Wall clock time and date at job start Fri Apr 10 2020 18:18:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46506 * 109.47010 * 2 1 4 4 C 1.46497 * 120.00238 * 273.74994 * 3 2 1 5 5 C 1.50697 * 109.47038 * 275.00112 * 4 3 2 6 6 H 1.07996 * 120.00542 * 359.97438 * 5 4 3 7 7 C 1.37879 * 119.99926 * 179.97438 * 5 4 3 8 8 N 1.31525 * 119.99902 * 359.97438 * 7 5 4 9 9 Si 1.86797 * 120.00109 * 180.02562 * 7 5 4 10 10 H 1.48502 * 109.47152 * 60.00018 * 9 7 5 11 11 H 1.48506 * 109.47070 * 179.97438 * 9 7 5 12 12 H 1.48497 * 109.46877 * 299.99918 * 9 7 5 13 13 S 1.65604 * 119.99834 * 93.75069 * 3 2 1 14 14 O 1.42104 * 106.40036 * 329.97583 * 13 3 2 15 15 O 1.42093 * 106.40100 * 197.05917 * 13 3 2 16 16 N 1.65597 * 107.21932 * 83.51464 * 13 3 2 17 17 C 1.46506 * 119.99713 * 67.34950 * 16 13 3 18 18 H 1.09000 * 109.39968 * 341.42412 * 17 16 13 19 19 C 1.53067 * 109.33272 * 221.63581 * 17 16 13 20 20 C 1.53344 * 108.42653 * 191.01606 * 19 17 16 21 21 C 1.52913 * 108.67527 * 67.53207 * 20 19 17 22 22 N 1.45778 * 110.42075 * 309.03074 * 21 20 19 23 23 C 1.46506 * 117.96108 * 199.30802 * 22 21 20 24 24 C 1.33352 * 124.09162 * 19.57636 * 22 21 20 25 25 O 1.21286 * 118.24591 * 177.48372 * 24 22 21 26 26 H 1.08997 * 109.46588 * 185.04887 * 1 2 3 27 27 H 1.08993 * 109.47095 * 305.04671 * 1 2 3 28 28 H 1.09000 * 109.46992 * 65.04535 * 1 2 3 29 29 H 1.08996 * 109.47282 * 240.00557 * 2 1 3 30 30 H 1.09004 * 109.47438 * 120.00002 * 2 1 3 31 31 H 1.09004 * 109.46887 * 34.99747 * 4 3 2 32 32 H 1.08998 * 109.46940 * 154.99477 * 4 3 2 33 33 H 0.96995 * 119.99709 * 179.97438 * 8 7 5 34 34 H 0.96996 * 120.00578 * 247.35534 * 16 13 3 35 35 H 1.09002 * 109.67314 * 310.75390 * 19 17 16 36 36 H 1.08999 * 109.67174 * 71.28128 * 19 17 16 37 37 H 1.08996 * 109.60315 * 187.28919 * 20 19 17 38 38 H 1.09004 * 109.60411 * 307.77390 * 20 19 17 39 39 H 1.09005 * 109.30376 * 69.55612 * 21 20 19 40 40 H 1.09003 * 109.30481 * 189.14191 * 21 20 19 41 41 H 1.08994 * 109.46962 * 180.25264 * 23 22 21 42 42 H 1.08996 * 109.46960 * 300.25030 * 23 22 21 43 43 H 1.08996 * 109.46858 * 60.25305 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1843 2.0996 -1.2660 5 6 3.5332 1.7753 -1.8544 6 1 4.2004 1.1019 -1.3370 7 6 3.9157 2.3384 -3.0534 8 7 3.1030 3.1581 -3.6839 9 14 5.5874 1.9360 -3.7832 10 1 5.6822 0.4742 -4.0270 11 1 5.7551 2.6633 -5.0671 12 1 6.6536 2.3501 -2.8362 13 16 2.3828 2.1306 1.4311 14 8 1.5250 1.5625 2.4113 15 8 2.4309 3.5234 1.1539 16 7 3.9232 1.6819 1.8411 17 6 5.0572 2.1296 1.0287 18 1 4.6980 2.4495 0.0506 19 6 6.0439 0.9724 0.8545 20 6 7.3385 1.5265 0.2476 21 6 8.0117 2.4356 1.2766 22 7 7.0610 3.4143 1.7898 23 6 7.5939 4.6160 2.4365 24 6 5.7364 3.2816 1.7120 25 8 5.0430 4.1397 2.2159 26 1 -0.3632 -1.0237 0.0904 27 1 -0.3633 0.5901 0.8413 28 1 -0.3633 0.4336 -0.9317 29 1 1.8934 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 1.4019 1.7956 -1.9614 32 1 2.1143 3.1725 -1.0868 33 1 3.3722 3.5545 -4.5272 34 1 4.0747 1.1226 2.6190 35 1 6.2564 0.5222 1.8242 36 1 5.6170 0.2235 0.1874 37 1 8.0061 0.7026 -0.0046 38 1 7.1057 2.0996 -0.6499 39 1 8.3904 1.8296 2.0997 40 1 8.8418 2.9612 0.8046 41 1 6.7688 5.2455 2.7696 42 1 8.2007 4.3279 3.2949 43 1 8.2086 5.1686 1.7260 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337056125.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:25 Heat of formation + Delta-G solvation = -135.492426 kcal Electronic energy + Delta-G solvation = -27587.119629 eV Core-core repulsion = 23793.083551 eV Total energy + Delta-G solvation = -3794.036078 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.54967 -38.28273 -37.74180 -37.46965 -36.83026 -36.63511 -34.65814 -33.20924 -31.52194 -29.42544 -28.45495 -28.00716 -24.94291 -24.74417 -23.31395 -23.19820 -20.58672 -19.84889 -18.66382 -18.65585 -18.24810 -17.83859 -17.52853 -17.16491 -16.92240 -16.30097 -15.78191 -15.30785 -15.15012 -15.00679 -14.71101 -14.59302 -14.34906 -13.79297 -13.67163 -13.57510 -13.42513 -13.34565 -13.16858 -13.06681 -12.96922 -12.86771 -12.69361 -12.62667 -12.39705 -12.24227 -12.13203 -12.08307 -11.74808 -11.65287 -11.54153 -11.30817 -10.51520 -10.23254 -9.78697 -9.66519 -8.12467 -6.27119 -0.32356 1.46164 1.50223 1.55059 1.57196 2.00213 2.13181 2.46750 2.65352 3.18716 3.47911 3.57003 3.74685 3.86800 3.94758 4.03341 4.27980 4.44187 4.47472 4.48447 4.54014 4.57362 4.69180 4.71712 4.74439 4.94575 4.96819 5.00537 5.05894 5.14914 5.17326 5.30960 5.37090 5.43165 5.51520 5.55370 5.79308 5.90319 6.12042 6.14037 6.43897 6.84481 7.17672 7.42593 8.95736 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.010264 B = 0.008092 C = 0.005422 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2727.313398 B = 3459.388805 C = 5162.707603 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.121 3.879 3 N -0.993 5.993 4 C 0.257 3.743 5 C -0.542 4.542 6 H 0.089 0.911 7 C 0.008 3.992 8 N -0.931 5.931 9 Si 0.951 3.049 10 H -0.257 1.257 11 H -0.299 1.299 12 H -0.246 1.246 13 S 2.793 3.207 14 O -1.007 7.007 15 O -1.008 7.008 16 N -1.095 6.095 17 C 0.133 3.867 18 H 0.117 0.883 19 C -0.119 4.119 20 C -0.143 4.143 21 C 0.109 3.891 22 N -0.607 5.607 23 C 0.066 3.934 24 C 0.489 3.511 25 O -0.580 6.580 26 H 0.093 0.907 27 H 0.042 0.958 28 H 0.047 0.953 29 H 0.088 0.912 30 H 0.088 0.912 31 H 0.022 0.978 32 H 0.008 0.992 33 H 0.263 0.737 34 H 0.423 0.577 35 H 0.101 0.899 36 H 0.093 0.907 37 H 0.127 0.873 38 H 0.054 0.946 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.059 0.941 42 H 0.088 0.912 43 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.824 -9.631 8.667 18.230 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.004 4.004 3 N -0.834 5.834 4 C 0.133 3.867 5 C -0.581 4.581 6 H 0.107 0.893 7 C -0.192 4.192 8 N -0.570 5.570 9 Si 0.774 3.226 10 H -0.181 1.181 11 H -0.225 1.225 12 H -0.170 1.170 13 S 2.801 3.199 14 O -0.991 6.991 15 O -0.991 6.991 16 N -0.855 5.855 17 C 0.022 3.978 18 H 0.134 0.866 19 C -0.158 4.158 20 C -0.181 4.181 21 C -0.012 4.012 22 N -0.341 5.341 23 C -0.076 4.076 24 C 0.275 3.725 25 O -0.460 6.460 26 H 0.111 0.889 27 H 0.061 0.939 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.106 0.894 31 H 0.040 0.960 32 H 0.026 0.974 33 H 0.072 0.928 34 H 0.259 0.741 35 H 0.119 0.881 36 H 0.111 0.889 37 H 0.145 0.855 38 H 0.073 0.927 39 H 0.116 0.884 40 H 0.115 0.885 41 H 0.078 0.922 42 H 0.106 0.894 43 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges 11.821 -8.397 9.113 17.126 hybrid contribution 0.375 0.220 -0.696 0.821 sum 12.197 -8.178 8.417 16.926 Atomic orbital electron populations 1.22225 0.96294 1.03204 1.01207 1.21301 0.94381 0.80992 1.03688 1.57651 1.79342 1.24361 1.22083 1.18781 0.97136 0.90677 0.80078 1.21874 1.01914 1.28170 1.06164 0.89335 1.25936 1.01286 0.94516 0.97419 1.70102 1.38526 1.31459 1.16954 0.85727 0.80045 0.79105 0.77678 1.18090 1.22541 1.16998 1.01404 0.73132 0.72839 0.72543 1.93518 1.64974 1.80080 1.60548 1.93578 1.86769 1.33546 1.85255 1.55484 1.22564 1.67202 1.40258 1.20980 0.88173 0.94019 0.94648 0.86576 1.22016 0.93901 0.95890 1.03989 1.22041 0.97114 1.00914 0.98023 1.21763 0.91063 0.90416 0.97955 1.47463 1.05095 1.23321 1.58203 1.21860 0.99602 0.87438 0.98712 1.21107 0.83148 0.88246 0.80005 1.90714 1.63573 1.43179 1.48491 0.88860 0.93910 0.93404 0.89335 0.89393 0.95989 0.97361 0.92832 0.74107 0.88076 0.88892 0.85488 0.92671 0.88446 0.88506 0.92245 0.89370 0.90543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.27 10.24 71.98 0.74 -4.53 16 2 C 0.12 3.97 6.04 86.38 0.52 4.49 16 3 N -0.99 -41.17 2.82 -519.83 -1.47 -42.64 16 4 C 0.26 13.02 5.40 85.63 0.46 13.48 16 5 C -0.54 -26.77 7.43 25.60 0.19 -26.58 16 6 H 0.09 3.85 6.34 -2.91 -0.02 3.83 16 7 C 0.01 0.41 5.46 84.65 0.46 0.87 16 8 N -0.93 -53.68 13.29 21.45 0.28 -53.40 16 9 Si 0.95 38.59 29.54 68.60 2.03 40.62 16 10 H -0.26 -9.63 7.11 99.48 0.71 -8.93 16 11 H -0.30 -12.70 7.11 99.48 0.71 -11.99 16 12 H -0.25 -8.91 6.53 99.48 0.65 -8.26 16 13 S 2.79 120.02 5.96 -56.49 -0.34 119.68 16 14 O -1.01 -43.33 17.04 -128.00 -2.18 -45.51 16 15 O -1.01 -54.43 15.56 -124.63 -1.94 -56.37 16 16 N -1.09 -37.20 5.23 -173.11 -0.90 -38.10 16 17 C 0.13 4.54 2.61 44.10 0.12 4.65 16 18 H 0.12 4.92 5.07 -2.39 -0.01 4.91 16 19 C -0.12 -2.64 5.50 30.73 0.17 -2.47 16 20 C -0.14 -2.68 6.02 30.68 0.18 -2.50 16 21 C 0.11 1.80 6.41 86.49 0.55 2.35 16 22 N -0.61 -16.09 3.21 -851.56 -2.73 -18.82 16 23 C 0.07 1.51 10.47 127.77 1.34 2.85 16 24 C 0.49 17.90 7.20 87.71 0.63 18.53 16 25 O -0.58 -27.04 14.92 0.38 0.01 -27.03 16 26 H 0.09 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.04 1.44 7.81 -2.39 -0.02 1.42 16 28 H 0.05 1.57 8.14 -2.39 -0.02 1.55 16 29 H 0.09 2.77 8.10 -2.39 -0.02 2.75 16 30 H 0.09 2.38 7.83 -2.38 -0.02 2.36 16 31 H 0.02 1.17 8.11 -2.38 -0.02 1.15 16 32 H 0.01 0.49 6.87 -2.39 -0.02 0.48 16 33 H 0.26 14.48 8.31 -92.71 -0.77 13.71 16 34 H 0.42 11.15 8.90 -96.75 -0.86 10.29 16 35 H 0.10 1.64 8.13 -2.39 -0.02 1.62 16 36 H 0.09 2.02 7.62 -2.39 -0.02 2.00 16 37 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.05 1.38 7.55 -2.38 -0.02 1.36 16 39 H 0.10 1.04 8.14 -2.38 -0.02 1.02 16 40 H 0.10 1.21 8.10 -2.39 -0.02 1.19 16 41 H 0.06 1.77 6.59 -2.39 -0.02 1.76 16 42 H 0.09 1.42 8.14 -2.39 -0.02 1.41 16 43 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 Total: -1.00 -80.02 355.29 -1.78 -81.80 By element: Atomic # 1 Polarization: 28.52 SS G_CDS: 0.10 Total: 28.63 kcal Atomic # 6 Polarization: 5.78 SS G_CDS: 5.37 Total: 11.15 kcal Atomic # 7 Polarization: -148.13 SS G_CDS: -4.82 Total: -152.95 kcal Atomic # 8 Polarization: -124.80 SS G_CDS: -4.12 Total: -128.91 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.62 kcal Atomic # 16 Polarization: 120.02 SS G_CDS: -0.34 Total: 119.68 kcal Total: -80.02 -1.78 -81.80 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337056125.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.693 kcal (2) G-P(sol) polarization free energy of solvation -80.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.779 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.492 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds