Wall clock time and date at job start Fri Apr 10 2020 18:18:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47552 * 2 1 4 4 C 1.46496 * 119.99783 * 274.99842 * 3 2 1 5 5 C 1.50694 * 109.47440 * 279.26337 * 4 3 2 6 6 H 1.08005 * 120.00084 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00446 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00549 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99567 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47249 * 90.00289 * 9 7 5 11 11 H 1.48504 * 109.47108 * 209.99823 * 9 7 5 12 12 H 1.48494 * 109.47428 * 329.99943 * 9 7 5 13 13 S 1.65592 * 120.00039 * 94.99489 * 3 2 1 14 14 O 1.42104 * 106.40137 * 173.08049 * 13 3 2 15 15 O 1.42100 * 106.40704 * 40.15894 * 13 3 2 16 16 N 1.65601 * 107.22039 * 286.61777 * 13 3 2 17 17 C 1.47050 * 121.34904 * 98.85930 * 16 13 3 18 18 C 1.50448 * 108.98442 * 222.69777 * 17 16 13 19 19 O 1.21284 * 118.48605 * 167.35395 * 18 17 16 20 20 N 1.33564 * 122.88679 * 347.46681 * 18 17 16 21 21 C 1.45645 * 124.65027 * 4.11488 * 20 18 17 22 22 C 1.47266 * 121.35568 * 278.88243 * 16 13 3 23 23 C 1.52998 * 109.71880 * 238.14730 * 22 16 13 24 24 C 1.52995 * 109.71752 * 358.79969 * 22 16 13 25 25 H 1.08997 * 109.47219 * 300.00576 * 1 2 3 26 26 H 1.09000 * 109.46856 * 60.00288 * 1 2 3 27 27 H 1.09004 * 109.47449 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47686 * 239.99620 * 2 1 3 29 29 H 1.09005 * 109.47454 * 120.00104 * 2 1 3 30 30 H 1.09003 * 109.47112 * 39.26672 * 4 3 2 31 31 H 1.09000 * 109.47034 * 159.26010 * 4 3 2 32 32 H 0.96994 * 120.00602 * 180.02562 * 8 7 5 33 33 H 1.08992 * 109.57441 * 342.58059 * 17 16 13 34 34 H 1.09001 * 109.56934 * 102.82602 * 17 16 13 35 35 H 0.97003 * 117.63909 * 184.23547 * 20 18 17 36 36 H 1.08993 * 109.21549 * 217.86725 * 21 20 18 37 37 H 1.08998 * 109.18121 * 98.51062 * 21 20 18 38 38 H 1.09003 * 109.47189 * 60.00111 * 23 22 16 39 39 H 1.08999 * 109.47172 * 179.97438 * 23 22 16 40 40 H 1.08996 * 109.47539 * 299.99946 * 23 22 16 41 41 H 1.09001 * 109.47579 * 54.41778 * 24 22 16 42 42 H 1.09007 * 109.46982 * 174.41956 * 24 22 16 43 43 H 1.09007 * 109.47370 * 294.41432 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4479 1.7089 -1.9334 6 1 4.0980 0.9850 -1.4646 7 6 3.7978 2.2672 -3.1445 8 7 4.9230 1.9180 -3.7291 9 14 2.6730 3.5187 -3.9558 10 1 3.0420 4.8835 -3.5018 11 1 2.8183 3.4317 -5.4312 12 1 1.2647 3.2357 -3.5796 13 16 2.4121 2.1202 1.4286 14 8 2.9970 3.3692 1.0864 15 8 3.0752 1.1416 2.2173 16 7 0.9931 2.4665 2.2089 17 6 0.4758 1.5983 3.2771 18 6 -1.0072 1.4254 3.0923 19 8 -1.5731 0.5633 3.7306 20 7 -1.7263 2.1778 2.2551 21 6 -1.1708 3.1866 1.3635 22 6 0.1977 3.6560 1.8608 23 6 0.0224 4.5397 3.0974 24 6 0.9051 4.4451 0.7574 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.3197 1.8669 -1.9170 31 1 2.1682 3.1806 -1.0670 32 1 5.1693 2.3111 -4.5809 33 1 0.9658 0.6260 3.2269 34 1 0.6718 2.0562 4.2467 35 1 -2.6869 2.0436 2.2416 36 1 -1.8484 4.0392 1.3199 37 1 -1.0636 2.7623 0.3652 38 1 1.0007 4.8534 3.4615 39 1 -0.5663 5.4188 2.8352 40 1 -0.4918 3.9768 3.8763 41 1 1.1064 3.7872 -0.0881 42 1 0.2679 5.2682 0.4337 43 1 1.8452 4.8425 1.1404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337076850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:28 Heat of formation + Delta-G solvation = -85.027018 kcal Electronic energy + Delta-G solvation = -28221.816239 eV Core-core repulsion = 24429.968505 eV Total energy + Delta-G solvation = -3791.847733 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.62620 -38.02592 -36.89192 -36.30894 -35.40414 -34.25532 -32.71252 -32.48403 -30.34919 -28.04724 -27.28555 -26.59601 -26.25805 -23.03428 -22.19077 -21.65736 -19.50612 -18.13698 -17.68529 -17.46624 -17.00673 -16.88081 -16.31720 -15.85597 -15.56087 -15.12652 -14.52405 -14.32253 -14.10290 -13.84229 -13.52773 -13.36349 -12.89054 -12.76883 -12.70718 -12.56014 -12.49197 -12.35245 -12.13776 -11.89422 -11.74674 -11.57446 -11.51806 -11.27641 -11.17128 -10.99658 -10.61629 -10.53970 -10.33597 -10.28102 -10.13131 -9.59152 -9.34348 -9.07978 -8.65532 -8.22246 -6.15222 -4.15509 0.88973 2.40726 2.92862 3.19019 3.22741 3.25452 3.29874 3.82106 4.23545 4.31448 4.40221 4.50772 4.69122 4.84389 4.93178 5.13602 5.16081 5.25405 5.27771 5.31371 5.40423 5.54992 5.56478 5.59224 5.62500 5.79645 5.81467 5.85671 6.02598 6.17317 6.28202 6.41107 6.47351 6.52572 6.62093 6.72092 7.03332 7.07073 7.30674 7.52080 7.98367 8.41671 8.89884 9.43400 10.98052 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.005781 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.667209 B = 4841.984312 C = 5034.293590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.119 3.881 3 N -0.983 5.983 4 C 0.218 3.782 5 C -0.537 4.537 6 H 0.079 0.921 7 C 0.075 3.925 8 N -0.893 5.893 9 Si 0.870 3.130 10 H -0.271 1.271 11 H -0.284 1.284 12 H -0.264 1.264 13 S 2.781 3.219 14 O -0.959 6.959 15 O -0.985 6.985 16 N -1.009 6.009 17 C 0.110 3.890 18 C 0.519 3.481 19 O -0.553 6.553 20 N -0.711 5.711 21 C 0.103 3.897 22 C 0.169 3.831 23 C -0.152 4.152 24 C -0.199 4.199 25 H 0.048 0.952 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.091 0.909 29 H 0.072 0.928 30 H 0.031 0.969 31 H 0.048 0.952 32 H 0.266 0.734 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.398 0.602 36 H 0.087 0.913 37 H 0.077 0.923 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.078 0.922 42 H 0.074 0.926 43 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.650 4.549 10.442 18.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.007 4.007 3 N -0.824 5.824 4 C 0.095 3.905 5 C -0.576 4.576 6 H 0.097 0.903 7 C -0.128 4.128 8 N -0.531 5.531 9 Si 0.697 3.303 10 H -0.196 1.196 11 H -0.210 1.210 12 H -0.189 1.189 13 S 2.792 3.208 14 O -0.943 6.943 15 O -0.969 6.969 16 N -0.848 5.848 17 C -0.019 4.019 18 C 0.304 3.696 19 O -0.430 6.430 20 N -0.363 5.363 21 C -0.023 4.023 22 C 0.081 3.919 23 C -0.211 4.211 24 C -0.257 4.257 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.049 0.951 31 H 0.065 0.935 32 H 0.076 0.924 33 H 0.141 0.859 34 H 0.121 0.879 35 H 0.234 0.766 36 H 0.105 0.895 37 H 0.095 0.905 38 H 0.088 0.912 39 H 0.089 0.911 40 H 0.076 0.924 41 H 0.096 0.904 42 H 0.093 0.907 43 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -13.657 4.338 10.922 18.017 hybrid contribution -1.258 0.540 -0.861 1.618 sum -14.915 4.878 10.061 18.641 Atomic orbital electron populations 1.22326 0.97158 1.01793 1.01926 1.21145 0.92821 0.82823 1.03947 1.57485 1.81109 1.21594 1.22202 1.19646 0.98176 0.91965 0.80719 1.21376 1.04505 1.26429 1.05282 0.90338 1.24871 0.94980 0.96214 0.96782 1.69888 1.22490 1.43337 1.17385 0.86948 0.81615 0.82665 0.79096 1.19614 1.20976 1.18910 1.02134 0.72665 0.73475 0.72507 1.93607 1.75172 1.41976 1.83502 1.93548 1.71048 1.62033 1.70244 1.58999 1.43593 1.33176 1.49075 1.21491 0.90514 0.97126 0.92723 1.20322 0.90228 0.80335 0.78673 1.90788 1.71741 1.33304 1.47199 1.45302 1.11117 1.38892 1.40979 1.21905 0.95168 0.91498 0.93729 1.20615 0.89971 0.84805 0.96477 1.22115 1.03037 0.99153 0.96796 1.23064 1.03371 1.01414 0.97813 0.93251 0.92068 0.92014 0.89048 0.90987 0.95093 0.93500 0.92432 0.85945 0.87862 0.76629 0.89456 0.90515 0.91217 0.91056 0.92425 0.90367 0.90716 0.86465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.24 37.15 0.38 -1.92 16 2 C 0.12 1.95 6.38 -4.04 -0.03 1.93 16 3 N -0.98 -18.52 2.77 -115.67 -0.32 -18.84 16 4 C 0.22 4.74 3.57 -5.20 -0.02 4.72 16 5 C -0.54 -14.57 9.89 -34.44 -0.34 -14.91 16 6 H 0.08 2.36 8.06 -52.48 -0.42 1.94 16 7 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 8 N -0.89 -26.65 13.96 55.43 0.77 -25.87 16 9 Si 0.87 20.07 27.47 -169.99 -4.67 15.40 16 10 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 11 H -0.28 -6.55 7.11 56.52 0.40 -6.14 16 12 H -0.26 -5.56 6.54 56.52 0.37 -5.19 16 13 S 2.78 50.50 5.48 -107.50 -0.59 49.91 16 14 O -0.96 -19.53 12.43 -57.17 -0.71 -20.24 16 15 O -0.98 -20.04 15.85 -57.17 -0.91 -20.95 16 16 N -1.01 -13.37 3.01 -101.01 -0.30 -13.68 16 17 C 0.11 1.34 5.36 -5.02 -0.03 1.31 16 18 C 0.52 6.33 5.74 -11.65 -0.07 6.27 16 19 O -0.55 -8.53 17.81 5.55 0.10 -8.43 16 20 N -0.71 -6.72 4.92 -61.28 -0.30 -7.02 16 21 C 0.10 0.90 5.80 -4.51 -0.03 0.87 16 22 C 0.17 1.83 1.07 -131.41 -0.14 1.69 16 23 C -0.15 -1.33 8.33 37.16 0.31 -1.02 16 24 C -0.20 -2.50 6.87 37.16 0.26 -2.25 16 25 H 0.05 0.62 5.24 -51.93 -0.27 0.35 16 26 H 0.06 0.81 8.11 -51.93 -0.42 0.39 16 27 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.09 1.59 8.11 -51.93 -0.42 1.17 16 29 H 0.07 1.14 7.25 -51.93 -0.38 0.76 16 30 H 0.03 0.64 7.16 -51.93 -0.37 0.27 16 31 H 0.05 1.01 4.29 -51.93 -0.22 0.79 16 32 H 0.27 7.40 8.31 -40.82 -0.34 7.06 16 33 H 0.12 1.57 7.25 -51.93 -0.38 1.20 16 34 H 0.10 1.06 7.84 -51.93 -0.41 0.65 16 35 H 0.40 3.17 8.80 -40.82 -0.36 2.81 16 36 H 0.09 0.52 8.08 -51.93 -0.42 0.10 16 37 H 0.08 0.73 8.07 -51.93 -0.42 0.31 16 38 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 39 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.49 6.82 -51.93 -0.35 0.13 16 41 H 0.08 1.17 3.69 -51.93 -0.19 0.98 16 42 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 43 H 0.12 1.72 5.99 -51.93 -0.31 1.41 16 LS Contribution 338.80 15.07 5.11 5.11 Total: -1.00 -34.00 338.80 -7.83 -41.83 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.20 Total: 4.09 kcal Atomic # 6 Polarization: -1.53 SS G_CDS: 0.20 Total: -1.32 kcal Atomic # 7 Polarization: -65.25 SS G_CDS: -0.15 Total: -65.40 kcal Atomic # 8 Polarization: -48.10 SS G_CDS: -1.52 Total: -49.62 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -4.67 Total: 15.40 kcal Atomic # 16 Polarization: 50.50 SS G_CDS: -0.59 Total: 49.91 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -34.00 -7.83 -41.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337076850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.197 kcal (2) G-P(sol) polarization free energy of solvation -34.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.830 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.027 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds