Wall clock time and date at job start Fri Apr 10 2020 18:17:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46499 * 109.47187 * 2 1 4 4 C 1.46506 * 119.99549 * 85.00172 * 3 2 1 5 5 C 1.50696 * 109.46871 * 274.99724 * 4 3 2 6 6 H 1.07999 * 120.00319 * 0.02562 * 5 4 3 7 7 C 1.37885 * 119.99717 * 180.02562 * 5 4 3 8 8 N 1.31516 * 119.99913 * 180.02562 * 7 5 4 9 9 Si 1.86798 * 119.99766 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47353 * 269.99586 * 9 7 5 11 11 H 1.48501 * 109.47293 * 30.00037 * 9 7 5 12 12 H 1.48504 * 109.46680 * 149.99835 * 9 7 5 13 13 S 1.65600 * 120.00499 * 265.00270 * 3 2 1 14 14 O 1.42105 * 106.40014 * 23.53705 * 13 3 2 15 15 O 1.42094 * 106.40316 * 156.45730 * 13 3 2 16 16 N 1.65603 * 107.21636 * 270.00218 * 13 3 2 17 17 C 1.46926 * 120.62531 * 269.71437 * 16 13 3 18 18 C 1.53625 * 108.53870 * 126.37175 * 17 16 13 19 19 C 1.53039 * 109.24240 * 54.85918 * 18 17 16 20 20 C 1.53048 * 109.53663 * 298.50688 * 19 18 17 21 21 H 1.09000 * 109.52249 * 301.40044 * 20 19 18 22 22 C 1.50695 * 109.49685 * 181.31776 * 20 19 18 23 23 N 1.34777 * 119.99924 * 60.16928 * 22 20 19 24 24 O 1.21285 * 120.00084 * 240.15884 * 22 20 19 25 25 C 1.46925 * 120.63318 * 89.99961 * 16 13 3 26 26 H 1.09003 * 109.47582 * 60.00036 * 1 2 3 27 27 H 1.09004 * 109.47153 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47128 * 299.99374 * 1 2 3 29 29 H 1.09003 * 109.47128 * 240.00626 * 2 1 3 30 30 H 1.08999 * 109.47708 * 120.00458 * 2 1 3 31 31 H 1.09005 * 109.46943 * 155.00044 * 4 3 2 32 32 H 1.09002 * 109.47064 * 35.00307 * 4 3 2 33 33 H 0.97001 * 119.99646 * 179.97438 * 8 7 5 34 34 H 1.09003 * 109.58590 * 246.20454 * 17 16 13 35 35 H 1.08998 * 109.59228 * 6.62985 * 17 16 13 36 36 H 1.09000 * 109.63560 * 294.86399 * 18 17 16 37 37 H 1.09006 * 109.45584 * 174.73824 * 18 17 16 38 38 H 1.09006 * 109.46058 * 178.48964 * 19 18 17 39 39 H 1.08992 * 109.46574 * 58.53042 * 19 18 17 40 40 H 0.96999 * 120.00342 * 359.97438 * 23 22 20 41 41 H 0.96998 * 119.99672 * 180.02562 * 23 22 20 42 42 H 1.09002 * 109.58666 * 353.37075 * 25 16 13 43 43 H 1.09002 * 109.58632 * 113.79668 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 1.2640 5 6 0.8360 2.7287 1.6357 6 1 -0.0228 2.5941 0.9947 7 6 0.7226 3.4680 2.7941 8 7 -0.4314 4.0088 3.1187 9 14 2.2082 3.7013 3.9022 10 1 2.2573 2.6042 4.9018 11 1 3.4459 3.6794 3.0820 12 1 2.1023 5.0059 4.6038 13 16 2.4121 2.1203 -1.4286 14 8 1.6868 1.4416 -2.4448 15 8 2.3056 3.5186 -1.1997 16 7 4.0143 1.8137 -1.7137 17 6 5.0513 2.7291 -1.2181 18 6 6.0673 1.9186 -0.3990 19 6 6.6020 0.7680 -1.2549 20 6 5.4484 -0.1593 -1.6441 21 1 4.9696 -0.5430 -0.7432 22 6 5.9807 -1.3093 -2.4596 23 7 6.8994 -2.1419 -1.9310 24 8 5.5823 -1.4858 -3.5915 25 6 4.4256 0.6246 -2.4724 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3633 0.5137 0.8901 29 1 1.8933 -0.5137 -0.8901 30 1 1.8934 -0.5139 0.8899 31 1 2.9080 2.8918 1.1514 32 1 2.4690 1.4181 2.0481 33 1 -0.5112 4.5285 3.9338 34 1 5.5530 3.2038 -2.0613 35 1 4.5947 3.4907 -0.5860 36 1 5.5828 1.5158 0.4904 37 1 6.8930 2.5654 -0.1023 38 1 7.3433 0.2065 -0.6862 39 1 7.0645 1.1702 -2.1561 40 1 7.2182 -2.0007 -1.0259 41 1 7.2423 -2.8819 -2.4561 42 1 3.5560 -0.0027 -2.6682 43 1 4.8774 0.9313 -3.4158 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336881617.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:17:59 Heat of formation + Delta-G solvation = -149.829868 kcal Electronic energy + Delta-G solvation = -27115.404310 eV Core-core repulsion = 23320.746514 eV Total energy + Delta-G solvation = -3794.657796 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02037 -38.70987 -38.40033 -37.76426 -36.87924 -34.83662 -34.56825 -33.19748 -32.17405 -31.70773 -29.08481 -25.64041 -25.30582 -24.29708 -23.36080 -22.26850 -20.91717 -19.84502 -19.06595 -18.89248 -18.29882 -18.14848 -17.60953 -17.19717 -16.37725 -16.14686 -15.75466 -15.37568 -15.26201 -15.12112 -14.82009 -14.70612 -14.48768 -14.30984 -14.24712 -13.85142 -13.74942 -13.18302 -13.11591 -13.06377 -12.99768 -12.84293 -12.68656 -12.52423 -12.25716 -12.02921 -11.94877 -11.86493 -11.72196 -11.54486 -11.39549 -10.87233 -10.70807 -10.60089 -10.06338 -9.77434 -8.21687 -6.26509 -0.43705 1.39601 1.44962 1.53725 1.65416 1.95438 2.41097 2.50028 2.68165 3.11745 3.32484 3.55642 3.76970 3.87905 3.95757 4.05905 4.20218 4.31482 4.41382 4.42045 4.48571 4.57266 4.67361 4.75679 4.84342 4.88653 4.92713 4.95184 5.04821 5.07265 5.13237 5.21717 5.40280 5.43519 5.50958 5.55963 5.59391 5.89032 5.95473 6.38561 6.49687 6.77574 7.35632 7.39117 8.95754 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016367 B = 0.005000 C = 0.004614 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1710.345251 B = 5598.977224 C = 6066.507733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.128 3.872 3 N -0.990 5.990 4 C 0.236 3.764 5 C -0.535 4.535 6 H 0.030 0.970 7 C 0.003 3.997 8 N -0.953 5.953 9 Si 0.943 3.057 10 H -0.255 1.255 11 H -0.232 1.232 12 H -0.291 1.291 13 S 2.785 3.215 14 O -1.011 7.011 15 O -1.006 7.006 16 N -1.000 6.000 17 C 0.104 3.896 18 C -0.128 4.128 19 C -0.099 4.099 20 C -0.122 4.122 21 H 0.123 0.877 22 C 0.527 3.473 23 N -0.832 5.832 24 O -0.592 6.592 25 C 0.139 3.861 26 H 0.027 0.973 27 H 0.085 0.915 28 H 0.047 0.953 29 H 0.085 0.915 30 H 0.102 0.898 31 H 0.037 0.963 32 H 0.058 0.942 33 H 0.265 0.735 34 H 0.085 0.915 35 H 0.075 0.925 36 H 0.074 0.926 37 H 0.104 0.896 38 H 0.105 0.895 39 H 0.071 0.929 40 H 0.419 0.581 41 H 0.408 0.592 42 H 0.077 0.923 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.249 -12.726 -4.113 25.959 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.003 3.997 3 N -0.831 5.831 4 C 0.112 3.888 5 C -0.574 4.574 6 H 0.049 0.951 7 C -0.194 4.194 8 N -0.594 5.594 9 Si 0.765 3.235 10 H -0.180 1.180 11 H -0.155 1.155 12 H -0.217 1.217 13 S 2.796 3.204 14 O -0.994 6.994 15 O -0.989 6.989 16 N -0.841 5.841 17 C -0.020 4.020 18 C -0.167 4.167 19 C -0.136 4.136 20 C -0.145 4.145 21 H 0.141 0.859 22 C 0.311 3.689 23 N -0.396 5.396 24 O -0.472 6.472 25 C 0.013 3.987 26 H 0.047 0.953 27 H 0.104 0.896 28 H 0.066 0.934 29 H 0.103 0.897 30 H 0.120 0.880 31 H 0.054 0.946 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.103 0.897 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.122 0.878 38 H 0.123 0.877 39 H 0.089 0.911 40 H 0.251 0.749 41 H 0.240 0.760 42 H 0.096 0.904 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 21.223 -12.075 -5.232 24.972 hybrid contribution -0.202 0.256 0.782 0.848 sum 21.021 -11.819 -4.449 24.523 Atomic orbital electron populations 1.22232 0.97632 1.02215 1.01047 1.21275 0.93913 0.80854 1.03627 1.57557 1.79127 1.23952 1.22449 1.19247 0.95208 0.91793 0.82570 1.21759 0.96796 1.31817 1.07033 0.95145 1.25963 0.99299 0.94557 0.99558 1.70095 1.27173 1.36125 1.25996 0.85785 0.80357 0.78094 0.79223 1.17956 1.15483 1.21709 1.01635 0.73481 0.72546 0.72783 1.93510 1.71457 1.76399 1.58062 1.93557 1.86247 1.33016 1.86120 1.58117 1.23799 1.34169 1.67998 1.21837 0.89468 0.91514 0.99199 1.22008 0.98806 0.97691 0.98218 1.21487 0.95435 0.95810 1.00901 1.21718 0.98583 0.94239 0.99911 0.85946 1.20608 0.78618 0.83397 0.86250 1.43678 1.43478 1.31914 1.20522 1.90767 1.60486 1.74684 1.21298 1.21168 0.98679 0.84903 0.93969 0.95345 0.89587 0.93364 0.89718 0.87979 0.94558 0.92375 0.92649 0.89699 0.90704 0.90683 0.87804 0.87677 0.91055 0.74942 0.76028 0.90445 0.90677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.33 9.83 71.98 0.71 -5.63 16 2 C 0.13 4.09 6.09 86.38 0.53 4.61 16 3 N -0.99 -38.01 2.86 -519.84 -1.48 -39.49 16 4 C 0.24 10.22 4.19 85.63 0.36 10.58 16 5 C -0.53 -30.16 8.97 25.60 0.23 -29.93 16 6 H 0.03 1.97 7.13 -2.91 -0.02 1.94 16 7 C 0.00 0.18 5.47 84.66 0.46 0.64 16 8 N -0.95 -59.93 13.96 21.45 0.30 -59.63 16 9 Si 0.94 41.06 27.47 68.60 1.88 42.94 16 10 H -0.26 -10.21 7.11 99.48 0.71 -9.51 16 11 H -0.23 -8.79 6.54 99.48 0.65 -8.14 16 12 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 13 S 2.79 110.48 6.01 -56.49 -0.34 110.14 16 14 O -1.01 -43.89 15.82 -128.00 -2.03 -45.92 16 15 O -1.01 -48.59 15.82 -128.00 -2.02 -50.61 16 16 N -1.00 -27.96 3.34 -512.28 -1.71 -29.67 16 17 C 0.10 2.36 6.41 86.51 0.55 2.91 16 18 C -0.13 -1.79 6.10 30.82 0.19 -1.60 16 19 C -0.10 -1.04 5.07 30.62 0.16 -0.88 16 20 C -0.12 -1.91 2.68 -11.46 -0.03 -1.94 16 21 H 0.12 1.57 8.14 -2.39 -0.02 1.55 16 22 C 0.53 9.01 7.43 87.66 0.65 9.66 16 23 N -0.83 -6.32 8.76 -173.53 -1.52 -7.84 16 24 O -0.59 -16.30 16.76 -3.05 -0.05 -16.35 16 25 C 0.14 3.39 5.01 86.36 0.43 3.82 16 26 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 27 H 0.09 2.48 8.14 -2.39 -0.02 2.46 16 28 H 0.05 2.09 6.59 -2.39 -0.02 2.08 16 29 H 0.08 2.31 7.61 -2.39 -0.02 2.29 16 30 H 0.10 2.62 8.00 -2.39 -0.02 2.60 16 31 H 0.04 1.55 6.66 -2.38 -0.02 1.54 16 32 H 0.06 2.19 7.43 -2.39 -0.02 2.17 16 33 H 0.26 15.52 8.31 -92.71 -0.77 14.75 16 34 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.07 2.03 7.12 -2.39 -0.02 2.01 16 36 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 37 H 0.10 0.99 8.14 -2.38 -0.02 0.97 16 38 H 0.10 0.40 7.54 -2.38 -0.02 0.39 16 39 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 40 H 0.42 0.40 8.24 -92.71 -0.76 -0.36 16 41 H 0.41 2.55 8.93 -92.71 -0.83 1.73 16 42 H 0.08 2.16 7.13 -2.39 -0.02 2.14 16 43 H 0.07 1.88 7.96 -2.39 -0.02 1.86 16 Total: -1.00 -85.97 354.42 -3.35 -89.32 By element: Atomic # 1 Polarization: 15.46 SS G_CDS: -0.61 Total: 14.85 kcal Atomic # 6 Polarization: -11.97 SS G_CDS: 4.24 Total: -7.74 kcal Atomic # 7 Polarization: -132.23 SS G_CDS: -4.42 Total: -136.64 kcal Atomic # 8 Polarization: -108.78 SS G_CDS: -4.10 Total: -112.88 kcal Atomic # 14 Polarization: 41.06 SS G_CDS: 1.88 Total: 42.94 kcal Atomic # 16 Polarization: 110.48 SS G_CDS: -0.34 Total: 110.14 kcal Total: -85.97 -3.35 -89.32 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336881617.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.509 kcal (2) G-P(sol) polarization free energy of solvation -85.971 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.321 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.830 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds