Wall clock time and date at job start Fri Apr 10 2020 18:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47010 * 2 1 4 4 C 1.46497 * 120.00238 * 273.74994 * 3 2 1 5 5 C 1.50697 * 109.47038 * 275.00112 * 4 3 2 6 6 H 1.07996 * 120.00542 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99926 * 179.97438 * 5 4 3 8 8 N 1.31525 * 119.99902 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00109 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47152 * 60.00018 * 9 7 5 11 11 H 1.48506 * 109.47070 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46877 * 299.99918 * 9 7 5 13 13 S 1.65604 * 119.99834 * 93.75069 * 3 2 1 14 14 O 1.42104 * 106.40036 * 329.97583 * 13 3 2 15 15 O 1.42093 * 106.40100 * 197.05917 * 13 3 2 16 16 N 1.65597 * 107.21932 * 83.51464 * 13 3 2 17 17 C 1.46506 * 119.99713 * 67.34950 * 16 13 3 18 18 H 1.09000 * 109.39968 * 341.42412 * 17 16 13 19 19 C 1.53067 * 109.33272 * 221.63581 * 17 16 13 20 20 C 1.53344 * 108.42653 * 191.01606 * 19 17 16 21 21 C 1.52913 * 108.67527 * 67.53207 * 20 19 17 22 22 N 1.45778 * 110.42075 * 309.03074 * 21 20 19 23 23 C 1.46506 * 117.96108 * 199.30802 * 22 21 20 24 24 C 1.33352 * 124.09162 * 19.57636 * 22 21 20 25 25 O 1.21286 * 118.24591 * 177.48372 * 24 22 21 26 26 H 1.08997 * 109.46588 * 185.04887 * 1 2 3 27 27 H 1.08993 * 109.47095 * 305.04671 * 1 2 3 28 28 H 1.09000 * 109.46992 * 65.04535 * 1 2 3 29 29 H 1.08996 * 109.47282 * 240.00557 * 2 1 3 30 30 H 1.09004 * 109.47438 * 120.00002 * 2 1 3 31 31 H 1.09004 * 109.46887 * 34.99747 * 4 3 2 32 32 H 1.08998 * 109.46940 * 154.99477 * 4 3 2 33 33 H 0.96995 * 119.99709 * 179.97438 * 8 7 5 34 34 H 0.96996 * 120.00578 * 247.35534 * 16 13 3 35 35 H 1.09002 * 109.67314 * 310.75390 * 19 17 16 36 36 H 1.08999 * 109.67174 * 71.28128 * 19 17 16 37 37 H 1.08996 * 109.60315 * 187.28919 * 20 19 17 38 38 H 1.09004 * 109.60411 * 307.77390 * 20 19 17 39 39 H 1.09005 * 109.30376 * 69.55612 * 21 20 19 40 40 H 1.09003 * 109.30481 * 189.14191 * 21 20 19 41 41 H 1.08994 * 109.46962 * 180.25264 * 23 22 21 42 42 H 1.08996 * 109.46960 * 300.25030 * 23 22 21 43 43 H 1.08996 * 109.46858 * 60.25305 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1843 2.0996 -1.2660 5 6 3.5332 1.7753 -1.8544 6 1 4.2004 1.1019 -1.3370 7 6 3.9157 2.3384 -3.0534 8 7 3.1030 3.1581 -3.6839 9 14 5.5874 1.9360 -3.7832 10 1 5.6822 0.4742 -4.0270 11 1 5.7551 2.6633 -5.0671 12 1 6.6536 2.3501 -2.8362 13 16 2.3828 2.1306 1.4311 14 8 1.5250 1.5625 2.4113 15 8 2.4309 3.5234 1.1539 16 7 3.9232 1.6819 1.8411 17 6 5.0572 2.1296 1.0287 18 1 4.6980 2.4495 0.0506 19 6 6.0439 0.9724 0.8545 20 6 7.3385 1.5265 0.2476 21 6 8.0117 2.4356 1.2766 22 7 7.0610 3.4143 1.7898 23 6 7.5939 4.6160 2.4365 24 6 5.7364 3.2816 1.7120 25 8 5.0430 4.1397 2.2159 26 1 -0.3632 -1.0237 0.0904 27 1 -0.3633 0.5901 0.8413 28 1 -0.3633 0.4336 -0.9317 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.4019 1.7956 -1.9614 32 1 2.1143 3.1725 -1.0868 33 1 3.3722 3.5545 -4.5272 34 1 4.0747 1.1226 2.6190 35 1 6.2564 0.5222 1.8242 36 1 5.6170 0.2235 0.1874 37 1 8.0061 0.7026 -0.0046 38 1 7.1057 2.0996 -0.6499 39 1 8.3904 1.8296 2.0997 40 1 8.8418 2.9612 0.8046 41 1 6.7688 5.2455 2.7696 42 1 8.2007 4.3279 3.2949 43 1 8.2086 5.1686 1.7260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337056125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:26 Heat of formation + Delta-G solvation = -108.601703 kcal Electronic energy + Delta-G solvation = -27585.953560 eV Core-core repulsion = 23793.083551 eV Total energy + Delta-G solvation = -3792.870008 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.29845 -36.52367 -36.30168 -36.01401 -35.34948 -35.01940 -32.77387 -32.04453 -29.93779 -28.23509 -26.98620 -26.62460 -23.63989 -23.13512 -22.14095 -21.72774 -19.07500 -18.50825 -17.13477 -17.04897 -16.63868 -16.26265 -16.18522 -15.91443 -15.30703 -14.81167 -14.30582 -14.02148 -13.84532 -13.64297 -13.34741 -13.21458 -12.91208 -12.55288 -12.25921 -12.10221 -12.01726 -11.90209 -11.76978 -11.59372 -11.31549 -11.20776 -11.15578 -11.12932 -11.07063 -10.96211 -10.70712 -10.48712 -10.34086 -10.11798 -9.92422 -9.77816 -8.85293 -8.57258 -8.54221 -8.06979 -6.17569 -4.25253 1.34641 2.93692 3.15390 3.15807 3.21899 3.25172 3.63624 4.24674 4.28617 4.73160 4.76994 4.83409 4.89321 5.13503 5.21197 5.34625 5.39920 5.44918 5.47062 5.53893 5.61125 5.68076 5.78974 5.85124 5.91587 5.96636 6.07589 6.14152 6.15727 6.34271 6.41270 6.54899 6.68603 6.72301 7.22071 7.35875 7.45195 7.61852 7.68897 7.80699 8.09610 8.47599 8.78659 9.39754 10.90048 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.008092 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.313398 B = 3459.388805 C = 5162.707603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.132 3.868 3 N -0.993 5.993 4 C 0.242 3.758 5 C -0.549 4.549 6 H 0.066 0.934 7 C 0.068 3.932 8 N -0.882 5.882 9 Si 0.887 3.113 10 H -0.275 1.275 11 H -0.286 1.286 12 H -0.271 1.271 13 S 2.781 3.219 14 O -1.000 7.000 15 O -0.956 6.956 16 N -1.109 6.109 17 C 0.138 3.862 18 H 0.154 0.846 19 C -0.124 4.124 20 C -0.142 4.142 21 C 0.117 3.883 22 N -0.613 5.613 23 C 0.071 3.929 24 C 0.501 3.499 25 O -0.524 6.524 26 H 0.056 0.944 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.039 0.961 32 H 0.053 0.947 33 H 0.266 0.734 34 H 0.406 0.594 35 H 0.069 0.931 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.084 0.916 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.091 0.909 42 H 0.054 0.946 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.296 -6.550 7.825 13.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.005 3.995 3 N -0.835 5.835 4 C 0.120 3.880 5 C -0.588 4.588 6 H 0.084 0.916 7 C -0.137 4.137 8 N -0.519 5.519 9 Si 0.714 3.286 10 H -0.200 1.200 11 H -0.212 1.212 12 H -0.197 1.197 13 S 2.788 3.212 14 O -0.984 6.984 15 O -0.940 6.940 16 N -0.865 5.865 17 C 0.027 3.973 18 H 0.171 0.829 19 C -0.164 4.164 20 C -0.181 4.181 21 C -0.006 4.006 22 N -0.349 5.349 23 C -0.072 4.072 24 C 0.286 3.714 25 O -0.398 6.398 26 H 0.075 0.925 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.099 0.901 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.238 0.762 35 H 0.088 0.912 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.110 0.890 42 H 0.073 0.927 43 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 8.247 -5.257 8.235 12.786 hybrid contribution 1.468 -0.739 -0.505 1.720 sum 9.716 -5.997 7.730 13.788 Atomic orbital electron populations 1.22222 0.96962 1.01306 1.02526 1.20956 0.93668 0.82931 1.01930 1.57827 1.78748 1.23044 1.23913 1.19227 0.97101 0.92709 0.78992 1.21552 1.01992 1.28713 1.06520 0.91616 1.24974 0.97237 0.94724 0.96749 1.69921 1.36058 1.29506 1.16425 0.86759 0.84330 0.78626 0.78858 1.20005 1.21181 1.19655 1.02040 0.72485 0.73916 0.72719 1.93543 1.64054 1.80320 1.60506 1.93640 1.85810 1.29962 1.84545 1.55957 1.23779 1.67206 1.39517 1.20930 0.87590 0.92103 0.96686 0.82872 1.21957 0.94577 0.97866 1.01971 1.21965 0.97137 0.99834 0.99118 1.21375 0.91714 0.90700 0.96810 1.47294 1.05878 1.22267 1.59468 1.21708 1.00316 0.88150 0.97051 1.20882 0.81762 0.88586 0.80138 1.90734 1.61931 1.41341 1.45790 0.92477 0.92385 0.92179 0.90146 0.92262 0.94265 0.92941 0.92410 0.76201 0.91200 0.89273 0.89455 0.89773 0.91950 0.90890 0.89018 0.92716 0.92498 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.71 10.24 37.16 0.38 -2.33 16 2 C 0.13 2.23 6.04 -4.04 -0.02 2.21 16 3 N -0.99 -20.24 2.82 -115.66 -0.33 -20.57 16 4 C 0.24 5.85 5.40 -5.20 -0.03 5.82 16 5 C -0.55 -13.38 7.43 -34.44 -0.26 -13.63 16 6 H 0.07 1.47 6.34 -52.49 -0.33 1.13 16 7 C 0.07 1.73 5.46 -17.81 -0.10 1.63 16 8 N -0.88 -24.40 13.29 55.43 0.74 -23.66 16 9 Si 0.89 19.10 29.54 -169.99 -5.02 14.08 16 10 H -0.27 -5.77 7.11 56.52 0.40 -5.36 16 11 H -0.29 -6.34 7.11 56.52 0.40 -5.94 16 12 H -0.27 -5.45 6.53 56.52 0.37 -5.08 16 13 S 2.78 58.32 5.96 -107.50 -0.64 57.68 16 14 O -1.00 -21.47 17.04 -57.17 -0.97 -22.44 16 15 O -0.96 -24.29 15.56 -60.70 -0.94 -25.23 16 16 N -1.11 -19.19 5.23 -6.07 -0.03 -19.22 16 17 C 0.14 2.42 2.61 -69.30 -0.18 2.24 16 18 H 0.15 3.20 5.07 -51.93 -0.26 2.94 16 19 C -0.12 -1.62 5.50 -26.52 -0.15 -1.77 16 20 C -0.14 -1.67 6.02 -26.60 -0.16 -1.83 16 21 C 0.12 1.25 6.41 -4.48 -0.03 1.22 16 22 N -0.61 -8.86 3.21 -182.84 -0.59 -9.44 16 23 C 0.07 0.88 10.47 59.85 0.63 1.50 16 24 C 0.50 9.25 7.20 -11.87 -0.09 9.17 16 25 O -0.52 -11.74 14.92 1.97 0.03 -11.71 16 26 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 27 H 0.06 0.98 7.81 -51.93 -0.41 0.58 16 28 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 29 H 0.08 1.32 8.10 -51.93 -0.42 0.90 16 30 H 0.06 0.88 7.83 -51.93 -0.41 0.47 16 31 H 0.04 0.98 8.11 -51.93 -0.42 0.56 16 32 H 0.05 1.44 6.87 -51.93 -0.36 1.08 16 33 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 34 H 0.41 5.71 8.90 -34.47 -0.31 5.41 16 35 H 0.07 0.75 8.13 -51.93 -0.42 0.33 16 36 H 0.09 1.15 7.62 -51.93 -0.40 0.76 16 37 H 0.09 0.78 8.14 -51.93 -0.42 0.36 16 38 H 0.08 1.20 7.55 -51.93 -0.39 0.81 16 39 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 40 H 0.07 0.66 8.10 -51.93 -0.42 0.24 16 41 H 0.09 1.35 6.59 -51.93 -0.34 1.01 16 42 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 43 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 LS Contribution 355.29 15.07 5.35 5.35 Total: -1.00 -33.79 355.29 -9.00 -42.79 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: -6.59 Total: 8.14 kcal Atomic # 6 Polarization: 4.23 SS G_CDS: 0.00 Total: 4.23 kcal Atomic # 7 Polarization: -72.69 SS G_CDS: -0.21 Total: -72.90 kcal Atomic # 8 Polarization: -57.49 SS G_CDS: -1.89 Total: -59.38 kcal Atomic # 14 Polarization: 19.10 SS G_CDS: -5.02 Total: 14.08 kcal Atomic # 16 Polarization: 58.32 SS G_CDS: -0.64 Total: 57.68 kcal Total LS contribution 5.35 Total: 5.35 kcal Total: -33.79 -9.00 -42.79 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.815 kcal (2) G-P(sol) polarization free energy of solvation -33.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.605 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds