Wall clock time and date at job start Fri Apr 10 2020 18:18:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46500 * 109.46998 * 2 1 4 4 C 1.46495 * 119.99960 * 84.99632 * 3 2 1 5 5 C 1.50703 * 109.46880 * 85.00580 * 4 3 2 6 6 H 1.08005 * 119.99927 * 359.97438 * 5 4 3 7 7 C 1.37876 * 119.99999 * 180.02562 * 5 4 3 8 8 N 1.31509 * 120.00151 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99808 * 179.97438 * 7 5 4 10 10 H 1.48496 * 109.47532 * 59.99633 * 9 7 5 11 11 H 1.48499 * 109.47001 * 179.97438 * 9 7 5 12 12 H 1.48503 * 109.46855 * 299.99420 * 9 7 5 13 13 S 1.65602 * 119.99912 * 265.00474 * 3 2 1 14 14 O 1.42105 * 106.40141 * 203.53891 * 13 3 2 15 15 O 1.42100 * 106.40027 * 336.45243 * 13 3 2 16 16 N 1.65597 * 107.21970 * 89.99809 * 13 3 2 17 17 C 1.46929 * 120.62902 * 269.71449 * 16 13 3 18 18 C 1.52764 * 109.00873 * 233.58680 * 17 16 13 19 19 C 1.53046 * 109.38228 * 305.58892 * 18 17 16 20 20 C 1.53036 * 109.53500 * 61.24120 * 19 18 17 21 21 H 1.09006 * 109.52613 * 58.60347 * 20 19 18 22 22 C 1.50699 * 109.49776 * 178.67793 * 20 19 18 23 23 N 1.34782 * 120.00104 * 299.84604 * 22 20 19 24 24 O 1.21282 * 119.99901 * 119.83655 * 22 20 19 25 25 C 1.46924 * 120.63058 * 90.00148 * 16 13 3 26 26 H 1.09001 * 109.46801 * 60.00058 * 1 2 3 27 27 H 1.09001 * 109.46998 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47050 * 299.99945 * 1 2 3 29 29 H 1.08993 * 109.46955 * 120.00226 * 2 1 3 30 30 H 1.09000 * 109.47050 * 240.00054 * 2 1 3 31 31 H 1.09008 * 109.47219 * 205.00149 * 4 3 2 32 32 H 1.08997 * 109.47495 * 325.00411 * 4 3 2 33 33 H 0.96998 * 120.00198 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.58435 * 353.42494 * 17 16 13 35 35 H 1.08997 * 109.58080 * 113.84934 * 17 16 13 36 36 H 1.09002 * 109.55808 * 185.55791 * 18 17 16 37 37 H 1.08993 * 109.38553 * 65.51621 * 18 17 16 38 38 H 1.08997 * 109.45879 * 301.22420 * 19 18 17 39 39 H 1.08999 * 109.44263 * 181.25559 * 19 18 17 40 40 H 0.96998 * 119.99703 * 359.97438 * 23 22 20 41 41 H 0.97003 * 119.99519 * 179.97438 * 23 22 20 42 42 H 1.09000 * 109.58500 * 246.14945 * 25 16 13 43 43 H 1.08998 * 109.58944 * 6.57856 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1582 2.1087 1.2639 5 6 3.4948 1.7889 1.8823 6 1 4.1721 1.1112 1.3838 7 6 3.8525 2.3607 3.0848 8 7 3.0275 3.1855 3.6919 9 14 5.5090 1.9637 3.8516 10 1 6.5944 2.3710 2.9238 11 1 5.6508 2.7012 5.1327 12 1 5.5986 0.5037 4.1079 13 16 2.4121 2.1202 -1.4287 14 8 3.3283 3.1571 -1.1050 15 8 2.7096 1.0800 -2.3499 16 7 1.0430 2.8642 -1.9894 17 6 0.1143 2.1519 -2.8776 18 6 -0.1146 2.9904 -4.1339 19 6 -0.5794 4.3919 -3.7314 20 6 0.5041 5.0679 -2.8881 21 1 1.4304 5.1216 -3.4602 22 6 0.0593 6.4597 -2.5195 23 7 -0.2061 7.3606 -3.4862 24 8 -0.0601 6.7692 -1.3529 25 6 0.7371 4.2511 -1.6132 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.8934 -0.5138 -0.8900 31 1 2.0921 3.1803 1.0755 32 1 1.3617 1.8097 1.9453 33 1 3.2793 3.5880 4.5378 34 1 0.5413 1.1884 -3.1558 35 1 -0.8358 1.9988 -2.3658 36 1 -0.8768 2.5184 -4.7538 37 1 0.8171 3.0632 -4.6949 38 1 -1.4981 4.3167 -3.1497 39 1 -0.7644 4.9841 -4.6276 40 1 -0.1104 7.1132 -4.4192 41 1 -0.4928 8.2564 -3.2489 42 1 -0.1612 4.2727 -0.9962 43 1 1.5749 4.6723 -1.0575 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336881618.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:01 Heat of formation + Delta-G solvation = -154.045887 kcal Electronic energy + Delta-G solvation = -26893.897501 eV Core-core repulsion = 23099.056885 eV Total energy + Delta-G solvation = -3794.840616 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.06675 -38.75986 -38.37996 -37.67781 -36.87855 -34.89764 -34.72849 -33.22542 -32.22915 -31.51662 -28.51808 -25.64139 -25.36981 -24.94811 -23.24114 -22.29867 -20.96730 -19.75981 -19.12790 -18.53291 -18.33634 -18.08551 -17.64902 -17.25882 -16.53017 -16.18539 -15.86331 -15.36926 -15.30149 -15.21803 -14.84864 -14.67202 -14.53285 -14.27906 -13.90347 -13.80954 -13.54187 -13.38622 -13.18648 -13.07431 -12.97507 -12.78890 -12.70389 -12.53530 -12.23141 -12.16008 -12.00358 -11.90212 -11.78711 -11.62377 -11.47517 -10.91261 -10.65618 -10.61073 -10.05704 -9.78271 -8.20837 -6.33749 -0.38578 1.36823 1.41247 1.48293 1.60808 1.95805 2.37065 2.46747 2.66626 3.09566 3.35421 3.52593 3.78576 3.87730 3.95955 4.04671 4.21095 4.29438 4.37655 4.46217 4.48139 4.55262 4.69856 4.78431 4.83361 4.93104 5.01496 5.04256 5.08907 5.13816 5.16738 5.20478 5.39814 5.42020 5.47953 5.64048 5.70785 5.91197 5.98578 6.09808 6.45242 6.74507 7.35113 7.35691 8.86647 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.014443 B = 0.004946 C = 0.004160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1938.218260 B = 5659.237919 C = 6729.094085 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.108 3.892 3 N -0.998 5.998 4 C 0.278 3.722 5 C -0.550 4.550 6 H 0.052 0.948 7 C 0.011 3.989 8 N -0.925 5.925 9 Si 0.958 3.042 10 H -0.277 1.277 11 H -0.276 1.276 12 H -0.261 1.261 13 S 2.788 3.212 14 O -1.011 7.011 15 O -1.000 7.000 16 N -1.000 6.000 17 C 0.101 3.899 18 C -0.125 4.125 19 C -0.099 4.099 20 C -0.118 4.118 21 H 0.112 0.888 22 C 0.522 3.478 23 N -0.830 5.830 24 O -0.593 6.593 25 C 0.139 3.861 26 H 0.064 0.936 27 H 0.090 0.910 28 H 0.046 0.954 29 H 0.072 0.928 30 H 0.087 0.913 31 H 0.008 0.992 32 H 0.025 0.975 33 H 0.267 0.733 34 H 0.092 0.908 35 H 0.086 0.914 36 H 0.115 0.885 37 H 0.069 0.931 38 H 0.073 0.927 39 H 0.107 0.893 40 H 0.419 0.581 41 H 0.408 0.592 42 H 0.072 0.928 43 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.495 0.724 -20.127 23.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.017 4.017 3 N -0.839 5.839 4 C 0.154 3.846 5 C -0.589 4.589 6 H 0.070 0.930 7 C -0.188 4.188 8 N -0.565 5.565 9 Si 0.782 3.218 10 H -0.203 1.203 11 H -0.201 1.201 12 H -0.185 1.185 13 S 2.799 3.201 14 O -0.995 6.995 15 O -0.984 6.984 16 N -0.841 5.841 17 C -0.023 4.023 18 C -0.164 4.164 19 C -0.137 4.137 20 C -0.142 4.142 21 H 0.130 0.870 22 C 0.307 3.693 23 N -0.394 5.394 24 O -0.473 6.473 25 C 0.013 3.987 26 H 0.083 0.917 27 H 0.109 0.891 28 H 0.065 0.935 29 H 0.090 0.910 30 H 0.106 0.894 31 H 0.026 0.974 32 H 0.043 0.957 33 H 0.076 0.924 34 H 0.110 0.890 35 H 0.104 0.896 36 H 0.133 0.867 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.125 0.875 40 H 0.251 0.749 41 H 0.240 0.760 42 H 0.090 0.910 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.678 0.812 -19.606 22.835 hybrid contribution 0.768 0.455 0.988 1.331 sum -10.910 1.267 -18.618 21.616 Atomic orbital electron populations 1.22206 0.94390 1.03419 1.02161 1.21397 0.95561 0.81343 1.03441 1.57691 1.81538 1.22742 1.21895 1.18487 0.95781 0.89915 0.80432 1.21796 1.03269 1.27770 1.06064 0.92957 1.25785 1.00998 0.94630 0.97430 1.70022 1.37901 1.30914 1.17641 0.85623 0.79508 0.79054 0.77627 1.20294 1.20090 1.18540 1.01482 0.73712 0.72421 0.72516 1.93554 1.62033 1.59157 1.84762 1.93482 1.83880 1.57869 1.63159 1.58063 1.42523 1.21698 1.61798 1.21783 0.93674 0.95866 0.90983 1.21838 1.03357 0.94961 0.96281 1.21533 0.96001 0.96446 0.99736 1.21664 1.02998 0.91153 0.98350 0.87002 1.20689 0.75610 0.87790 0.85230 1.43619 1.70295 1.15450 1.10069 1.90794 1.54163 1.81017 1.21302 1.21041 1.01747 0.79781 0.96178 0.91692 0.89116 0.93518 0.90990 0.89442 0.97433 0.95694 0.92393 0.88990 0.89621 0.86723 0.91236 0.90788 0.87458 0.74851 0.75986 0.91004 0.92238 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.39 10.24 71.98 0.74 -3.65 16 2 C 0.11 3.77 6.40 86.38 0.55 4.33 16 3 N -1.00 -43.40 2.82 -519.84 -1.47 -44.86 16 4 C 0.28 14.94 5.10 85.64 0.44 15.37 16 5 C -0.55 -32.57 9.38 25.60 0.24 -32.33 16 6 H 0.05 3.08 7.81 -2.91 -0.02 3.06 16 7 C 0.01 0.65 5.46 84.66 0.46 1.11 16 8 N -0.93 -56.93 13.29 21.45 0.28 -56.64 16 9 Si 0.96 46.30 29.54 68.60 2.03 48.33 16 10 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 11 H -0.28 -12.79 7.11 99.48 0.71 -12.08 16 12 H -0.26 -11.87 7.11 99.48 0.71 -11.17 16 13 S 2.79 115.45 6.10 -56.49 -0.34 115.10 16 14 O -1.01 -51.96 15.70 -128.00 -2.01 -53.97 16 15 O -1.00 -40.66 15.27 -128.00 -1.95 -42.62 16 16 N -1.00 -30.70 3.35 -513.85 -1.72 -32.42 16 17 C 0.10 2.09 5.52 86.22 0.48 2.56 16 18 C -0.13 -1.68 6.07 30.53 0.19 -1.49 16 19 C -0.10 -1.28 5.08 30.62 0.16 -1.12 16 20 C -0.12 -2.59 2.68 -11.46 -0.03 -2.62 16 21 H 0.11 2.25 8.14 -2.38 -0.02 2.23 16 22 C 0.52 12.43 7.43 87.66 0.65 13.08 16 23 N -0.83 -10.36 8.76 -173.53 -1.52 -11.89 16 24 O -0.59 -21.21 16.76 -3.04 -0.05 -21.26 16 25 C 0.14 4.46 5.11 86.36 0.44 4.90 16 26 H 0.06 1.51 6.47 -2.39 -0.02 1.50 16 27 H 0.09 1.87 8.14 -2.39 -0.02 1.85 16 28 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.07 2.66 8.11 -2.39 -0.02 2.64 16 30 H 0.09 2.81 6.91 -2.39 -0.02 2.79 16 31 H 0.01 0.45 7.61 -2.38 -0.02 0.44 16 32 H 0.03 1.37 8.11 -2.39 -0.02 1.35 16 33 H 0.27 15.47 8.31 -92.71 -0.77 14.70 16 34 H 0.09 1.94 6.91 -2.39 -0.02 1.93 16 35 H 0.09 1.47 7.50 -2.39 -0.02 1.45 16 36 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 38 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.11 0.59 7.54 -2.39 -0.02 0.58 16 40 H 0.42 1.97 8.24 -92.71 -0.76 1.20 16 41 H 0.41 4.48 8.93 -92.71 -0.83 3.65 16 42 H 0.07 2.34 7.96 -2.39 -0.02 2.32 16 43 H 0.06 2.43 6.92 -2.39 -0.02 2.41 16 Total: -1.00 -84.83 357.53 -3.01 -87.84 By element: Atomic # 1 Polarization: 12.80 SS G_CDS: -0.56 Total: 12.24 kcal Atomic # 6 Polarization: -4.16 SS G_CDS: 4.31 Total: 0.15 kcal Atomic # 7 Polarization: -141.39 SS G_CDS: -4.43 Total: -145.82 kcal Atomic # 8 Polarization: -113.83 SS G_CDS: -4.02 Total: -117.84 kcal Atomic # 14 Polarization: 46.30 SS G_CDS: 2.03 Total: 48.33 kcal Atomic # 16 Polarization: 115.45 SS G_CDS: -0.34 Total: 115.10 kcal Total: -84.83 -3.01 -87.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336881618.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.202 kcal (2) G-P(sol) polarization free energy of solvation -84.832 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.034 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -154.046 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds