Wall clock time and date at job start Fri Apr 10 2020 18:18:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47501 * 2 1 4 4 C 1.46501 * 119.99751 * 84.12473 * 3 2 1 5 5 C 1.50696 * 109.46764 * 85.00853 * 4 3 2 6 6 H 1.07994 * 120.00484 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99848 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00231 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47188 * 89.99292 * 9 7 5 11 11 H 1.48497 * 109.47047 * 209.99740 * 9 7 5 12 12 H 1.48502 * 109.46902 * 329.99512 * 9 7 5 13 13 S 1.65602 * 119.99817 * 264.13285 * 3 2 1 14 14 O 1.42092 * 106.40354 * 29.30042 * 13 3 2 15 15 O 1.42101 * 106.40007 * 162.22096 * 13 3 2 16 16 N 1.65595 * 107.21477 * 275.75689 * 13 3 2 17 17 C 1.46970 * 120.59607 * 263.44498 * 16 13 3 18 18 C 1.53819 * 108.39750 * 124.76017 * 17 16 13 19 19 N 1.46961 * 108.57842 * 49.63808 * 18 17 16 20 20 C 1.34776 * 120.59491 * 124.62438 * 19 18 17 21 21 C 1.50706 * 119.99791 * 0.02562 * 20 19 18 22 22 O 1.21275 * 120.00639 * 180.02562 * 20 19 18 23 23 C 1.46968 * 118.81557 * 304.64767 * 19 18 17 24 24 C 1.46963 * 120.59444 * 83.73089 * 16 13 3 25 25 H 1.08999 * 109.46949 * 54.99586 * 1 2 3 26 26 H 1.08996 * 109.47229 * 175.00151 * 1 2 3 27 27 H 1.09005 * 109.47128 * 294.99996 * 1 2 3 28 28 H 1.08997 * 109.47491 * 120.00208 * 2 1 3 29 29 H 1.09004 * 109.47075 * 239.99650 * 2 1 3 30 30 H 1.08999 * 109.46704 * 205.00174 * 4 3 2 31 31 H 1.09001 * 109.47124 * 325.00255 * 4 3 2 32 32 H 0.96996 * 119.99774 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.61484 * 244.54296 * 17 16 13 34 34 H 1.08997 * 109.60477 * 5.05843 * 17 16 13 35 35 H 1.09000 * 109.73928 * 289.85305 * 18 17 16 36 36 H 1.08995 * 109.52985 * 169.30366 * 18 17 16 37 37 H 1.09000 * 109.46954 * 59.99756 * 21 20 19 38 38 H 1.08998 * 109.47167 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.47147 * 300.00596 * 21 20 19 40 40 H 1.08999 * 109.60969 * 295.48409 * 23 19 18 41 41 H 1.08998 * 109.61183 * 174.96424 * 23 19 18 42 42 H 1.09001 * 109.60987 * 354.94442 * 24 16 13 43 43 H 1.09000 * 109.61164 * 115.45937 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1402 2.1150 1.2621 5 6 3.4677 1.7984 1.9011 6 1 4.1520 1.1182 1.4160 7 6 3.8081 2.3762 3.1058 8 7 2.9746 3.2041 3.6970 9 14 5.4534 1.9832 3.8984 10 1 6.4741 2.9536 3.4275 11 1 5.3262 2.0758 5.3750 12 1 5.8678 0.6075 3.5226 13 16 2.4327 2.1129 -1.4267 14 8 1.6215 1.5206 -2.4318 15 8 2.4549 3.5102 -1.1693 16 7 3.9931 1.6753 -1.7669 17 6 5.1127 2.5567 -1.4069 18 6 6.1001 1.7576 -0.5394 19 7 6.3897 0.4836 -1.2124 20 6 7.6596 0.1278 -1.4902 21 6 8.7979 1.0393 -1.1097 22 8 7.8864 -0.9258 -2.0463 23 6 5.2698 -0.3952 -1.5775 24 6 4.2828 0.4013 -2.4400 25 1 -0.3633 0.5895 -0.8418 26 1 -0.3633 -1.0237 -0.0895 27 1 -0.3633 0.4343 0.9314 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.0769 3.1856 1.0674 31 1 1.3339 1.8195 1.9335 32 1 3.2143 3.6109 4.5442 33 1 5.6127 2.9013 -2.3119 34 1 4.7384 3.4120 -0.8443 35 1 5.6577 1.5629 0.4376 36 1 7.0223 2.3260 -0.4195 37 1 8.7969 1.1906 -0.0303 38 1 9.7423 0.5871 -1.4128 39 1 8.6777 1.9995 -1.6113 40 1 4.7683 -0.7432 -0.6745 41 1 5.6438 -1.2485 -2.1433 42 1 3.3605 -0.1671 -2.5599 43 1 4.7252 0.5960 -3.4169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000336918895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:14 Heat of formation + Delta-G solvation = -103.098745 kcal Electronic energy + Delta-G solvation = -27557.762985 eV Core-core repulsion = 23765.131602 eV Total energy + Delta-G solvation = -3792.631382 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.97466 -37.38754 -36.82273 -36.08521 -35.30350 -33.82355 -32.80802 -31.64781 -29.99940 -29.62328 -26.79702 -26.54120 -23.84279 -23.20409 -22.14446 -21.55522 -19.59917 -18.17513 -17.44312 -16.99175 -16.50665 -16.28152 -16.09099 -15.74770 -15.51700 -14.97415 -14.45249 -14.26387 -13.85595 -13.63541 -13.59294 -13.33494 -12.98502 -12.79431 -12.31775 -12.21912 -12.13873 -12.10742 -12.01018 -11.76670 -11.69849 -11.42701 -11.37477 -11.15460 -11.13217 -11.04109 -10.83906 -10.57293 -10.45086 -10.14669 -9.87706 -9.74653 -9.34560 -8.58604 -8.31578 -8.09885 -6.19705 -4.26496 1.13533 2.65815 3.00598 3.13953 3.23588 3.24347 3.38306 4.00965 4.26192 4.57427 4.75331 4.80980 5.01335 5.14015 5.17125 5.24245 5.25137 5.30668 5.37956 5.42851 5.45451 5.63240 5.69455 5.73698 5.77876 5.81879 5.95758 6.03508 6.10804 6.24298 6.28556 6.51519 6.58469 6.62075 6.74239 7.29492 7.37453 7.45759 7.58906 7.77578 8.07825 8.19071 8.77856 9.38995 10.88334 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.007909 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.029919 B = 3539.278888 C = 5304.695973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.131 3.869 3 N -0.990 5.990 4 C 0.246 3.754 5 C -0.539 4.539 6 H 0.064 0.936 7 C 0.067 3.933 8 N -0.887 5.887 9 Si 0.885 3.115 10 H -0.277 1.277 11 H -0.285 1.285 12 H -0.273 1.273 13 S 2.783 3.217 14 O -0.995 6.995 15 O -0.974 6.974 16 N -1.006 6.006 17 C 0.115 3.885 18 C 0.081 3.919 19 N -0.605 5.605 20 C 0.512 3.488 21 C -0.175 4.175 22 O -0.558 6.558 23 C 0.096 3.904 24 C 0.113 3.887 25 H 0.056 0.944 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.080 0.920 29 H 0.058 0.942 30 H 0.051 0.949 31 H 0.038 0.962 32 H 0.265 0.735 33 H 0.066 0.934 34 H 0.111 0.889 35 H 0.102 0.898 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.088 0.912 40 H 0.077 0.923 41 H 0.098 0.902 42 H 0.094 0.906 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.904 -3.754 -8.031 10.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.004 3.996 3 N -0.832 5.832 4 C 0.124 3.876 5 C -0.578 4.578 6 H 0.082 0.918 7 C -0.137 4.137 8 N -0.525 5.525 9 Si 0.713 3.287 10 H -0.203 1.203 11 H -0.211 1.211 12 H -0.198 1.198 13 S 2.792 3.208 14 O -0.979 6.979 15 O -0.958 6.958 16 N -0.844 5.844 17 C -0.012 4.012 18 C -0.043 4.043 19 N -0.338 5.338 20 C 0.302 3.698 21 C -0.234 4.234 22 O -0.437 6.437 23 C -0.028 4.028 24 C -0.014 4.014 25 H 0.075 0.925 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.098 0.902 29 H 0.077 0.923 30 H 0.069 0.931 31 H 0.056 0.944 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.120 0.880 36 H 0.109 0.891 37 H 0.107 0.893 38 H 0.108 0.892 39 H 0.107 0.893 40 H 0.096 0.904 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 4.433 -3.601 -8.677 10.388 hybrid contribution 1.131 -0.344 1.005 1.551 sum 5.564 -3.945 -7.673 10.266 Atomic orbital electron populations 1.22197 0.96786 1.01368 1.02495 1.20983 0.93831 0.82916 1.01856 1.57779 1.78134 1.22829 1.24440 1.19194 0.97410 0.92141 0.78899 1.21547 1.02631 1.27787 1.05869 0.91781 1.24930 0.96964 0.94878 0.96901 1.69923 1.35675 1.29427 1.17426 0.86714 0.84207 0.78773 0.79055 1.20290 1.21106 1.19811 1.01917 0.72529 0.73418 0.72928 1.93544 1.66472 1.79460 1.58447 1.93570 1.86261 1.30385 1.85580 1.58245 1.24584 1.28409 1.73131 1.21782 0.87541 0.92910 0.98937 1.22554 1.00044 0.83933 0.97783 1.48018 1.05769 1.21061 1.58956 1.20788 0.83911 0.87019 0.78122 1.21943 0.97291 1.00352 1.03844 1.90675 1.84289 1.25303 1.43391 1.21992 0.87250 0.93406 1.00140 1.21686 0.99756 0.84370 0.95543 0.92518 0.92389 0.92101 0.90197 0.92343 0.93120 0.94401 0.92535 0.91573 0.87042 0.88003 0.89061 0.89267 0.89247 0.89327 0.90437 0.88347 0.88771 0.91131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.54 10.23 37.16 0.38 -2.16 16 2 C 0.13 2.10 6.07 -4.04 -0.02 2.08 16 3 N -0.99 -18.87 2.83 -115.66 -0.33 -19.20 16 4 C 0.25 5.65 5.41 -5.19 -0.03 5.62 16 5 C -0.54 -12.78 9.15 -34.44 -0.32 -13.09 16 6 H 0.06 1.44 5.88 -52.49 -0.31 1.13 16 7 C 0.07 1.67 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -23.93 13.29 55.43 0.74 -23.19 16 9 Si 0.89 19.10 29.54 -169.99 -5.02 14.08 16 10 H -0.28 -5.77 7.11 56.52 0.40 -5.37 16 11 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 12 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 13 S 2.78 52.08 6.02 -107.50 -0.65 51.44 16 14 O -1.00 -19.35 16.17 -57.17 -0.92 -20.28 16 15 O -0.97 -21.26 15.11 -57.17 -0.86 -22.12 16 16 N -1.01 -15.56 3.32 -113.00 -0.37 -15.94 16 17 C 0.11 1.63 6.61 -3.36 -0.02 1.61 16 18 C 0.08 1.09 6.52 -3.36 -0.02 1.07 16 19 N -0.60 -8.34 2.95 -172.21 -0.51 -8.85 16 20 C 0.51 7.16 7.81 -10.98 -0.09 7.08 16 21 C -0.17 -1.73 8.66 36.01 0.31 -1.42 16 22 O -0.56 -9.66 16.49 5.56 0.09 -9.57 16 23 C 0.10 1.29 6.59 -3.59 -0.02 1.27 16 24 C 0.11 1.49 6.52 -3.59 -0.02 1.47 16 25 H 0.06 0.90 8.09 -51.93 -0.42 0.48 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 28 H 0.08 1.29 8.11 -51.93 -0.42 0.87 16 29 H 0.06 0.81 7.17 -51.93 -0.37 0.44 16 30 H 0.05 1.30 6.87 -51.93 -0.36 0.94 16 31 H 0.04 0.92 8.11 -51.93 -0.42 0.50 16 32 H 0.26 6.82 8.31 -40.82 -0.34 6.48 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 34 H 0.11 1.76 6.92 -51.93 -0.36 1.40 16 35 H 0.10 1.65 5.91 -51.93 -0.31 1.35 16 36 H 0.09 0.97 5.91 -51.93 -0.31 0.67 16 37 H 0.09 0.81 7.91 -51.93 -0.41 0.40 16 38 H 0.09 0.83 8.12 -51.93 -0.42 0.41 16 39 H 0.09 0.70 7.72 -51.93 -0.40 0.30 16 40 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 41 H 0.10 1.30 6.99 -51.93 -0.36 0.94 16 42 H 0.09 1.16 6.71 -51.93 -0.35 0.82 16 43 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 LS Contribution 355.51 15.07 5.36 5.36 Total: -1.00 -31.59 355.51 -8.90 -40.49 By element: Atomic # 1 Polarization: 9.15 SS G_CDS: -6.47 Total: 2.68 kcal Atomic # 6 Polarization: 5.05 SS G_CDS: 0.05 Total: 5.10 kcal Atomic # 7 Polarization: -66.70 SS G_CDS: -0.47 Total: -67.17 kcal Atomic # 8 Polarization: -50.27 SS G_CDS: -1.70 Total: -51.97 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 52.08 SS G_CDS: -0.65 Total: 51.44 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -31.59 -8.90 -40.49 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336918895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.613 kcal (2) G-P(sol) polarization free energy of solvation -31.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.202 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.897 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds