Wall clock time and date at job start Fri Apr 10 2020 18:18:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46501 * 109.46933 * 2 1 4 4 C 1.46499 * 119.99719 * 274.99263 * 3 2 1 5 5 C 1.50703 * 109.47398 * 275.00350 * 4 3 2 6 6 H 1.08001 * 119.99972 * 0.02562 * 5 4 3 7 7 C 1.37875 * 120.00001 * 179.97438 * 5 4 3 8 8 N 1.31511 * 120.00070 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99866 * 180.02562 * 7 5 4 10 10 H 1.48501 * 109.47283 * 90.00364 * 9 7 5 11 11 H 1.48500 * 109.46956 * 210.00206 * 9 7 5 12 12 H 1.48493 * 109.47337 * 330.00049 * 9 7 5 13 13 S 1.65596 * 120.00260 * 95.00174 * 3 2 1 14 14 O 1.42097 * 106.40511 * 156.45537 * 13 3 2 15 15 O 1.42098 * 106.40513 * 23.53398 * 13 3 2 16 16 N 1.65604 * 107.21646 * 269.99474 * 13 3 2 17 17 C 1.46494 * 120.00332 * 270.00194 * 16 13 3 18 18 C 1.46505 * 119.99883 * 89.99590 * 16 13 3 19 19 C 1.50706 * 109.46585 * 95.00259 * 18 16 13 20 20 O 1.21275 * 120.00404 * 0.02562 * 19 18 16 21 21 N 1.34779 * 119.99413 * 180.02562 * 19 18 16 22 22 C 1.46506 * 119.99461 * 180.02562 * 21 19 18 23 23 C 1.53001 * 117.49681 * 223.62047 * 22 21 19 24 24 C 1.52999 * 59.99986 * 252.51359 * 23 22 21 25 25 H 1.09001 * 109.47223 * 60.00185 * 1 2 3 26 26 H 1.08999 * 109.47282 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47361 * 300.00589 * 1 2 3 28 28 H 1.08997 * 109.47361 * 239.99411 * 2 1 3 29 29 H 1.09008 * 109.46672 * 119.99484 * 2 1 3 30 30 H 1.09005 * 109.47031 * 35.00731 * 4 3 2 31 31 H 1.09002 * 109.47249 * 155.00322 * 4 3 2 32 32 H 0.97006 * 120.00170 * 180.02562 * 8 7 5 33 33 H 1.09004 * 109.47191 * 269.99849 * 17 16 13 34 34 H 1.09011 * 109.46977 * 29.99574 * 17 16 13 35 35 H 1.08996 * 109.47316 * 149.99752 * 17 16 13 36 36 H 1.08994 * 109.47435 * 335.00711 * 18 16 13 37 37 H 1.08994 * 109.47204 * 215.00314 * 18 16 13 38 38 H 0.96995 * 120.00725 * 0.02562 * 21 19 18 39 39 H 1.08998 * 115.55053 * 9.32545 * 22 21 19 40 40 H 1.09004 * 117.49834 * 359.97438 * 23 22 21 41 41 H 1.08997 * 117.49999 * 145.01929 * 23 22 21 42 42 H 1.08998 * 117.49443 * 252.51298 * 24 23 22 43 43 H 1.08998 * 117.52032 * 107.48340 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4948 1.7887 -1.8823 6 1 4.1721 1.1110 -1.3839 7 6 3.8526 2.3604 -3.0849 8 7 3.0277 3.1852 -3.6921 9 14 5.5090 1.9632 -3.8516 10 1 5.3731 0.7799 -4.7385 11 1 5.9780 3.1264 -4.6468 12 1 6.4928 1.6678 -2.7793 13 16 2.4121 2.1203 1.4286 14 8 3.3283 3.1570 1.1049 15 8 2.7094 1.0801 2.3499 16 7 1.0430 2.8644 1.9893 17 6 0.7516 4.2477 1.6053 18 6 0.1232 2.1391 2.8693 19 6 0.4496 2.4544 4.3064 20 8 1.3604 3.2107 4.5696 21 7 -0.2708 1.8957 5.2991 22 6 0.0462 2.2026 6.6962 23 6 0.0640 1.0384 7.6887 24 6 -1.0777 2.0563 7.7240 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8932 -0.5138 0.8901 30 1 1.3617 1.8096 -1.9454 31 1 2.0922 3.1802 -1.0757 32 1 3.2793 3.5871 -4.5383 33 1 1.1984 4.9279 2.3305 34 1 1.1672 4.4458 0.6172 35 1 -0.3276 4.3988 1.5826 36 1 0.2273 1.0675 2.6998 37 1 -0.9011 2.4432 2.6542 38 1 -0.9990 1.2906 5.0887 39 1 0.7668 3.0060 6.8492 40 1 -0.1604 0.0441 7.3023 41 1 0.7966 1.0755 8.4949 42 1 -1.0962 2.7631 8.5536 43 1 -2.0529 1.7321 7.3608 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336912160.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:09 Heat of formation + Delta-G solvation = -105.919919 kcal Electronic energy + Delta-G solvation = -26245.054049 eV Core-core repulsion = 22452.300331 eV Total energy + Delta-G solvation = -3792.753718 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.91166 -38.42533 -38.19531 -37.69382 -36.88837 -36.67256 -34.71790 -33.92386 -31.54497 -29.69503 -28.50552 -26.31395 -24.93740 -23.29108 -23.24590 -23.04259 -21.79930 -19.90669 -19.09341 -18.72256 -18.31136 -18.06935 -17.76036 -17.16278 -16.61180 -16.16379 -15.86209 -15.46160 -15.43197 -15.07247 -14.84579 -14.68402 -14.13838 -14.08612 -13.80223 -13.67583 -13.60903 -13.35565 -13.30846 -13.07304 -12.80446 -12.73646 -12.69999 -12.57877 -12.44342 -12.30915 -12.18029 -12.16056 -11.76035 -11.66429 -11.47894 -11.32412 -10.59320 -10.08989 -9.80695 -9.74481 -8.20892 -6.31972 -0.45240 1.37219 1.40236 1.50560 1.51020 1.90661 2.10228 2.39448 2.59189 3.00000 3.09954 3.32568 3.60696 3.76446 3.86183 4.02423 4.08136 4.09173 4.15512 4.39607 4.47326 4.49728 4.63354 4.73982 4.78241 4.80648 4.88073 4.91447 5.04162 5.06797 5.16071 5.19214 5.22613 5.38862 5.45927 5.52055 5.57102 5.71999 5.98151 6.11765 6.51412 6.75633 7.22618 7.36503 8.86545 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.026993 B = 0.003464 C = 0.003394 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1037.043992 B = 8080.653937 C = 8247.364927 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.103 3.897 3 N -0.993 5.993 4 C 0.275 3.725 5 C -0.551 4.551 6 H 0.047 0.953 7 C 0.015 3.985 8 N -0.921 5.921 9 Si 0.952 3.048 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.278 1.278 13 S 2.789 3.211 14 O -1.012 7.012 15 O -1.007 7.007 16 N -0.991 5.991 17 C 0.095 3.905 18 C 0.100 3.900 19 C 0.493 3.507 20 O -0.581 6.581 21 N -0.686 5.686 22 C 0.044 3.956 23 C -0.190 4.190 24 C -0.161 4.161 25 H 0.053 0.947 26 H 0.092 0.908 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.083 0.917 30 H 0.035 0.965 31 H 0.015 0.985 32 H 0.268 0.732 33 H 0.046 0.954 34 H 0.057 0.943 35 H 0.115 0.885 36 H 0.127 0.873 37 H 0.164 0.836 38 H 0.421 0.579 39 H 0.108 0.892 40 H 0.108 0.892 41 H 0.103 0.897 42 H 0.111 0.889 43 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.829 -5.936 17.193 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.023 4.023 3 N -0.835 5.835 4 C 0.152 3.848 5 C -0.591 4.591 6 H 0.066 0.934 7 C -0.185 4.185 8 N -0.561 5.561 9 Si 0.777 3.223 10 H -0.188 1.188 11 H -0.203 1.203 12 H -0.203 1.203 13 S 2.799 3.201 14 O -0.996 6.996 15 O -0.990 6.990 16 N -0.831 5.831 17 C -0.050 4.050 18 C -0.028 4.028 19 C 0.278 3.722 20 O -0.459 6.459 21 N -0.338 5.338 22 C -0.062 4.062 23 C -0.229 4.229 24 C -0.199 4.199 25 H 0.072 0.928 26 H 0.110 0.890 27 H 0.087 0.913 28 H 0.092 0.908 29 H 0.101 0.899 30 H 0.053 0.947 31 H 0.033 0.967 32 H 0.077 0.923 33 H 0.064 0.936 34 H 0.076 0.924 35 H 0.133 0.867 36 H 0.145 0.855 37 H 0.181 0.819 38 H 0.259 0.741 39 H 0.126 0.874 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.129 0.871 43 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.355 -5.269 17.601 23.944 hybrid contribution 0.776 -0.031 -0.822 1.131 sum -14.578 -5.300 16.779 22.851 Atomic orbital electron populations 1.22239 0.93628 1.03741 1.02643 1.21485 0.96169 0.81127 1.03481 1.57696 1.81553 1.22722 1.21541 1.18596 0.95804 0.90238 0.80210 1.21839 1.03505 1.27698 1.06040 0.93443 1.25686 1.00713 0.94699 0.97407 1.69988 1.37646 1.30846 1.17595 0.85643 0.79828 0.78411 0.78381 1.18765 1.20260 1.20334 1.01529 0.73653 0.72411 0.72540 1.93540 1.61855 1.59338 1.84839 1.93472 1.83797 1.58333 1.63423 1.57478 1.42393 1.23311 1.59873 1.21603 1.04190 0.79800 0.99411 1.21563 0.97539 0.99147 0.84591 1.21832 0.81424 0.79576 0.89335 1.90692 1.31999 1.38112 1.85138 1.45193 1.35938 1.48472 1.04243 1.21616 1.03645 1.01773 0.79150 1.23509 1.02331 0.95532 1.01516 1.23457 0.94424 1.02029 1.00038 0.92776 0.88954 0.91310 0.90754 0.89852 0.94722 0.96730 0.92321 0.93569 0.92412 0.86684 0.85549 0.81905 0.74071 0.87425 0.87376 0.87907 0.87088 0.86390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.70 10.24 71.98 0.74 -2.96 16 2 C 0.10 3.35 6.40 86.38 0.55 3.90 16 3 N -0.99 -41.46 2.82 -519.83 -1.47 -42.93 16 4 C 0.28 13.97 5.10 85.63 0.44 14.40 16 5 C -0.55 -31.84 9.38 25.60 0.24 -31.60 16 6 H 0.05 2.78 7.81 -2.91 -0.02 2.76 16 7 C 0.01 0.84 5.46 84.65 0.46 1.30 16 8 N -0.92 -54.10 13.29 21.45 0.28 -53.81 16 9 Si 0.95 45.40 29.54 68.60 2.03 47.43 16 10 H -0.26 -11.72 7.11 99.48 0.71 -11.01 16 11 H -0.28 -12.81 7.11 99.48 0.71 -12.10 16 12 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 13 S 2.79 120.20 5.97 -56.49 -0.34 119.86 16 14 O -1.01 -54.51 16.18 -128.00 -2.07 -56.58 16 15 O -1.01 -44.35 15.66 -128.00 -2.00 -46.36 16 16 N -0.99 -31.38 2.73 -543.22 -1.48 -32.86 16 17 C 0.09 2.77 10.32 127.77 1.32 4.08 16 18 C 0.10 2.13 5.17 85.63 0.44 2.57 16 19 C 0.49 12.86 7.89 87.66 0.69 13.55 16 20 O -0.58 -21.81 15.99 -3.01 -0.05 -21.86 16 21 N -0.69 -11.83 5.57 -442.52 -2.46 -14.30 16 22 C 0.04 0.79 6.43 44.99 0.29 1.08 16 23 C -0.19 -2.44 10.46 30.59 0.32 -2.12 16 24 C -0.16 -1.62 10.45 30.59 0.32 -1.30 16 25 H 0.05 1.36 8.14 -2.39 -0.02 1.34 16 26 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 27 H 0.07 1.22 6.08 -2.39 -0.01 1.20 16 28 H 0.07 2.57 8.11 -2.39 -0.02 2.56 16 29 H 0.08 2.57 6.92 -2.38 -0.02 2.55 16 30 H 0.03 1.75 8.11 -2.38 -0.02 1.73 16 31 H 0.01 0.81 7.26 -2.39 -0.02 0.79 16 32 H 0.27 14.77 8.31 -92.70 -0.77 14.00 16 33 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.06 1.94 7.44 -2.38 -0.02 1.93 16 35 H 0.11 2.18 7.94 -2.39 -0.02 2.16 16 36 H 0.13 2.27 6.36 -2.39 -0.02 2.25 16 37 H 0.16 1.66 7.96 -2.39 -0.02 1.64 16 38 H 0.42 3.60 8.83 -92.71 -0.82 2.78 16 39 H 0.11 2.57 7.40 -2.39 -0.02 2.55 16 40 H 0.11 1.18 8.14 -2.39 -0.02 1.16 16 41 H 0.10 1.28 8.14 -2.39 -0.02 1.27 16 42 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 43 H 0.12 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -85.56 371.89 -1.56 -87.12 By element: Atomic # 1 Polarization: 11.18 SS G_CDS: 0.20 Total: 11.38 kcal Atomic # 6 Polarization: -2.90 SS G_CDS: 5.81 Total: 2.91 kcal Atomic # 7 Polarization: -138.77 SS G_CDS: -5.13 Total: -143.90 kcal Atomic # 8 Polarization: -120.67 SS G_CDS: -4.12 Total: -124.79 kcal Atomic # 14 Polarization: 45.40 SS G_CDS: 2.03 Total: 47.43 kcal Atomic # 16 Polarization: 120.20 SS G_CDS: -0.34 Total: 119.86 kcal Total: -85.56 -1.56 -87.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336912160.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.802 kcal (2) G-P(sol) polarization free energy of solvation -85.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -104.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds