Wall clock time and date at job start Fri Apr 10 2020 18:18:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46497 * 109.47188 * 2 1 4 4 C 1.46502 * 120.00701 * 275.00443 * 3 2 1 5 5 C 1.50696 * 109.47077 * 84.99501 * 4 3 2 6 6 H 1.08002 * 120.00008 * 0.02562 * 5 4 3 7 7 C 1.37879 * 119.99771 * 180.02562 * 5 4 3 8 8 N 1.31517 * 120.00308 * 0.02562 * 7 5 4 9 9 Si 1.86798 * 119.99912 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.47190 * 0.02562 * 9 7 5 11 11 H 1.48498 * 109.47206 * 120.00148 * 9 7 5 12 12 H 1.48498 * 109.47353 * 240.00343 * 9 7 5 13 13 S 1.65603 * 119.99810 * 94.99963 * 3 2 1 14 14 O 1.42104 * 106.40314 * 203.53927 * 13 3 2 15 15 O 1.42100 * 106.40521 * 336.46437 * 13 3 2 16 16 N 1.65606 * 107.21868 * 90.00234 * 13 3 2 17 17 C 1.47260 * 121.35296 * 269.72163 * 16 13 3 18 18 C 1.53466 * 107.93955 * 118.51137 * 17 16 13 19 19 N 1.45644 * 110.73693 * 46.90985 * 18 17 16 20 20 C 1.46502 * 117.70412 * 157.96214 * 19 18 17 21 21 C 1.33379 * 124.59332 * 337.97925 * 19 18 17 22 22 O 1.21279 * 118.49273 * 184.29870 * 21 19 18 23 23 C 1.47047 * 121.35101 * 89.99677 * 16 13 3 24 24 H 1.08998 * 109.57453 * 342.54142 * 23 16 13 25 25 C 1.53001 * 109.56501 * 102.78070 * 23 16 13 26 26 H 1.09002 * 109.47153 * 299.99573 * 1 2 3 27 27 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47261 * 59.99745 * 1 2 3 29 29 H 1.08996 * 109.47853 * 120.00399 * 2 1 3 30 30 H 1.09002 * 109.47153 * 240.00427 * 2 1 3 31 31 H 1.08997 * 109.47560 * 204.99781 * 4 3 2 32 32 H 1.09000 * 109.46547 * 324.99874 * 4 3 2 33 33 H 0.96996 * 120.00037 * 180.02562 * 8 7 5 34 34 H 1.09005 * 109.71560 * 238.19266 * 17 16 13 35 35 H 1.08997 * 109.72221 * 358.83961 * 17 16 13 36 36 H 1.08999 * 109.32614 * 286.52471 * 18 17 16 37 37 H 1.08999 * 109.10303 * 167.15066 * 18 17 16 38 38 H 1.08998 * 109.47082 * 180.02562 * 20 19 18 39 39 H 1.08996 * 109.46896 * 300.01613 * 20 19 18 40 40 H 1.09000 * 109.47082 * 60.01850 * 20 19 18 41 41 H 1.08996 * 109.47700 * 59.99647 * 25 23 16 42 42 H 1.09006 * 109.47311 * 179.97438 * 25 23 16 43 43 H 1.09008 * 109.46820 * 299.99656 * 25 23 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1088 -1.2638 5 6 0.8360 2.7289 -1.6354 6 1 -0.0226 2.5948 -0.9941 7 6 0.7223 3.4675 -2.7942 8 7 1.7677 3.6304 -3.5754 9 14 -0.9168 4.2356 -3.2552 10 1 -1.9271 3.9060 -2.2179 11 1 -0.7645 5.7099 -3.3463 12 1 -1.3619 3.7019 -4.5675 13 16 2.4122 2.1201 1.4287 14 8 2.3057 3.5186 1.1999 15 8 1.6869 1.4414 2.4449 16 7 4.0144 1.8136 1.7138 17 6 4.4441 0.6300 2.4772 18 6 5.3115 -0.2378 1.5553 19 7 6.2991 0.5760 0.8600 20 6 7.4941 -0.0963 0.3438 21 6 6.1923 1.8904 0.6605 22 8 7.0427 2.4461 -0.0020 23 6 5.0656 2.7156 1.2200 24 1 4.6590 3.3564 0.4376 25 6 5.5827 3.5791 2.3723 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 1.8934 -0.5139 0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 2.9079 2.8920 -1.1512 32 1 2.4689 1.4184 -2.0480 33 1 1.6878 4.1503 -4.3903 34 1 5.0247 0.9429 3.3451 35 1 3.5706 0.0652 2.8028 36 1 4.6749 -0.7335 0.8225 37 1 5.8241 -0.9914 2.1532 38 1 8.1376 0.6332 -0.1478 39 1 8.0348 -0.5601 1.1687 40 1 7.1988 -0.8622 -0.3734 41 1 5.9928 2.9371 3.1518 42 1 6.3621 4.2468 2.0047 43 1 4.7620 4.1685 2.7814 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337134365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:35 Heat of formation + Delta-G solvation = -121.767873 kcal Electronic energy + Delta-G solvation = -27483.396975 eV Core-core repulsion = 23689.956039 eV Total energy + Delta-G solvation = -3793.440936 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.63308 -38.43277 -38.00817 -37.72904 -36.89390 -36.33337 -34.66229 -32.34371 -31.45211 -29.82070 -28.69831 -28.05637 -24.87786 -24.69355 -24.35847 -23.40549 -20.75520 -19.17817 -18.92272 -18.61409 -18.52375 -18.36554 -17.15471 -17.03227 -16.95754 -16.35239 -15.71801 -15.34165 -15.14494 -14.94682 -14.78381 -14.57223 -14.05007 -13.99244 -13.81380 -13.72031 -13.63923 -13.24605 -13.19023 -13.12164 -13.03707 -12.97988 -12.92247 -12.82778 -12.80709 -12.59361 -12.29702 -12.26356 -12.15423 -11.64643 -11.54123 -11.21594 -10.59818 -10.17803 -9.83210 -9.74898 -8.19907 -6.30663 -0.47923 1.36804 1.39809 1.41741 1.50780 1.79765 1.99604 2.38143 2.50816 3.11091 3.22859 3.32639 3.61502 3.87863 3.94097 3.99265 4.06539 4.30351 4.44049 4.46100 4.50410 4.54611 4.63335 4.66032 4.69824 4.71857 4.85601 4.96352 4.97199 4.98985 5.11314 5.12277 5.15089 5.24625 5.44413 5.49280 5.59708 5.72571 5.95602 6.10535 6.30124 6.78113 6.98917 7.37855 8.88074 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.015141 B = 0.005412 C = 0.004931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1848.786919 B = 5172.584887 C = 5676.757971 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.125 3.875 3 N -0.997 5.997 4 C 0.278 3.722 5 C -0.536 4.536 6 H 0.059 0.941 7 C 0.009 3.991 8 N -0.927 5.927 9 Si 0.954 3.046 10 H -0.267 1.267 11 H -0.282 1.282 12 H -0.271 1.271 13 S 2.790 3.210 14 O -1.005 7.005 15 O -0.988 6.988 16 N -1.006 6.006 17 C 0.093 3.907 18 C 0.094 3.906 19 N -0.598 5.598 20 C 0.067 3.933 21 C 0.517 3.483 22 O -0.585 6.585 23 C 0.141 3.859 24 H 0.091 0.909 25 C -0.147 4.147 26 H 0.039 0.961 27 H 0.088 0.912 28 H 0.048 0.952 29 H 0.098 0.902 30 H 0.082 0.918 31 H 0.005 0.995 32 H 0.023 0.977 33 H 0.265 0.735 34 H 0.108 0.892 35 H 0.126 0.874 36 H 0.077 0.923 37 H 0.134 0.866 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.074 0.926 41 H 0.089 0.911 42 H 0.077 0.923 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.747 -13.254 13.581 20.895 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.000 4.000 3 N -0.838 5.838 4 C 0.154 3.846 5 C -0.575 4.575 6 H 0.077 0.923 7 C -0.190 4.190 8 N -0.567 5.567 9 Si 0.779 3.221 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.197 1.197 13 S 2.800 3.200 14 O -0.989 6.989 15 O -0.972 6.972 16 N -0.847 5.847 17 C -0.031 4.031 18 C -0.029 4.029 19 N -0.329 5.329 20 C -0.075 4.075 21 C 0.303 3.697 22 O -0.466 6.466 23 C 0.031 3.969 24 H 0.109 0.891 25 C -0.206 4.206 26 H 0.059 0.941 27 H 0.107 0.893 28 H 0.067 0.933 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.023 0.977 32 H 0.041 0.959 33 H 0.074 0.926 34 H 0.126 0.874 35 H 0.144 0.856 36 H 0.095 0.905 37 H 0.152 0.848 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.108 0.892 42 H 0.096 0.904 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 8.615 -12.429 13.647 20.370 hybrid contribution -0.660 0.788 -1.147 1.540 sum 7.955 -11.641 12.500 18.842 Atomic orbital electron populations 1.22237 0.96685 1.02643 1.01488 1.21302 0.94702 0.80603 1.03376 1.57747 1.78875 1.24357 1.22807 1.18515 0.95477 0.90085 0.80514 1.21850 0.97132 1.31865 1.06660 0.92324 1.25756 1.00133 0.96655 0.96433 1.70037 1.31098 1.41453 1.14136 0.85571 0.79969 0.78175 0.78400 1.19123 1.20845 1.19663 1.01596 0.72972 0.72683 0.72704 1.93573 1.85996 1.33229 1.86090 1.93523 1.70280 1.76156 1.57259 1.58598 1.23234 1.35000 1.67860 1.22316 1.01452 0.84827 0.94488 1.22190 0.90817 0.93600 0.96333 1.47138 1.23147 1.06771 1.55844 1.21950 0.86998 0.97709 1.00857 1.20182 0.86448 0.83507 0.79528 1.90693 1.43341 1.71230 1.41307 1.21007 0.86378 0.90973 0.98494 0.89084 1.22006 1.02348 0.99571 0.96652 0.94150 0.89295 0.93318 0.88417 0.89991 0.97703 0.95921 0.92583 0.87395 0.85648 0.90523 0.84790 0.91614 0.88739 0.90736 0.89224 0.90377 0.90945 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.55 9.83 71.98 0.71 -4.84 16 2 C 0.13 3.85 6.09 86.38 0.53 4.38 16 3 N -1.00 -39.63 2.86 -519.87 -1.48 -41.11 16 4 C 0.28 14.10 5.12 85.63 0.44 14.54 16 5 C -0.54 -30.09 8.41 25.60 0.22 -29.88 16 6 H 0.06 3.28 6.89 -2.91 -0.02 3.26 16 7 C 0.01 0.53 5.46 84.65 0.46 0.99 16 8 N -0.93 -55.60 13.29 21.45 0.28 -55.32 16 9 Si 0.95 45.19 29.54 68.60 2.03 47.22 16 10 H -0.27 -12.30 7.11 99.48 0.71 -11.60 16 11 H -0.28 -13.32 7.11 99.48 0.71 -12.62 16 12 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 13 S 2.79 105.72 6.04 -56.49 -0.34 105.38 16 14 O -1.00 -48.28 16.07 -128.00 -2.06 -50.34 16 15 O -0.99 -36.22 15.81 -128.00 -2.02 -38.24 16 16 N -1.01 -28.36 3.00 -493.84 -1.48 -29.84 16 17 C 0.09 1.58 6.43 86.39 0.56 2.13 16 18 C 0.09 1.31 6.60 86.70 0.57 1.88 16 19 N -0.60 -13.06 3.20 -850.42 -2.72 -15.78 16 20 C 0.07 1.16 10.43 127.77 1.33 2.49 16 21 C 0.52 15.90 6.85 87.79 0.60 16.50 16 22 O -0.59 -22.38 15.97 -3.03 -0.05 -22.43 16 23 C 0.14 4.43 2.95 44.06 0.13 4.56 16 24 H 0.09 3.57 7.49 -2.39 -0.02 3.55 16 25 C -0.15 -3.69 9.38 71.98 0.68 -3.02 16 26 H 0.04 1.38 8.14 -2.39 -0.02 1.37 16 27 H 0.09 2.16 8.14 -2.39 -0.02 2.15 16 28 H 0.05 1.87 6.59 -2.38 -0.02 1.85 16 29 H 0.10 2.24 7.61 -2.39 -0.02 2.22 16 30 H 0.08 2.35 8.00 -2.39 -0.02 2.33 16 31 H 0.01 0.28 7.61 -2.39 -0.02 0.26 16 32 H 0.02 1.19 8.00 -2.39 -0.02 1.17 16 33 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.11 1.31 7.50 -2.38 -0.02 1.30 16 35 H 0.13 1.80 7.06 -2.39 -0.02 1.79 16 36 H 0.08 1.08 8.14 -2.39 -0.02 1.06 16 37 H 0.13 0.71 8.07 -2.39 -0.02 0.69 16 38 H 0.06 1.53 6.59 -2.39 -0.02 1.51 16 39 H 0.09 0.99 8.14 -2.39 -0.02 0.97 16 40 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 41 H 0.09 1.69 7.49 -2.39 -0.02 1.67 16 42 H 0.08 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.07 1.88 8.14 -2.38 -0.02 1.86 16 Total: -1.00 -79.56 358.86 -0.63 -80.19 By element: Atomic # 1 Polarization: 9.54 SS G_CDS: 1.00 Total: 10.53 kcal Atomic # 6 Polarization: 3.52 SS G_CDS: 6.22 Total: 9.73 kcal Atomic # 7 Polarization: -136.65 SS G_CDS: -5.40 Total: -142.05 kcal Atomic # 8 Polarization: -106.87 SS G_CDS: -4.13 Total: -111.00 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.22 kcal Atomic # 16 Polarization: 105.72 SS G_CDS: -0.34 Total: 105.38 kcal Total: -79.56 -0.63 -80.19 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337134365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.575 kcal (2) G-P(sol) polarization free energy of solvation -79.559 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.193 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds