95507 0.92579 0.91213 0.88645 0.90714 0.90343 0.91400 0.91140 0.77002 0.76900 0.88721 0.90404 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.13 9.83 37.15 0.37 -2.77 16 2 C 0.14 2.26 6.09 -4.05 -0.02 2.23 16 3 N -0.99 -19.23 2.86 -115.66 -0.33 -19.56 16 4 C 0.23 5.10 4.19 -5.19 -0.02 5.08 16 5 C -0.53 -14.48 8.97 -34.44 -0.31 -14.79 16 6 H 0.08 2.46 7.13 -52.49 -0.37 2.09 16 7 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 8 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 9 Si 0.87 20.37 27.47 -169.99 -4.67 15.71 16 10 H -0.28 -6.23 7.11 56.52 0.40 -5.83 16 11 H -0.26 -5.76 6.54 56.52 0.37 -5.39 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 S 2.78 54.33 6.01 -107.50 -0.65 53.68 16 14 O -0.99 -20.77 15.82 -57.17 -0.90 -21.68 16 15 O -0.96 -22.36 15.82 -57.17 -0.90 -23.27 16 16 N -1.01 -14.76 3.34 -113.27 -0.38 -15.14 16 17 C 0.12 1.45 6.41 -3.49 -0.02 1.43 16 18 C -0.13 -1.24 6.10 -26.39 -0.16 -1.40 16 19 C -0.10 -0.80 5.07 -26.69 -0.14 -0.94 16 20 C -0.13 -1.23 2.68 -91.65 -0.25 -1.47 16 21 H 0.11 0.93 8.14 -51.93 -0.42 0.51 16 22 C 0.53 5.28 7.43 -10.99 -0.08 5.20 16 23 N -0.86 -5.00 8.76 31.22 0.27 -4.73 16 24 O -0.54 -7.78 16.76 5.55 0.09 -7.68 16 25 C 0.14 1.86 5.01 -3.71 -0.02 1.84 16 26 H 0.05 1.07 8.14 -51.93 -0.42 0.64 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.08 1.73 6.59 -51.93 -0.34 1.39 16 29 H 0.06 0.88 7.61 -51.93 -0.40 0.49 16 30 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 31 H 0.03 0.69 6.66 -51.93 -0.35 0.34 16 32 H 0.03 0.56 7.43 -51.93 -0.39 0.17 16 33 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 34 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 35 H 0.10 1.35 7.12 -51.93 -0.37 0.98 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 38 H 0.07 0.36 7.54 -51.93 -0.39 -0.04 16 39 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.40 1.26 8.24 -40.82 -0.34 0.92 16 41 H 0.40 1.97 8.93 -40.82 -0.36 1.61 16 42 H 0.09 1.34 7.13 -51.93 -0.37 0.97 16 43 H 0.08 1.00 7.96 -51.93 -0.41 0.59 16 LS Contribution 354.42 15.07 5.34 5.34 Total: -1.00 -36.33 354.42 -8.73 -45.07 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -6.63 Total: 2.12 kcal Atomic # 6 Polarization: -2.88 SS G_CDS: -0.75 Total: -3.63 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: 0.34 Total: -65.65 kcal Atomic # 8 Polarization: -50.91 SS G_CDS: -1.72 Total: -52.63 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.67 Total: 15.71 kcal Atomic # 16 Polarization: 54.33 SS G_CDS: -0.65 Total: 53.68 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -36.33 -8.73 -45.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336881617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.485 kcal (2) G-P(sol) polarization free energy of solvation -36.333 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.733 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -118.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds