Wall clock time and date at job start Fri Apr 10 2020 18:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46495 * 119.99960 * 84.99632 * 3 2 1 5 5 C 1.50703 * 109.46880 * 85.00580 * 4 3 2 6 6 H 1.08005 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99808 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47532 * 59.99633 * 9 7 5 11 11 H 1.48499 * 109.47001 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46855 * 299.99420 * 9 7 5 13 13 S 1.65602 * 119.99912 * 265.00474 * 3 2 1 14 14 O 1.42105 * 106.40141 * 203.53891 * 13 3 2 15 15 O 1.42100 * 106.40027 * 336.45243 * 13 3 2 16 16 N 1.65597 * 107.21970 * 89.99809 * 13 3 2 17 17 C 1.46929 * 120.62902 * 269.71449 * 16 13 3 18 18 C 1.52764 * 109.00873 * 233.58680 * 17 16 13 19 19 C 1.53046 * 109.38228 * 305.58892 * 18 17 16 20 20 C 1.53036 * 109.53500 * 61.24120 * 19 18 17 21 21 H 1.09006 * 109.52613 * 58.60347 * 20 19 18 22 22 C 1.50699 * 109.49776 * 178.67793 * 20 19 18 23 23 N 1.34782 * 120.00104 * 299.84604 * 22 20 19 24 24 O 1.21282 * 119.99901 * 119.83655 * 22 20 19 25 25 C 1.46924 * 120.63058 * 90.00148 * 16 13 3 26 26 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 29 29 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 30 30 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 31 31 H 1.09008 * 109.47219 * 205.00149 * 4 3 2 32 32 H 1.08997 * 109.47495 * 325.00411 * 4 3 2 33 33 H 0.96998 * 120.00198 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.58435 * 353.42494 * 17 16 13 35 35 H 1.08997 * 109.58080 * 113.84934 * 17 16 13 36 36 H 1.09002 * 109.55808 * 185.55791 * 18 17 16 37 37 H 1.08993 * 109.38553 * 65.51621 * 18 17 16 38 38 H 1.08997 * 109.45879 * 301.22420 * 19 18 17 39 39 H 1.08999 * 109.44263 * 181.25559 * 19 18 17 40 40 H 0.96998 * 119.99703 * 359.97438 * 23 22 20 41 41 H 0.97003 * 119.99519 * 179.97438 * 23 22 20 42 42 H 1.09000 * 109.58500 * 246.14945 * 25 16 13 43 43 H 1.08998 * 109.58944 * 6.57856 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4948 1.7889 1.8823 6 1 4.1721 1.1112 1.3838 7 6 3.8525 2.3607 3.0848 8 7 3.0275 3.1855 3.6919 9 14 5.5090 1.9637 3.8516 10 1 6.5944 2.3710 2.9238 11 1 5.6508 2.7012 5.1327 12 1 5.5986 0.5037 4.1079 13 16 2.4121 2.1202 -1.4287 14 8 3.3283 3.1571 -1.1050 15 8 2.7096 1.0800 -2.3499 16 7 1.0430 2.8642 -1.9894 17 6 0.1143 2.1519 -2.8776 18 6 -0.1146 2.9904 -4.1339 19 6 -0.5794 4.3919 -3.7314 20 6 0.5041 5.0679 -2.8881 21 1 1.4304 5.1216 -3.4602 22 6 0.0593 6.4597 -2.5195 23 7 -0.2061 7.3606 -3.4862 24 8 -0.0601 6.7692 -1.3529 25 6 0.7371 4.2511 -1.6132 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 2.0921 3.1803 1.0755 32 1 1.3617 1.8097 1.9453 33 1 3.2793 3.5880 4.5378 34 1 0.5413 1.1884 -3.1558 35 1 -0.8358 1.9988 -2.3658 36 1 -0.8768 2.5184 -4.7538 37 1 0.8171 3.0632 -4.6949 38 1 -1.4981 4.3167 -3.1497 39 1 -0.7644 4.9841 -4.6276 40 1 -0.1104 7.1132 -4.4192 41 1 -0.4928 8.2564 -3.2489 42 1 -0.1612 4.2727 -0.9962 43 1 1.5749 4.6723 -1.0575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336881618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:01 Heat of formation + Delta-G solvation = -123.419315 kcal Electronic energy + Delta-G solvation = -26892.569433 eV Core-core repulsion = 23099.056885 eV Total energy + Delta-G solvation = -3793.512548 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.08238 -37.72494 -36.69358 -35.98500 -35.14845 -33.96218 -32.62322 -32.26132 -31.25928 -29.93241 -26.55362 -24.72057 -24.26233 -23.08020 -21.65334 -21.39540 -20.00740 -18.39321 -17.71802 -17.32826 -16.67697 -16.63117 -16.20812 -15.68669 -15.20223 -14.88180 -14.45946 -14.35748 -14.17223 -13.77866 -13.62357 -13.34038 -13.18835 -12.85966 -12.80135 -12.08628 -11.98047 -11.76133 -11.65013 -11.55977 -11.50160 -11.34048 -11.17484 -10.95113 -10.88178 -10.86381 -10.58238 -10.41158 -10.33417 -9.94783 -9.90875 -9.82482 -9.71656 -8.87124 -8.37889 -8.01736 -5.99821 -4.04042 1.19338 2.55704 3.29137 3.37595 3.41339 3.45554 3.54903 4.08325 4.47869 4.49712 4.58759 4.64891 4.86655 5.02846 5.10178 5.23916 5.28455 5.34521 5.36360 5.45195 5.66121 5.68534 5.72338 5.75875 5.77414 5.85731 5.99024 6.04838 6.16566 6.27164 6.34362 6.61668 6.62668 6.63835 6.79420 7.15586 7.31724 7.47673 7.68417 7.97040 8.15610 8.26993 8.97721 9.60749 11.08642 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.004946 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.218260 B = 5659.237919 C = 6729.094085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.117 3.883 3 N -0.990 5.990 4 C 0.258 3.742 5 C -0.529 4.529 6 H 0.059 0.941 7 C 0.063 3.937 8 N -0.894 5.894 9 Si 0.896 3.104 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.277 1.277 13 S 2.778 3.222 14 O -0.961 6.961 15 O -0.997 6.997 16 N -1.011 6.011 17 C 0.116 3.884 18 C -0.130 4.130 19 C -0.106 4.106 20 C -0.123 4.123 21 H 0.103 0.897 22 C 0.524 3.476 23 N -0.858 5.858 24 O -0.531 6.531 25 C 0.140 3.860 26 H 0.048 0.952 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.084 0.916 30 H 0.074 0.926 31 H 0.037 0.963 32 H 0.035 0.965 33 H 0.264 0.736 34 H 0.092 0.908 35 H 0.066 0.934 36 H 0.077 0.923 37 H 0.070 0.930 38 H 0.071 0.929 39 H 0.067 0.933 40 H 0.400 0.600 41 H 0.400 0.600 42 H 0.077 0.923 43 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.160 1.445 -17.553 20.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.009 4.009 3 N -0.831 5.831 4 C 0.136 3.864 5 C -0.569 4.569 6 H 0.077 0.923 7 C -0.139 4.139 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.202 1.202 13 S 2.787 3.213 14 O -0.944 6.944 15 O -0.981 6.981 16 N -0.849 5.849 17 C -0.010 4.010 18 C -0.169 4.169 19 C -0.144 4.144 20 C -0.146 4.146 21 H 0.121 0.879 22 C 0.308 3.692 23 N -0.422 5.422 24 O -0.406 6.406 25 C 0.014 3.986 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.093 0.907 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.073 0.927 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.096 0.904 37 H 0.088 0.912 38 H 0.090 0.910 39 H 0.085 0.915 40 H 0.228 0.772 41 H 0.231 0.769 42 H 0.095 0.905 43 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -10.330 1.561 -16.957 19.917 hybrid contribution 0.412 0.226 0.296 0.555 sum -9.919 1.787 -16.661 19.472 Atomic orbital electron populations 1.22279 0.97282 1.01337 1.02155 1.21136 0.93073 0.83300 1.03424 1.57764 1.80825 1.21314 1.23203 1.19026 0.97298 0.91138 0.78894 1.21440 1.02106 1.27765 1.05555 0.92316 1.24920 0.97281 0.94844 0.96889 1.69911 1.36082 1.30106 1.17208 0.86599 0.84330 0.78353 0.78400 1.20042 1.21195 1.20216 1.02076 0.73248 0.73105 0.72826 1.93623 1.59162 1.57592 1.84067 1.93500 1.83276 1.57774 1.63513 1.58487 1.42971 1.21777 1.61662 1.21317 0.94029 0.95577 0.90052 1.21798 1.02099 0.95260 0.97738 1.21470 0.97618 0.96365 0.98916 1.21691 1.01059 0.91785 1.00066 0.87877 1.20550 0.76116 0.87035 0.85531 1.43878 1.72570 1.15965 1.09809 1.90810 1.51118 1.80012 1.18705 1.21129 1.03961 0.79450 0.94078 0.93312 0.92299 0.91919 0.89759 0.90735 0.94500 0.94705 0.92650 0.88970 0.91545 0.90410 0.91171 0.91003 0.91454 0.77222 0.76923 0.90462 0.87862 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.42 10.24 37.16 0.38 -2.04 16 2 C 0.12 2.05 6.40 -4.04 -0.03 2.02 16 3 N -0.99 -20.79 2.82 -115.66 -0.33 -21.12 16 4 C 0.26 6.59 5.10 -5.19 -0.03 6.56 16 5 C -0.53 -15.10 9.38 -34.44 -0.32 -15.42 16 6 H 0.06 1.67 7.81 -52.48 -0.41 1.26 16 7 C 0.06 1.82 5.46 -17.82 -0.10 1.72 16 8 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 9 Si 0.90 22.24 29.54 -169.99 -5.02 17.22 16 10 H -0.27 -6.86 7.11 56.52 0.40 -6.46 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 S 2.78 55.94 6.10 -107.50 -0.66 55.29 16 14 O -0.96 -23.33 15.70 -57.17 -0.90 -24.23 16 15 O -1.00 -20.39 15.27 -57.17 -0.87 -21.26 16 16 N -1.01 -15.53 3.35 -113.77 -0.38 -15.91 16 17 C 0.12 1.34 5.52 -3.93 -0.02 1.32 16 18 C -0.13 -1.13 6.07 -26.83 -0.16 -1.29 16 19 C -0.11 -0.88 5.08 -26.69 -0.14 -1.01 16 20 C -0.12 -1.41 2.68 -91.65 -0.25 -1.66 16 21 H 0.10 1.11 8.14 -51.93 -0.42 0.69 16 22 C 0.52 6.42 7.43 -10.98 -0.08 6.33 16 23 N -0.86 -6.38 8.76 31.22 0.27 -6.11 16 24 O -0.53 -9.17 16.76 5.56 0.09 -9.07 16 25 C 0.14 2.16 5.11 -3.71 -0.02 2.15 16 26 H 0.05 0.62 6.47 -51.93 -0.34 0.28 16 27 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.96 8.14 -51.93 -0.42 0.53 16 29 H 0.08 1.53 8.11 -51.93 -0.42 1.10 16 30 H 0.07 1.23 6.91 -51.93 -0.36 0.87 16 31 H 0.04 1.01 7.61 -51.92 -0.40 0.62 16 32 H 0.03 0.90 8.11 -51.93 -0.42 0.48 16 33 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 34 H 0.09 1.10 6.91 -51.93 -0.36 0.74 16 35 H 0.07 0.67 7.50 -51.93 -0.39 0.28 16 36 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.07 0.62 8.14 -51.93 -0.42 0.19 16 39 H 0.07 0.38 7.54 -51.93 -0.39 -0.01 16 40 H 0.40 1.70 8.24 -40.82 -0.34 1.36 16 41 H 0.40 2.62 8.93 -40.82 -0.36 2.25 16 42 H 0.08 1.19 7.96 -51.93 -0.41 0.78 16 43 H 0.10 1.92 6.92 -51.93 -0.36 1.56 16 LS Contribution 357.53 15.07 5.39 5.39 Total: -1.00 -36.64 357.53 -9.05 -45.69 By element: Atomic # 1 Polarization: 8.01 SS G_CDS: -6.63 Total: 1.39 kcal Atomic # 6 Polarization: -0.56 SS G_CDS: -0.76 Total: -1.32 kcal Atomic # 7 Polarization: -69.38 SS G_CDS: 0.30 Total: -69.08 kcal Atomic # 8 Polarization: -52.88 SS G_CDS: -1.68 Total: -54.56 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Atomic # 16 Polarization: 55.94 SS G_CDS: -0.66 Total: 55.29 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -36.64 -9.05 -45.69 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336881618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.734 kcal (2) G-P(sol) polarization free energy of solvation -36.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -114.370 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.049 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.686 kcal (6) G-S(sol) free energy of system = (1) + (5) -123.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds