Wall clock time and date at job start Fri Apr 10 2020 18:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46933 * 2 1 4 4 C 1.46499 * 119.99719 * 274.99263 * 3 2 1 5 5 C 1.50703 * 109.47398 * 275.00350 * 4 3 2 6 6 H 1.08001 * 119.99972 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00001 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47283 * 90.00364 * 9 7 5 11 11 H 1.48500 * 109.46956 * 210.00206 * 9 7 5 12 12 H 1.48493 * 109.47337 * 330.00049 * 9 7 5 13 13 S 1.65596 * 120.00260 * 95.00174 * 3 2 1 14 14 O 1.42097 * 106.40511 * 156.45537 * 13 3 2 15 15 O 1.42098 * 106.40513 * 23.53398 * 13 3 2 16 16 N 1.65604 * 107.21646 * 269.99474 * 13 3 2 17 17 C 1.46494 * 120.00332 * 270.00194 * 16 13 3 18 18 C 1.46505 * 119.99883 * 89.99590 * 16 13 3 19 19 C 1.50706 * 109.46585 * 95.00259 * 18 16 13 20 20 O 1.21275 * 120.00404 * 0.02562 * 19 18 16 21 21 N 1.34779 * 119.99413 * 180.02562 * 19 18 16 22 22 C 1.46506 * 119.99461 * 180.02562 * 21 19 18 23 23 C 1.53001 * 117.49681 * 223.62047 * 22 21 19 24 24 C 1.52999 * 59.99986 * 252.51359 * 23 22 21 25 25 H 1.09001 * 109.47223 * 60.00185 * 1 2 3 26 26 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47361 * 300.00589 * 1 2 3 28 28 H 1.08997 * 109.47361 * 239.99411 * 2 1 3 29 29 H 1.09008 * 109.46672 * 119.99484 * 2 1 3 30 30 H 1.09005 * 109.47031 * 35.00731 * 4 3 2 31 31 H 1.09002 * 109.47249 * 155.00322 * 4 3 2 32 32 H 0.97006 * 120.00170 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47191 * 269.99849 * 17 16 13 34 34 H 1.09011 * 109.46977 * 29.99574 * 17 16 13 35 35 H 1.08996 * 109.47316 * 149.99752 * 17 16 13 36 36 H 1.08994 * 109.47435 * 335.00711 * 18 16 13 37 37 H 1.08994 * 109.47204 * 215.00314 * 18 16 13 38 38 H 0.96995 * 120.00725 * 0.02562 * 21 19 18 39 39 H 1.08998 * 115.55053 * 9.32545 * 22 21 19 40 40 H 1.09004 * 117.49834 * 359.97438 * 23 22 21 41 41 H 1.08997 * 117.49999 * 145.01929 * 23 22 21 42 42 H 1.08998 * 117.49443 * 252.51298 * 24 23 22 43 43 H 1.08998 * 117.52032 * 107.48340 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1721 1.1110 -1.3839 7 6 3.8526 2.3604 -3.0849 8 7 3.0277 3.1852 -3.6921 9 14 5.5090 1.9632 -3.8516 10 1 5.3731 0.7799 -4.7385 11 1 5.9780 3.1264 -4.6468 12 1 6.4928 1.6678 -2.7793 13 16 2.4121 2.1203 1.4286 14 8 3.3283 3.1570 1.1049 15 8 2.7094 1.0801 2.3499 16 7 1.0430 2.8644 1.9893 17 6 0.7516 4.2477 1.6053 18 6 0.1232 2.1391 2.8693 19 6 0.4496 2.4544 4.3064 20 8 1.3604 3.2107 4.5696 21 7 -0.2708 1.8957 5.2991 22 6 0.0462 2.2026 6.6962 23 6 0.0640 1.0384 7.6887 24 6 -1.0777 2.0563 7.7240 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.3617 1.8096 -1.9454 31 1 2.0922 3.1802 -1.0757 32 1 3.2793 3.5871 -4.5383 33 1 1.1984 4.9279 2.3305 34 1 1.1672 4.4458 0.6172 35 1 -0.3276 4.3988 1.5826 36 1 0.2273 1.0675 2.6998 37 1 -0.9011 2.4432 2.6542 38 1 -0.9990 1.2906 5.0887 39 1 0.7668 3.0060 6.8492 40 1 -0.1604 0.0441 7.3023 41 1 0.7966 1.0755 8.4949 42 1 -1.0962 2.7631 8.5536 43 1 -2.0529 1.7321 7.3608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336912160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:09 Heat of formation + Delta-G solvation = -76.540352 kcal Electronic energy + Delta-G solvation = -26243.780055 eV Core-core repulsion = 22452.300331 eV Total energy + Delta-G solvation = -3791.479724 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.92662 -37.43808 -36.64641 -36.07641 -35.46783 -35.09045 -33.03545 -32.66832 -30.05374 -28.64602 -26.61823 -25.10225 -23.15032 -22.71369 -22.27613 -21.69033 -20.86184 -18.42540 -17.61295 -17.43581 -16.76399 -16.60809 -16.28689 -15.81798 -15.16712 -14.90991 -14.63099 -14.32084 -14.18655 -13.69586 -13.51318 -13.07067 -13.04704 -12.79855 -12.67909 -12.17116 -12.09995 -11.94857 -11.87876 -11.69985 -11.53210 -11.33102 -11.26419 -11.13126 -11.00799 -10.88767 -10.83189 -10.47795 -10.46795 -10.21266 -9.96536 -9.75673 -8.97763 -8.86574 -8.42913 -8.08443 -6.05692 -4.09237 1.15659 2.49199 2.84900 3.32611 3.39282 3.44176 3.47128 3.62236 4.12418 4.46119 4.46620 4.59332 4.63413 4.68207 4.81191 4.90040 5.07052 5.27949 5.29061 5.38419 5.40325 5.49939 5.62497 5.65045 5.67163 5.73791 5.78346 5.93596 6.05174 6.11703 6.24299 6.28780 6.51995 6.53821 6.69812 7.22937 7.29971 7.41343 7.62240 7.92204 8.12016 8.21491 8.93068 9.55998 11.02943 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.003464 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.043992 B = 8080.653937 C = 8247.364927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.114 3.886 3 N -0.991 5.991 4 C 0.258 3.742 5 C -0.528 4.528 6 H 0.060 0.940 7 C 0.062 3.938 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.280 1.280 11 H -0.285 1.285 12 H -0.272 1.272 13 S 2.780 3.220 14 O -0.955 6.955 15 O -0.993 6.993 16 N -0.997 5.997 17 C 0.097 3.903 18 C 0.110 3.890 19 C 0.500 3.500 20 O -0.521 6.521 21 N -0.707 5.707 22 C 0.082 3.918 23 C -0.194 4.194 24 C -0.191 4.191 25 H 0.064 0.936 26 H 0.060 0.940 27 H 0.045 0.955 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.036 0.964 31 H 0.036 0.964 32 H 0.263 0.737 33 H 0.058 0.942 34 H 0.080 0.920 35 H 0.065 0.935 36 H 0.110 0.890 37 H 0.108 0.892 38 H 0.401 0.599 39 H 0.137 0.863 40 H 0.098 0.902 41 H 0.101 0.899 42 H 0.102 0.898 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.170 -4.371 16.375 22.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.012 4.012 3 N -0.833 5.833 4 C 0.136 3.864 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.140 4.140 8 N -0.535 5.535 9 Si 0.724 3.276 10 H -0.206 1.206 11 H -0.210 1.210 12 H -0.197 1.197 13 S 2.789 3.211 14 O -0.938 6.938 15 O -0.977 6.977 16 N -0.833 5.833 17 C -0.048 4.048 18 C -0.020 4.020 19 C 0.285 3.715 20 O -0.395 6.395 21 N -0.359 5.359 22 C -0.025 4.025 23 C -0.233 4.233 24 C -0.229 4.229 25 H 0.083 0.917 26 H 0.079 0.921 27 H 0.064 0.936 28 H 0.105 0.895 29 H 0.093 0.907 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.073 0.927 33 H 0.076 0.924 34 H 0.099 0.901 35 H 0.084 0.916 36 H 0.128 0.872 37 H 0.126 0.874 38 H 0.235 0.765 39 H 0.155 0.845 40 H 0.116 0.884 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.642 -3.634 16.756 21.302 hybrid contribution 0.021 -0.485 -0.707 0.857 sum -12.621 -4.119 16.049 20.828 Atomic orbital electron populations 1.22301 0.97308 1.01455 1.02012 1.21171 0.93026 0.83389 1.03650 1.57868 1.80916 1.21272 1.23267 1.19048 0.97408 0.91057 0.78904 1.21494 1.02104 1.27675 1.05495 0.92193 1.24917 0.97372 0.94796 0.96881 1.69912 1.36162 1.30280 1.17174 0.86521 0.84077 0.77829 0.79208 1.20629 1.21042 1.19671 1.02157 0.73167 0.73162 0.72638 1.93622 1.58655 1.57552 1.83997 1.93508 1.83008 1.57871 1.63304 1.57957 1.42957 1.22884 1.59487 1.21487 1.01338 0.80879 1.01129 1.21049 0.95980 0.98554 0.86459 1.21501 0.81887 0.80053 0.88056 1.90704 1.29288 1.35180 1.84287 1.45393 1.36407 1.49377 1.04712 1.21584 1.01408 1.00785 0.78678 1.23427 1.01691 0.95547 1.02646 1.23374 0.94508 1.03183 1.01854 0.91728 0.92106 0.93618 0.89549 0.90662 0.94625 0.94568 0.92701 0.92353 0.90149 0.91601 0.87243 0.87427 0.76463 0.84518 0.88379 0.88020 0.87986 0.88491 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.19 10.24 37.16 0.38 -1.81 16 2 C 0.11 1.92 6.40 -4.04 -0.03 1.89 16 3 N -0.99 -20.51 2.82 -115.66 -0.33 -20.84 16 4 C 0.26 6.37 5.10 -5.19 -0.03 6.35 16 5 C -0.53 -14.86 9.38 -34.44 -0.32 -15.18 16 6 H 0.06 1.70 7.81 -52.49 -0.41 1.29 16 7 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 8 N -0.90 -26.00 13.29 55.43 0.74 -25.27 16 9 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 10 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 13 S 2.78 58.83 5.97 -107.50 -0.64 58.18 16 14 O -0.95 -24.46 16.18 -57.18 -0.93 -25.38 16 15 O -0.99 -21.74 15.66 -57.18 -0.90 -22.64 16 16 N -1.00 -16.20 2.73 -123.05 -0.34 -16.53 16 17 C 0.10 1.44 10.32 59.84 0.62 2.05 16 18 C 0.11 1.33 5.17 -5.19 -0.03 1.30 16 19 C 0.50 6.87 7.89 -10.98 -0.09 6.78 16 20 O -0.52 -9.57 15.99 5.56 0.09 -9.48 16 21 N -0.71 -6.89 5.57 -53.80 -0.30 -7.19 16 22 C 0.08 0.78 6.43 -67.93 -0.44 0.34 16 23 C -0.19 -1.45 10.46 -26.73 -0.28 -1.73 16 24 C -0.19 -1.24 10.45 -26.73 -0.28 -1.52 16 25 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 26 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 27 H 0.04 0.50 6.08 -51.93 -0.32 0.18 16 28 H 0.09 1.50 8.11 -51.93 -0.42 1.08 16 29 H 0.08 1.20 6.92 -51.92 -0.36 0.84 16 30 H 0.04 0.88 8.11 -51.93 -0.42 0.46 16 31 H 0.04 0.95 7.26 -51.93 -0.38 0.57 16 32 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 33 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 34 H 0.08 1.31 7.44 -51.92 -0.39 0.92 16 35 H 0.07 0.72 7.94 -51.93 -0.41 0.31 16 36 H 0.11 1.18 6.36 -51.93 -0.33 0.85 16 37 H 0.11 0.84 7.96 -51.93 -0.41 0.42 16 38 H 0.40 2.47 8.83 -40.82 -0.36 2.11 16 39 H 0.14 1.55 7.40 -51.93 -0.38 1.17 16 40 H 0.10 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.10 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 LS Contribution 371.89 15.07 5.60 5.60 Total: -1.00 -37.16 371.89 -9.29 -46.45 By element: Atomic # 1 Polarization: 6.67 SS G_CDS: -6.69 Total: -0.01 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -0.58 Total: 0.15 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -0.23 Total: -69.82 kcal Atomic # 8 Polarization: -55.77 SS G_CDS: -1.73 Total: -57.50 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Atomic # 16 Polarization: 58.83 SS G_CDS: -0.64 Total: 58.18 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -37.16 -9.29 -46.45 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336912160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.094 kcal (2) G-P(sol) polarization free energy of solvation -37.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.286 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds