Wall clock time and date at job start Fri Apr 10 2020 18:18:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46502 * 120.00701 * 275.00443 * 3 2 1 5 5 C 1.50696 * 109.47077 * 84.99501 * 4 3 2 6 6 H 1.08002 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99771 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00308 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47190 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47206 * 120.00148 * 9 7 5 12 12 H 1.48498 * 109.47353 * 240.00343 * 9 7 5 13 13 S 1.65603 * 119.99810 * 94.99963 * 3 2 1 14 14 O 1.42104 * 106.40314 * 203.53927 * 13 3 2 15 15 O 1.42100 * 106.40521 * 336.46437 * 13 3 2 16 16 N 1.65606 * 107.21868 * 90.00234 * 13 3 2 17 17 C 1.47260 * 121.35296 * 269.72163 * 16 13 3 18 18 C 1.53466 * 107.93955 * 118.51137 * 17 16 13 19 19 N 1.45644 * 110.73693 * 46.90985 * 18 17 16 20 20 C 1.46502 * 117.70412 * 157.96214 * 19 18 17 21 21 C 1.33379 * 124.59332 * 337.97925 * 19 18 17 22 22 O 1.21279 * 118.49273 * 184.29870 * 21 19 18 23 23 C 1.47047 * 121.35101 * 89.99677 * 16 13 3 24 24 H 1.08998 * 109.57453 * 342.54142 * 23 16 13 25 25 C 1.53001 * 109.56501 * 102.78070 * 23 16 13 26 26 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 31 31 H 1.08997 * 109.47560 * 204.99781 * 4 3 2 32 32 H 1.09000 * 109.46547 * 324.99874 * 4 3 2 33 33 H 0.96996 * 120.00037 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.71560 * 238.19266 * 17 16 13 35 35 H 1.08997 * 109.72221 * 358.83961 * 17 16 13 36 36 H 1.08999 * 109.32614 * 286.52471 * 18 17 16 37 37 H 1.08999 * 109.10303 * 167.15066 * 18 17 16 38 38 H 1.08998 * 109.47082 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.46896 * 300.01613 * 20 19 18 40 40 H 1.09000 * 109.47082 * 60.01850 * 20 19 18 41 41 H 1.08996 * 109.47700 * 59.99647 * 25 23 16 42 42 H 1.09006 * 109.47311 * 179.97438 * 25 23 16 43 43 H 1.09008 * 109.46820 * 299.99656 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 0.8360 2.7289 -1.6354 6 1 -0.0226 2.5948 -0.9941 7 6 0.7223 3.4675 -2.7942 8 7 1.7677 3.6304 -3.5754 9 14 -0.9168 4.2356 -3.2552 10 1 -1.9271 3.9060 -2.2179 11 1 -0.7645 5.7099 -3.3463 12 1 -1.3619 3.7019 -4.5675 13 16 2.4122 2.1201 1.4287 14 8 2.3057 3.5186 1.1999 15 8 1.6869 1.4414 2.4449 16 7 4.0144 1.8136 1.7138 17 6 4.4441 0.6300 2.4772 18 6 5.3115 -0.2378 1.5553 19 7 6.2991 0.5760 0.8600 20 6 7.4941 -0.0963 0.3438 21 6 6.1923 1.8904 0.6605 22 8 7.0427 2.4461 -0.0020 23 6 5.0656 2.7156 1.2200 24 1 4.6590 3.3564 0.4376 25 6 5.5827 3.5791 2.3723 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.9079 2.8920 -1.1512 32 1 2.4689 1.4184 -2.0480 33 1 1.6878 4.1503 -4.3903 34 1 5.0247 0.9429 3.3451 35 1 3.5706 0.0652 2.8028 36 1 4.6749 -0.7335 0.8225 37 1 5.8241 -0.9914 2.1532 38 1 8.1376 0.6332 -0.1478 39 1 8.0348 -0.5601 1.1687 40 1 7.1988 -0.8622 -0.3734 41 1 5.9928 2.9371 3.1518 42 1 6.3621 4.2468 2.0047 43 1 4.7620 4.1685 2.7814 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337134365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:36 Heat of formation + Delta-G solvation = -95.232324 kcal Electronic energy + Delta-G solvation = -27482.246308 eV Core-core repulsion = 23689.956039 eV Total energy + Delta-G solvation = -3792.290269 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.53428 -36.96719 -36.75055 -36.10952 -35.38586 -35.19149 -32.60953 -31.29739 -29.87691 -28.83910 -27.11155 -26.77639 -23.90550 -23.31629 -22.81178 -21.91312 -19.46856 -17.96774 -17.55129 -17.39193 -17.01567 -16.48720 -16.09004 -15.85653 -15.37560 -14.77024 -14.34326 -14.12186 -13.82370 -13.77407 -13.23034 -13.11181 -13.00332 -12.87200 -12.58930 -12.27184 -12.19234 -12.04094 -11.97801 -11.83897 -11.67853 -11.54380 -11.45370 -11.33161 -11.15006 -11.03390 -10.97513 -10.53663 -10.47319 -10.05271 -9.90554 -9.62577 -9.05698 -8.79064 -8.44376 -8.13861 -6.06056 -4.09952 1.00059 2.59480 2.83994 3.28892 3.30897 3.38949 3.43419 3.93116 4.31493 4.44177 4.53936 4.66069 4.86239 5.05215 5.09575 5.15387 5.22723 5.27173 5.31715 5.36301 5.37361 5.49211 5.64156 5.69180 5.77785 5.78960 5.89215 6.01163 6.07201 6.11576 6.20118 6.34794 6.44429 6.66927 6.94624 7.18952 7.32440 7.36681 7.57389 7.90885 8.10379 8.19349 8.92314 9.55089 11.02544 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.005412 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.786919 B = 5172.584887 C = 5676.757971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.136 3.864 3 N -0.990 5.990 4 C 0.259 3.741 5 C -0.526 4.526 6 H 0.064 0.936 7 C 0.062 3.938 8 N -0.894 5.894 9 Si 0.895 3.105 10 H -0.272 1.272 11 H -0.282 1.282 12 H -0.284 1.284 13 S 2.776 3.224 14 O -0.955 6.955 15 O -0.988 6.988 16 N -1.014 6.014 17 C 0.105 3.895 18 C 0.099 3.901 19 N -0.603 5.603 20 C 0.069 3.931 21 C 0.522 3.478 22 O -0.543 6.543 23 C 0.144 3.856 24 H 0.131 0.869 25 C -0.152 4.152 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.079 0.921 29 H 0.058 0.942 30 H 0.071 0.929 31 H 0.034 0.966 32 H 0.034 0.966 33 H 0.263 0.737 34 H 0.080 0.920 35 H 0.110 0.890 36 H 0.072 0.928 37 H 0.085 0.915 38 H 0.091 0.909 39 H 0.058 0.942 40 H 0.060 0.940 41 H 0.059 0.941 42 H 0.078 0.922 43 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.623 -10.573 11.741 18.000 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.010 3.990 3 N -0.833 5.833 4 C 0.137 3.863 5 C -0.565 4.565 6 H 0.082 0.918 7 C -0.140 4.140 8 N -0.533 5.533 9 Si 0.723 3.277 10 H -0.196 1.196 11 H -0.208 1.208 12 H -0.210 1.210 13 S 2.786 3.214 14 O -0.938 6.938 15 O -0.972 6.972 16 N -0.853 5.853 17 C -0.021 4.021 18 C -0.025 4.025 19 N -0.337 5.337 20 C -0.073 4.073 21 C 0.308 3.692 22 O -0.419 6.419 23 C 0.034 3.966 24 H 0.148 0.852 25 C -0.211 4.211 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.098 0.902 29 H 0.076 0.924 30 H 0.089 0.911 31 H 0.052 0.948 32 H 0.052 0.948 33 H 0.073 0.927 34 H 0.099 0.901 35 H 0.128 0.872 36 H 0.090 0.910 37 H 0.104 0.896 38 H 0.110 0.890 39 H 0.077 0.923 40 H 0.079 0.921 41 H 0.079 0.921 42 H 0.097 0.903 43 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 8.525 -9.673 11.775 17.462 hybrid contribution -0.671 0.075 -0.659 0.943 sum 7.854 -9.599 11.116 16.655 Atomic orbital electron populations 1.22257 0.96205 1.00890 1.03771 1.20955 0.94972 0.82216 1.00904 1.57840 1.77904 1.23111 1.24432 1.19057 0.97568 0.90836 0.78837 1.21521 0.96227 1.31966 1.06810 0.91821 1.24942 0.96841 0.96011 0.96248 1.69932 1.29219 1.40503 1.13614 0.86489 0.83809 0.79245 0.78191 1.19648 1.20822 1.21020 1.02259 0.72180 0.73880 0.73091 1.93640 1.84754 1.29908 1.85527 1.93534 1.69517 1.76484 1.57713 1.59023 1.25127 1.33434 1.67669 1.21817 1.00137 0.86299 0.93841 1.21877 0.91029 0.93628 0.95993 1.46989 1.22130 1.07754 1.56792 1.21786 0.87927 0.98327 0.99285 1.20248 0.87062 0.82213 0.79661 1.90714 1.41924 1.70015 1.39275 1.21089 0.86334 0.90745 0.98396 0.85168 1.22021 1.02574 0.99507 0.96967 0.92816 0.93029 0.90198 0.92357 0.91105 0.94807 0.94786 0.92728 0.90128 0.87172 0.90951 0.89646 0.89000 0.92336 0.92144 0.92150 0.90310 0.90443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 9.83 37.16 0.37 -2.54 16 2 C 0.14 2.22 6.09 -4.04 -0.02 2.19 16 3 N -0.99 -19.63 2.86 -115.67 -0.33 -19.96 16 4 C 0.26 6.33 5.12 -5.19 -0.03 6.30 16 5 C -0.53 -14.35 8.41 -34.44 -0.29 -14.64 16 6 H 0.06 1.73 6.89 -52.49 -0.36 1.37 16 7 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 8 N -0.89 -26.03 13.29 55.43 0.74 -25.29 16 9 Si 0.89 21.70 29.54 -169.99 -5.02 16.68 16 10 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 13 S 2.78 52.70 6.04 -107.50 -0.65 52.05 16 14 O -0.95 -22.01 16.07 -57.17 -0.92 -22.93 16 15 O -0.99 -18.92 15.81 -57.17 -0.90 -19.83 16 16 N -1.01 -14.86 3.00 -107.44 -0.32 -15.19 16 17 C 0.11 1.09 6.43 -3.39 -0.02 1.07 16 18 C 0.10 0.91 6.60 -4.26 -0.03 0.88 16 19 N -0.60 -7.33 3.20 -182.48 -0.58 -7.92 16 20 C 0.07 0.69 10.43 59.85 0.62 1.32 16 21 C 0.52 8.07 6.85 -11.73 -0.08 7.99 16 22 O -0.54 -10.04 15.97 5.56 0.09 -9.96 16 23 C 0.14 2.21 2.95 -68.91 -0.20 2.01 16 24 H 0.13 2.34 7.49 -51.93 -0.39 1.95 16 25 C -0.15 -1.93 9.38 37.16 0.35 -1.58 16 26 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 27 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.08 1.54 6.59 -51.93 -0.34 1.20 16 29 H 0.06 0.78 7.61 -51.93 -0.40 0.38 16 30 H 0.07 1.08 8.00 -51.93 -0.42 0.67 16 31 H 0.03 0.89 7.61 -51.93 -0.40 0.50 16 32 H 0.03 0.86 8.00 -51.93 -0.42 0.44 16 33 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 34 H 0.08 0.69 7.50 -51.93 -0.39 0.30 16 35 H 0.11 1.05 7.06 -51.93 -0.37 0.68 16 36 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 37 H 0.09 0.51 8.07 -51.93 -0.42 0.09 16 38 H 0.09 1.10 6.59 -51.93 -0.34 0.76 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 40 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 41 H 0.06 0.64 7.49 -51.93 -0.39 0.25 16 42 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 43 H 0.08 0.99 8.14 -51.92 -0.42 0.57 16 LS Contribution 358.86 15.07 5.41 5.41 Total: -1.00 -34.73 358.86 -8.65 -43.38 By element: Atomic # 1 Polarization: 5.62 SS G_CDS: -6.71 Total: -1.09 kcal Atomic # 6 Polarization: 4.08 SS G_CDS: 0.57 Total: 4.64 kcal Atomic # 7 Polarization: -67.86 SS G_CDS: -0.50 Total: -68.36 kcal Atomic # 8 Polarization: -50.98 SS G_CDS: -1.73 Total: -52.71 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.02 Total: 16.68 kcal Atomic # 16 Polarization: 52.70 SS G_CDS: -0.65 Total: 52.05 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -34.73 -8.65 -43.38 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337134365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.855 kcal (2) G-P(sol) polarization free energy of solvation -34.732 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.232 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds