Wall clock time and date at job start Fri Apr 10 2020 18:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46501 * 109.47501 * 2 1 4 4 C 1.46501 * 119.99751 * 84.12473 * 3 2 1 5 5 C 1.50696 * 109.46764 * 85.00853 * 4 3 2 6 6 H 1.07994 * 120.00484 * 359.97438 * 5 4 3 7 7 C 1.37875 * 119.99848 * 180.02562 * 5 4 3 8 8 N 1.31521 * 120.00231 * 359.97438 * 7 5 4 9 9 Si 1.86802 * 120.00169 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47188 * 89.99292 * 9 7 5 11 11 H 1.48497 * 109.47047 * 209.99740 * 9 7 5 12 12 H 1.48502 * 109.46902 * 329.99512 * 9 7 5 13 13 S 1.65602 * 119.99817 * 264.13285 * 3 2 1 14 14 O 1.42092 * 106.40354 * 29.30042 * 13 3 2 15 15 O 1.42101 * 106.40007 * 162.22096 * 13 3 2 16 16 N 1.65595 * 107.21477 * 275.75689 * 13 3 2 17 17 C 1.46970 * 120.59607 * 263.44498 * 16 13 3 18 18 C 1.53819 * 108.39750 * 124.76017 * 17 16 13 19 19 N 1.46961 * 108.57842 * 49.63808 * 18 17 16 20 20 C 1.34776 * 120.59491 * 124.62438 * 19 18 17 21 21 C 1.50706 * 119.99791 * 0.02562 * 20 19 18 22 22 O 1.21275 * 120.00639 * 180.02562 * 20 19 18 23 23 C 1.46968 * 118.81557 * 304.64767 * 19 18 17 24 24 C 1.46963 * 120.59444 * 83.73089 * 16 13 3 25 25 H 1.08999 * 109.46949 * 54.99586 * 1 2 3 26 26 H 1.08996 * 109.47229 * 175.00151 * 1 2 3 27 27 H 1.09005 * 109.47128 * 294.99996 * 1 2 3 28 28 H 1.08997 * 109.47491 * 120.00208 * 2 1 3 29 29 H 1.09004 * 109.47075 * 239.99650 * 2 1 3 30 30 H 1.08999 * 109.46704 * 205.00174 * 4 3 2 31 31 H 1.09001 * 109.47124 * 325.00255 * 4 3 2 32 32 H 0.96996 * 119.99774 * 180.02562 * 8 7 5 33 33 H 1.08994 * 109.61484 * 244.54296 * 17 16 13 34 34 H 1.08997 * 109.60477 * 5.05843 * 17 16 13 35 35 H 1.09000 * 109.73928 * 289.85305 * 18 17 16 36 36 H 1.08995 * 109.52985 * 169.30366 * 18 17 16 37 37 H 1.09000 * 109.46954 * 59.99756 * 21 20 19 38 38 H 1.08998 * 109.47167 * 180.02562 * 21 20 19 39 39 H 1.09002 * 109.47147 * 300.00596 * 21 20 19 40 40 H 1.08999 * 109.60969 * 295.48409 * 23 19 18 41 41 H 1.08998 * 109.61183 * 174.96424 * 23 19 18 42 42 H 1.09001 * 109.60987 * 354.94442 * 24 16 13 43 43 H 1.09000 * 109.61164 * 115.45937 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1402 2.1150 1.2621 5 6 3.4677 1.7984 1.9011 6 1 4.1520 1.1182 1.4160 7 6 3.8081 2.3762 3.1058 8 7 2.9746 3.2041 3.6970 9 14 5.4534 1.9832 3.8984 10 1 6.4741 2.9536 3.4275 11 1 5.3262 2.0758 5.3750 12 1 5.8678 0.6075 3.5226 13 16 2.4327 2.1129 -1.4267 14 8 1.6215 1.5206 -2.4318 15 8 2.4549 3.5102 -1.1693 16 7 3.9931 1.6753 -1.7669 17 6 5.1127 2.5567 -1.4069 18 6 6.1001 1.7576 -0.5394 19 7 6.3897 0.4836 -1.2124 20 6 7.6596 0.1278 -1.4902 21 6 8.7979 1.0393 -1.1097 22 8 7.8864 -0.9258 -2.0463 23 6 5.2698 -0.3952 -1.5775 24 6 4.2828 0.4013 -2.4400 25 1 -0.3633 0.5895 -0.8418 26 1 -0.3633 -1.0237 -0.0895 27 1 -0.3633 0.4343 0.9314 28 1 1.8934 -0.5138 0.8899 29 1 1.8933 -0.5139 -0.8900 30 1 2.0769 3.1856 1.0674 31 1 1.3339 1.8195 1.9335 32 1 3.2143 3.6109 4.5442 33 1 5.6127 2.9013 -2.3119 34 1 4.7384 3.4120 -0.8443 35 1 5.6577 1.5629 0.4376 36 1 7.0223 2.3260 -0.4195 37 1 8.7969 1.1906 -0.0303 38 1 9.7423 0.5871 -1.4128 39 1 8.6777 1.9995 -1.6113 40 1 4.7683 -0.7432 -0.6745 41 1 5.6438 -1.2485 -2.1433 42 1 3.3605 -0.1671 -2.5599 43 1 4.7252 0.5960 -3.4169 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000336918895.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:13 Heat of formation + Delta-G solvation = -125.657280 kcal Electronic energy + Delta-G solvation = -27558.741196 eV Core-core repulsion = 23765.131602 eV Total energy + Delta-G solvation = -3793.609594 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.06218 -38.54922 -38.39262 -37.63537 -36.89244 -34.98698 -34.64593 -32.71081 -31.49968 -30.54390 -28.46588 -27.72726 -25.09734 -24.73135 -23.42124 -22.88341 -20.80266 -19.48661 -18.77338 -18.57957 -18.21624 -17.50831 -17.43892 -16.96309 -16.58565 -16.44292 -15.96855 -15.40887 -15.29842 -14.82595 -14.79718 -14.63126 -14.46292 -13.77597 -13.73549 -13.67722 -13.53548 -13.34565 -13.32371 -13.03372 -13.02277 -12.93363 -12.74138 -12.63431 -12.52932 -12.37452 -12.22119 -12.08391 -11.97530 -11.70531 -11.52482 -10.88532 -10.58769 -10.49173 -9.74416 -9.43065 -8.11100 -6.23828 -0.34529 1.44795 1.48614 1.56084 1.61886 1.84408 2.11766 2.45471 2.55712 3.21239 3.34518 3.55764 3.73662 3.91652 3.97999 4.22126 4.24542 4.30933 4.33226 4.43706 4.47917 4.50086 4.61622 4.65067 4.68758 4.71760 4.87705 4.93813 4.99854 5.04686 5.13513 5.17636 5.32728 5.41747 5.45893 5.49880 5.63372 5.82939 6.01042 6.17922 6.41931 6.88487 7.14092 7.45868 8.97343 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.009885 B = 0.007909 C = 0.005277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2832.029919 B = 3539.278888 C = 5304.695973 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.122 3.878 3 N -0.995 5.995 4 C 0.261 3.739 5 C -0.531 4.531 6 H 0.078 0.922 7 C 0.015 3.985 8 N -0.930 5.930 9 Si 0.947 3.053 10 H -0.261 1.261 11 H -0.296 1.296 12 H -0.264 1.264 13 S 2.794 3.206 14 O -1.003 7.003 15 O -1.009 7.009 16 N -1.002 6.002 17 C 0.109 3.891 18 C 0.085 3.915 19 N -0.606 5.606 20 C 0.507 3.493 21 C -0.171 4.171 22 O -0.596 6.596 23 C 0.096 3.904 24 C 0.113 3.887 25 H 0.045 0.955 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.079 0.921 29 H 0.084 0.916 30 H 0.018 0.982 31 H 0.017 0.983 32 H 0.263 0.737 33 H 0.095 0.905 34 H 0.092 0.908 35 H 0.076 0.924 36 H 0.126 0.874 37 H 0.102 0.898 38 H 0.094 0.906 39 H 0.113 0.887 40 H 0.072 0.928 41 H 0.101 0.899 42 H 0.103 0.897 43 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.958 -4.691 -8.899 12.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.003 4.003 3 N -0.835 5.835 4 C 0.138 3.862 5 C -0.570 4.570 6 H 0.096 0.904 7 C -0.184 4.184 8 N -0.570 5.570 9 Si 0.772 3.228 10 H -0.185 1.185 11 H -0.222 1.222 12 H -0.188 1.188 13 S 2.804 3.196 14 O -0.987 6.987 15 O -0.994 6.994 16 N -0.843 5.843 17 C -0.017 4.017 18 C -0.039 4.039 19 N -0.338 5.338 20 C 0.299 3.701 21 C -0.230 4.230 22 O -0.478 6.478 23 C -0.028 4.028 24 C -0.013 4.013 25 H 0.064 0.936 26 H 0.108 0.892 27 H 0.066 0.934 28 H 0.098 0.902 29 H 0.103 0.897 30 H 0.036 0.964 31 H 0.035 0.965 32 H 0.072 0.928 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.144 0.856 37 H 0.120 0.880 38 H 0.113 0.887 39 H 0.132 0.868 40 H 0.090 0.910 41 H 0.119 0.881 42 H 0.121 0.879 43 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 6.477 -4.548 -9.565 12.415 hybrid contribution 0.456 -0.094 1.201 1.288 sum 6.933 -4.642 -8.364 11.814 Atomic orbital electron populations 1.22185 0.96053 1.03091 1.01306 1.21245 0.94575 0.81406 1.03102 1.57686 1.78945 1.23864 1.23032 1.18727 0.96752 0.90699 0.80065 1.21825 1.02701 1.26995 1.05500 0.90362 1.25729 1.00246 0.94789 0.97673 1.70072 1.37840 1.31140 1.17928 0.85727 0.80534 0.79259 0.77274 1.18541 1.22210 1.18798 1.01391 0.73158 0.72501 0.72565 1.93526 1.67397 1.79352 1.58387 1.93521 1.87032 1.32831 1.85990 1.58002 1.23661 1.29526 1.73069 1.21952 0.87192 0.92292 1.00242 1.22508 1.01198 0.84078 0.96068 1.48110 1.06013 1.21020 1.58688 1.21524 0.84539 0.86952 0.77133 1.21994 0.95620 1.00488 1.04870 1.90661 1.84775 1.27157 1.45221 1.21975 0.87325 0.93565 0.99964 1.21862 1.00310 0.83210 0.95871 0.93562 0.89198 0.93428 0.90212 0.89738 0.96429 0.96523 0.92801 0.88649 0.88956 0.90617 0.85635 0.87965 0.88712 0.86831 0.90970 0.88127 0.87906 0.89580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.89 10.23 71.98 0.74 -4.16 16 2 C 0.12 3.81 6.07 86.38 0.52 4.33 16 3 N -0.99 -38.03 2.83 -519.85 -1.47 -39.50 16 4 C 0.26 12.36 5.41 85.63 0.46 12.83 16 5 C -0.53 -25.22 9.15 25.60 0.23 -24.99 16 6 H 0.08 3.43 5.88 -2.91 -0.02 3.42 16 7 C 0.01 0.75 5.46 84.65 0.46 1.21 16 8 N -0.93 -51.35 13.29 21.45 0.28 -51.07 16 9 Si 0.95 38.60 29.54 68.60 2.03 40.63 16 10 H -0.26 -9.87 7.11 99.48 0.71 -9.16 16 11 H -0.30 -12.51 7.11 99.48 0.71 -11.80 16 12 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 13 S 2.79 103.74 6.02 -56.49 -0.34 103.40 16 14 O -1.00 -38.03 16.17 -128.00 -2.07 -40.10 16 15 O -1.01 -44.93 15.11 -128.00 -1.93 -46.86 16 16 N -1.00 -29.43 3.32 -511.41 -1.70 -31.12 16 17 C 0.11 2.89 6.61 86.57 0.57 3.46 16 18 C 0.09 2.08 6.52 86.57 0.56 2.64 16 19 N -0.61 -15.08 2.95 -817.13 -2.41 -17.49 16 20 C 0.51 12.78 7.81 87.66 0.68 13.46 16 21 C -0.17 -2.72 8.66 71.24 0.62 -2.10 16 22 O -0.60 -19.58 16.49 -3.01 -0.05 -19.63 16 23 C 0.10 2.37 6.59 86.42 0.57 2.94 16 24 C 0.11 2.72 6.52 86.42 0.56 3.29 16 25 H 0.05 1.44 8.09 -2.39 -0.02 1.42 16 26 H 0.09 2.03 8.14 -2.39 -0.02 2.01 16 27 H 0.05 1.49 8.14 -2.38 -0.02 1.47 16 28 H 0.08 2.49 8.11 -2.39 -0.02 2.47 16 29 H 0.08 2.18 7.17 -2.39 -0.02 2.17 16 30 H 0.02 0.95 6.87 -2.39 -0.02 0.94 16 31 H 0.02 0.85 8.11 -2.39 -0.02 0.83 16 32 H 0.26 13.88 8.31 -92.71 -0.77 13.11 16 33 H 0.10 1.99 8.14 -2.39 -0.02 1.97 16 34 H 0.09 2.85 6.92 -2.39 -0.02 2.84 16 35 H 0.08 2.29 5.91 -2.39 -0.01 2.28 16 36 H 0.13 2.17 5.91 -2.39 -0.01 2.15 16 37 H 0.10 1.41 7.91 -2.39 -0.02 1.39 16 38 H 0.09 1.44 8.12 -2.39 -0.02 1.42 16 39 H 0.11 1.26 7.72 -2.39 -0.02 1.24 16 40 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 41 H 0.10 2.47 6.99 -2.39 -0.02 2.46 16 42 H 0.10 2.29 6.71 -2.39 -0.02 2.28 16 43 H 0.09 1.85 8.14 -2.39 -0.02 1.83 16 Total: -1.00 -69.15 355.51 -0.65 -69.80 By element: Atomic # 1 Polarization: 17.99 SS G_CDS: 1.01 Total: 19.01 kcal Atomic # 6 Polarization: 6.93 SS G_CDS: 5.99 Total: 12.93 kcal Atomic # 7 Polarization: -133.89 SS G_CDS: -5.29 Total: -139.17 kcal Atomic # 8 Polarization: -102.53 SS G_CDS: -4.05 Total: -106.59 kcal Atomic # 14 Polarization: 38.60 SS G_CDS: 2.03 Total: 40.63 kcal Atomic # 16 Polarization: 103.74 SS G_CDS: -0.34 Total: 103.40 kcal Total: -69.15 -0.65 -69.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000336918895.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.853 kcal (2) G-P(sol) polarization free energy of solvation -69.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds