Wall clock time and date at job start Fri Apr 10 2020 18:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46501 * 109.47552 * 2 1 4 4 C 1.46496 * 119.99783 * 274.99842 * 3 2 1 5 5 C 1.50694 * 109.47440 * 279.26337 * 4 3 2 6 6 H 1.08005 * 120.00084 * 0.02562 * 5 4 3 7 7 C 1.37876 * 120.00446 * 180.02562 * 5 4 3 8 8 N 1.31512 * 120.00549 * 180.02562 * 7 5 4 9 9 Si 1.86805 * 119.99567 * 359.97438 * 7 5 4 10 10 H 1.48495 * 109.47249 * 90.00289 * 9 7 5 11 11 H 1.48504 * 109.47108 * 209.99823 * 9 7 5 12 12 H 1.48494 * 109.47428 * 329.99943 * 9 7 5 13 13 S 1.65592 * 120.00039 * 94.99489 * 3 2 1 14 14 O 1.42104 * 106.40137 * 173.08049 * 13 3 2 15 15 O 1.42100 * 106.40704 * 40.15894 * 13 3 2 16 16 N 1.65601 * 107.22039 * 286.61777 * 13 3 2 17 17 C 1.47050 * 121.34904 * 98.85930 * 16 13 3 18 18 C 1.50448 * 108.98442 * 222.69777 * 17 16 13 19 19 O 1.21284 * 118.48605 * 167.35395 * 18 17 16 20 20 N 1.33564 * 122.88679 * 347.46681 * 18 17 16 21 21 C 1.45645 * 124.65027 * 4.11488 * 20 18 17 22 22 C 1.47266 * 121.35568 * 278.88243 * 16 13 3 23 23 C 1.52998 * 109.71880 * 238.14730 * 22 16 13 24 24 C 1.52995 * 109.71752 * 358.79969 * 22 16 13 25 25 H 1.08997 * 109.47219 * 300.00576 * 1 2 3 26 26 H 1.09000 * 109.46856 * 60.00288 * 1 2 3 27 27 H 1.09004 * 109.47449 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47686 * 239.99620 * 2 1 3 29 29 H 1.09005 * 109.47454 * 120.00104 * 2 1 3 30 30 H 1.09003 * 109.47112 * 39.26672 * 4 3 2 31 31 H 1.09000 * 109.47034 * 159.26010 * 4 3 2 32 32 H 0.96994 * 120.00602 * 180.02562 * 8 7 5 33 33 H 1.08992 * 109.57441 * 342.58059 * 17 16 13 34 34 H 1.09001 * 109.56934 * 102.82602 * 17 16 13 35 35 H 0.97003 * 117.63909 * 184.23547 * 20 18 17 36 36 H 1.08993 * 109.21549 * 217.86725 * 21 20 18 37 37 H 1.08998 * 109.18121 * 98.51062 * 21 20 18 38 38 H 1.09003 * 109.47189 * 60.00111 * 23 22 16 39 39 H 1.08999 * 109.47172 * 179.97438 * 23 22 16 40 40 H 1.08996 * 109.47539 * 299.99946 * 23 22 16 41 41 H 1.09001 * 109.47579 * 54.41778 * 24 22 16 42 42 H 1.09007 * 109.46982 * 174.41956 * 24 22 16 43 43 H 1.09007 * 109.47370 * 294.41432 * 24 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.4479 1.7089 -1.9334 6 1 4.0980 0.9850 -1.4646 7 6 3.7978 2.2672 -3.1445 8 7 4.9230 1.9180 -3.7291 9 14 2.6730 3.5187 -3.9558 10 1 3.0420 4.8835 -3.5018 11 1 2.8183 3.4317 -5.4312 12 1 1.2647 3.2357 -3.5796 13 16 2.4121 2.1202 1.4286 14 8 2.9970 3.3692 1.0864 15 8 3.0752 1.1416 2.2173 16 7 0.9931 2.4665 2.2089 17 6 0.4758 1.5983 3.2771 18 6 -1.0072 1.4254 3.0923 19 8 -1.5731 0.5633 3.7306 20 7 -1.7263 2.1778 2.2551 21 6 -1.1708 3.1866 1.3635 22 6 0.1977 3.6560 1.8608 23 6 0.0224 4.5397 3.0974 24 6 0.9051 4.4451 0.7574 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 1.3197 1.8669 -1.9170 31 1 2.1682 3.1806 -1.0670 32 1 5.1693 2.3111 -4.5809 33 1 0.9658 0.6260 3.2269 34 1 0.6718 2.0562 4.2467 35 1 -2.6869 2.0436 2.2416 36 1 -1.8484 4.0392 1.3199 37 1 -1.0636 2.7623 0.3652 38 1 1.0007 4.8534 3.4615 39 1 -0.5663 5.4188 2.8352 40 1 -0.4918 3.9768 3.8763 41 1 1.1064 3.7872 -0.0881 42 1 0.2679 5.2682 0.4337 43 1 1.8452 4.8425 1.1404 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337076850.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:27 Heat of formation + Delta-G solvation = -113.160151 kcal Electronic energy + Delta-G solvation = -28223.036183 eV Core-core repulsion = 24429.968505 eV Total energy + Delta-G solvation = -3793.067678 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.54492 -39.11959 -38.28616 -37.81326 -36.93377 -35.15338 -34.68490 -33.50817 -31.84403 -29.03252 -28.84787 -27.59671 -27.05432 -24.64574 -23.21698 -23.10700 -20.65334 -19.42015 -19.00729 -18.87737 -18.47172 -18.10446 -17.41788 -17.07102 -16.71704 -16.25632 -16.06020 -15.64374 -15.30530 -14.82804 -14.76619 -14.55695 -14.39884 -14.17086 -13.83826 -13.75272 -13.70323 -13.54594 -13.39004 -13.11687 -13.00350 -12.81165 -12.75918 -12.67277 -12.45049 -12.27713 -12.11688 -11.87764 -11.81099 -11.61191 -11.56241 -11.24888 -10.74977 -10.22835 -10.00972 -9.80710 -8.27906 -6.34486 -0.51687 1.38690 1.43329 1.46342 1.51242 1.82104 2.21289 2.37303 2.48537 3.06426 3.24794 3.31712 3.55225 3.77095 3.89002 3.95845 4.02328 4.30437 4.34784 4.37921 4.49204 4.52879 4.59292 4.67664 4.73360 4.81451 4.86413 4.95231 4.96275 5.02998 5.03654 5.32164 5.33401 5.38409 5.43002 5.49299 5.62077 5.77836 5.86910 6.21233 6.31378 6.69841 7.12313 7.29127 8.89484 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.017902 B = 0.005781 C = 0.005561 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1563.667209 B = 4841.984312 C = 5034.293590 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.113 3.887 3 N -0.990 5.990 4 C 0.229 3.771 5 C -0.547 4.547 6 H 0.025 0.975 7 C 0.007 3.993 8 N -0.950 5.950 9 Si 0.941 3.059 10 H -0.264 1.264 11 H -0.284 1.284 12 H -0.222 1.222 13 S 2.790 3.210 14 O -0.986 6.986 15 O -1.017 7.017 16 N -0.998 5.998 17 C 0.105 3.895 18 C 0.524 3.476 19 O -0.587 6.587 20 N -0.696 5.696 21 C 0.103 3.897 22 C 0.162 3.838 23 C -0.149 4.149 24 C -0.201 4.201 25 H 0.056 0.944 26 H 0.067 0.933 27 H 0.078 0.922 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.052 0.948 31 H 0.058 0.942 32 H 0.267 0.733 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.411 0.589 36 H 0.131 0.869 37 H 0.077 0.923 38 H 0.058 0.942 39 H 0.101 0.899 40 H 0.062 0.938 41 H 0.054 0.946 42 H 0.112 0.888 43 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.767 6.674 10.671 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.013 4.013 3 N -0.830 5.830 4 C 0.105 3.895 5 C -0.586 4.586 6 H 0.043 0.957 7 C -0.190 4.190 8 N -0.590 5.590 9 Si 0.762 3.238 10 H -0.189 1.189 11 H -0.210 1.210 12 H -0.145 1.145 13 S 2.802 3.198 14 O -0.969 6.969 15 O -1.001 7.001 16 N -0.840 5.840 17 C -0.023 4.023 18 C 0.310 3.690 19 O -0.468 6.468 20 N -0.346 5.346 21 C -0.022 4.022 22 C 0.075 3.925 23 C -0.207 4.207 24 C -0.259 4.259 25 H 0.075 0.925 26 H 0.086 0.914 27 H 0.096 0.904 28 H 0.091 0.909 29 H 0.089 0.911 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.076 0.924 33 H 0.129 0.871 34 H 0.142 0.858 35 H 0.248 0.752 36 H 0.149 0.851 37 H 0.095 0.905 38 H 0.077 0.923 39 H 0.119 0.881 40 H 0.081 0.919 41 H 0.073 0.927 42 H 0.131 0.869 43 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -17.800 6.459 11.154 21.976 hybrid contribution 0.106 -0.152 -0.850 0.870 sum -17.693 6.306 10.304 21.424 Atomic orbital electron populations 1.22209 0.94052 1.03127 1.02512 1.21277 0.95327 0.81642 1.03048 1.57439 1.81604 1.22470 1.21507 1.19412 0.95676 0.92708 0.81742 1.21733 1.06146 1.25134 1.05636 0.95656 1.25958 0.96779 0.98765 0.97534 1.70078 1.25225 1.45516 1.18168 0.85826 0.81281 0.79194 0.77501 1.18934 1.20986 1.14473 1.01596 0.73373 0.72569 0.72253 1.93593 1.76663 1.42760 1.83927 1.93496 1.72750 1.63042 1.70831 1.58559 1.42645 1.34202 1.48576 1.21635 0.90861 0.96695 0.93149 1.20131 0.89834 0.80201 0.78846 1.90785 1.72127 1.34957 1.48937 1.45189 1.11611 1.38051 1.39786 1.22054 0.94531 0.92645 0.93007 1.20951 0.90388 0.83905 0.97219 1.22120 1.03103 0.99787 0.95727 1.22996 1.03341 1.02241 0.97291 0.92513 0.91430 0.90362 0.90914 0.91100 0.92984 0.92455 0.92396 0.87052 0.85843 0.75209 0.85094 0.90510 0.92335 0.88077 0.91888 0.92714 0.86931 0.88985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.93 10.24 71.98 0.74 -3.19 16 2 C 0.11 3.73 6.38 86.38 0.55 4.28 16 3 N -0.99 -37.44 2.77 -519.87 -1.44 -38.88 16 4 C 0.23 9.82 3.57 85.63 0.31 10.12 16 5 C -0.55 -30.75 9.89 25.60 0.25 -30.50 16 6 H 0.03 1.63 8.06 -2.91 -0.02 1.61 16 7 C 0.01 0.42 5.47 84.65 0.46 0.88 16 8 N -0.95 -59.05 13.96 21.45 0.30 -58.76 16 9 Si 0.94 40.58 27.47 68.60 1.88 42.47 16 10 H -0.26 -11.10 7.11 99.48 0.71 -10.40 16 11 H -0.28 -12.20 7.11 99.48 0.71 -11.49 16 12 H -0.22 -8.04 6.54 99.48 0.65 -7.39 16 13 S 2.79 102.27 5.48 -56.49 -0.31 101.96 16 14 O -0.99 -40.75 12.43 -128.00 -1.59 -42.34 16 15 O -1.02 -42.87 15.85 -128.00 -2.03 -44.90 16 16 N -1.00 -24.82 3.01 -473.50 -1.43 -26.25 16 17 C 0.10 2.39 5.36 85.45 0.46 2.85 16 18 C 0.52 11.41 5.74 87.77 0.50 11.92 16 19 O -0.59 -16.98 17.81 -3.04 -0.05 -17.03 16 20 N -0.70 -10.26 4.92 -466.85 -2.30 -12.56 16 21 C 0.10 1.28 5.80 86.54 0.50 1.79 16 22 C 0.16 2.95 1.07 3.45 0.00 2.96 16 23 C -0.15 -2.02 8.33 71.98 0.60 -1.42 16 24 C -0.20 -4.44 6.87 71.98 0.49 -3.95 16 25 H 0.06 1.29 5.24 -2.39 -0.01 1.28 16 26 H 0.07 1.59 8.11 -2.39 -0.02 1.57 16 27 H 0.08 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.07 2.63 8.11 -2.39 -0.02 2.61 16 29 H 0.07 2.32 7.25 -2.38 -0.02 2.30 16 30 H 0.05 2.03 7.16 -2.39 -0.02 2.01 16 31 H 0.06 2.40 4.29 -2.39 -0.01 2.39 16 32 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 33 H 0.11 2.83 7.25 -2.39 -0.02 2.81 16 34 H 0.12 2.31 7.84 -2.39 -0.02 2.29 16 35 H 0.41 4.67 8.80 -92.71 -0.82 3.86 16 36 H 0.13 0.64 8.08 -2.39 -0.02 0.62 16 37 H 0.08 1.06 8.07 -2.39 -0.02 1.04 16 38 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 39 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.06 0.81 6.82 -2.39 -0.02 0.80 16 41 H 0.05 1.49 3.69 -2.39 -0.01 1.48 16 42 H 0.11 1.59 8.14 -2.38 -0.02 1.57 16 43 H 0.09 2.56 5.99 -2.38 -0.01 2.55 16 Total: -1.00 -79.08 338.80 -1.93 -81.01 By element: Atomic # 1 Polarization: 19.38 SS G_CDS: 0.17 Total: 19.55 kcal Atomic # 6 Polarization: -9.15 SS G_CDS: 4.87 Total: -4.28 kcal Atomic # 7 Polarization: -131.57 SS G_CDS: -4.87 Total: -136.44 kcal Atomic # 8 Polarization: -100.59 SS G_CDS: -3.67 Total: -104.27 kcal Atomic # 14 Polarization: 40.58 SS G_CDS: 1.88 Total: 42.47 kcal Atomic # 16 Polarization: 102.27 SS G_CDS: -0.31 Total: 101.96 kcal Total: -79.08 -1.93 -81.01 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337076850.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.148 kcal (2) G-P(sol) polarization free energy of solvation -79.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.232 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.012 kcal (6) G-S(sol) free energy of system = (1) + (5) -113.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds