Wall clock time and date at job start Fri Apr 10 2020 18:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46612 * 2 1 4 4 C 1.46498 * 120.00165 * 277.09069 * 3 2 1 5 5 C 1.50704 * 109.47223 * 275.00535 * 4 3 2 6 6 H 1.08000 * 120.00110 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00183 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99985 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99689 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47275 * 90.00734 * 9 7 5 11 11 H 1.48506 * 109.47193 * 210.00291 * 9 7 5 12 12 H 1.48498 * 109.47396 * 330.00415 * 9 7 5 13 13 S 1.65599 * 120.00166 * 97.09618 * 3 2 1 14 14 O 1.42095 * 106.40750 * 161.55797 * 13 3 2 15 15 O 1.42108 * 106.40065 * 28.63796 * 13 3 2 16 16 N 1.65593 * 107.21700 * 275.10234 * 13 3 2 17 17 C 1.47024 * 125.65224 * 95.68794 * 16 13 3 18 18 C 1.54320 * 107.27300 * 178.97500 * 17 16 13 19 19 C 1.55152 * 102.94440 * 337.80648 * 18 17 16 20 20 C 1.52996 * 111.04063 * 153.59164 * 19 18 17 21 21 C 1.50699 * 111.00457 * 277.42852 * 19 18 17 22 22 N 1.34778 * 120.00235 * 287.90896 * 21 19 18 23 23 O 1.21281 * 120.00192 * 107.90670 * 21 19 18 24 24 C 1.47428 * 125.65030 * 275.72589 * 16 13 3 25 25 H 1.08996 * 109.47216 * 185.26382 * 1 2 3 26 26 H 1.09001 * 109.47114 * 305.25790 * 1 2 3 27 27 H 1.09004 * 109.47531 * 65.25978 * 1 2 3 28 28 H 1.09002 * 109.46764 * 240.00553 * 2 1 3 29 29 H 1.09000 * 109.47327 * 119.99975 * 2 1 3 30 30 H 1.09000 * 109.47155 * 35.00474 * 4 3 2 31 31 H 1.08998 * 109.47143 * 155.00792 * 4 3 2 32 32 H 0.97004 * 119.99975 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.88212 * 59.55647 * 17 16 13 34 34 H 1.09001 * 110.01269 * 298.46343 * 17 16 13 35 35 H 1.09002 * 110.72333 * 219.44068 * 18 17 16 36 36 H 1.09001 * 110.72226 * 96.17079 * 18 17 16 37 37 H 1.09001 * 109.47165 * 307.78383 * 20 19 18 38 38 H 1.09003 * 109.47183 * 67.78285 * 20 19 18 39 39 H 1.08994 * 109.47349 * 187.78904 * 20 19 18 40 40 H 0.97001 * 119.99326 * 0.02562 * 22 21 19 41 41 H 0.96996 * 120.00722 * 179.97438 * 22 21 19 42 42 H 1.09000 * 110.36450 * 85.25277 * 24 16 13 43 43 H 1.08999 * 110.36448 * 322.93849 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1147 2.1241 -1.2590 5 6 3.4291 1.8121 -1.9270 6 1 4.1233 1.1291 -1.4601 7 6 3.7458 2.3994 -3.1336 8 7 4.8930 2.1275 -3.7162 9 14 2.5453 3.5812 -3.9406 10 1 2.8248 4.9641 -3.4772 11 1 2.6997 3.5130 -5.4161 12 1 1.1569 3.2062 -3.5704 13 16 2.4612 2.1029 1.4231 14 8 3.2699 3.2177 1.0732 15 8 2.9042 1.0601 2.2809 16 7 1.0859 2.7198 2.1088 17 6 0.2639 2.0532 3.1294 18 6 -0.8929 3.0112 3.4836 19 6 -0.3400 4.3965 3.0563 20 6 -1.4777 5.3580 2.7068 21 6 0.5453 4.9787 4.1279 22 7 0.0033 5.4429 5.2712 23 8 1.7455 5.0295 3.9615 24 6 0.4823 4.0280 1.7963 25 1 -0.3633 -1.0233 0.0943 26 1 -0.3633 0.5932 0.8392 27 1 -0.3634 0.4301 -0.9333 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.2951 1.8333 -1.9162 31 1 2.0554 3.1933 -1.0555 32 1 5.1156 2.5403 -4.5652 33 1 0.8647 1.8534 4.0167 34 1 -0.1360 1.1192 2.7347 35 1 -1.0966 2.9908 4.5542 36 1 -1.7885 2.7613 2.9148 37 1 -2.1415 4.8871 1.9817 38 1 -2.0389 5.6002 3.6094 39 1 -1.0634 6.2715 2.2804 40 1 -0.9567 5.4019 5.4044 41 1 0.5730 5.8173 5.9611 42 1 -0.1708 3.9467 0.9274 43 1 1.2593 4.7717 1.6195 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337154670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:47 Heat of formation + Delta-G solvation = -109.267096 kcal Electronic energy + Delta-G solvation = -27131.319894 eV Core-core repulsion = 23338.421032 eV Total energy + Delta-G solvation = -3792.898862 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.51971 -37.53362 -36.58789 -36.12137 -35.07718 -34.17557 -32.56522 -32.33320 -30.24140 -29.68875 -27.10081 -26.32196 -23.59930 -22.89770 -22.34163 -21.42074 -19.59953 -18.49367 -17.79416 -17.34876 -16.95381 -16.70113 -16.53623 -15.59278 -15.25934 -14.80290 -14.39303 -14.13948 -13.97265 -13.67980 -13.54056 -13.37279 -13.02504 -12.92647 -12.66889 -12.59113 -12.43613 -12.01557 -11.92563 -11.60333 -11.51689 -11.32015 -11.24230 -11.15013 -11.06980 -10.98637 -10.91167 -10.44148 -10.34158 -10.14619 -9.91362 -9.86248 -9.51024 -8.82213 -8.54760 -8.08346 -6.03875 -4.02839 1.16179 2.49464 3.26477 3.29916 3.34764 3.36972 3.50162 4.02100 4.20093 4.32942 4.42227 4.47846 4.76247 4.98792 4.99583 5.10565 5.24170 5.28903 5.34398 5.41180 5.48347 5.53357 5.62639 5.67541 5.68747 5.79697 5.83500 5.87862 5.94665 6.20473 6.27332 6.46414 6.54251 6.58011 6.62141 6.81151 7.11177 7.15992 7.48543 7.63330 8.12562 8.53808 9.01116 9.55342 11.09832 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.004974 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.169584 B = 5627.532805 C = 6039.257041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.116 3.884 3 N -0.986 5.986 4 C 0.227 3.773 5 C -0.531 4.531 6 H 0.077 0.923 7 C 0.073 3.927 8 N -0.896 5.896 9 Si 0.872 3.128 10 H -0.272 1.272 11 H -0.284 1.284 12 H -0.265 1.265 13 S 2.795 3.205 14 O -0.952 6.952 15 O -0.989 6.989 16 N -1.016 6.016 17 C 0.120 3.880 18 C -0.111 4.111 19 C -0.098 4.098 20 C -0.135 4.135 21 C 0.528 3.472 22 N -0.858 5.858 23 O -0.519 6.519 24 C 0.140 3.860 25 H 0.059 0.941 26 H 0.050 0.950 27 H 0.059 0.941 28 H 0.087 0.913 29 H 0.077 0.923 30 H 0.032 0.968 31 H 0.030 0.970 32 H 0.264 0.736 33 H 0.066 0.934 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.090 0.910 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.067 0.933 40 H 0.398 0.602 41 H 0.401 0.599 42 H 0.075 0.925 43 H 0.093 0.907 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.400 3.515 15.973 26.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.010 4.010 3 N -0.827 5.827 4 C 0.104 3.896 5 C -0.570 4.570 6 H 0.095 0.905 7 C -0.129 4.129 8 N -0.534 5.534 9 Si 0.699 3.301 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.190 1.190 13 S 2.805 3.195 14 O -0.936 6.936 15 O -0.973 6.973 16 N -0.854 5.854 17 C -0.006 4.006 18 C -0.150 4.150 19 C -0.103 4.103 20 C -0.193 4.193 21 C 0.311 3.689 22 N -0.423 5.423 23 O -0.393 6.393 24 C 0.014 3.986 25 H 0.078 0.922 26 H 0.069 0.931 27 H 0.078 0.922 28 H 0.105 0.895 29 H 0.095 0.905 30 H 0.050 0.950 31 H 0.048 0.952 32 H 0.074 0.926 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.099 0.901 36 H 0.108 0.892 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.086 0.914 40 H 0.227 0.773 41 H 0.232 0.768 42 H 0.093 0.907 43 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -18.527 3.511 15.817 24.612 hybrid contribution -1.145 0.750 -0.329 1.407 sum -19.672 4.261 15.488 25.397 Atomic orbital electron populations 1.22283 0.97259 1.01306 1.02114 1.21162 0.92966 0.83048 1.03850 1.57641 1.80985 1.21267 1.22760 1.19408 0.98248 0.90863 0.81089 1.21391 1.01924 1.28347 1.05382 0.90473 1.24862 0.95135 0.96093 0.96835 1.69898 1.22050 1.43840 1.17609 0.86920 0.81972 0.82381 0.78856 1.19756 1.21021 1.18968 1.01642 0.72390 0.73130 0.72377 1.93626 1.63843 1.52784 1.83320 1.93516 1.79077 1.57899 1.66805 1.59313 1.45668 1.27026 1.53406 1.21629 0.91758 0.95549 0.91667 1.22732 0.98384 0.91865 1.02048 1.22003 0.96229 0.96625 0.95421 1.21738 0.96328 0.98930 1.02271 1.20251 0.88669 0.77076 0.82856 1.43849 1.12062 1.66384 1.19971 1.90844 1.15123 1.54393 1.78896 1.21864 0.96952 0.85322 0.94511 0.92181 0.93083 0.92181 0.89502 0.90505 0.94959 0.95239 0.92563 0.91585 0.91251 0.90073 0.89167 0.90718 0.91855 0.91412 0.77321 0.76842 0.90700 0.88878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.26 10.22 37.16 0.38 -1.88 16 2 C 0.12 2.02 6.42 -4.04 -0.03 2.00 16 3 N -0.99 -20.74 2.83 -115.66 -0.33 -21.07 16 4 C 0.23 5.47 4.19 -5.19 -0.02 5.45 16 5 C -0.53 -15.52 9.94 -34.44 -0.34 -15.86 16 6 H 0.08 2.48 8.06 -52.49 -0.42 2.06 16 7 C 0.07 2.17 5.47 -17.82 -0.10 2.07 16 8 N -0.90 -28.06 13.96 55.43 0.77 -27.29 16 9 Si 0.87 21.41 27.47 -169.99 -4.67 16.74 16 10 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 H -0.26 -5.97 6.54 56.52 0.37 -5.60 16 13 S 2.79 60.18 6.31 -107.50 -0.68 59.51 16 14 O -0.95 -24.76 16.36 -57.17 -0.94 -25.70 16 15 O -0.99 -22.50 16.31 -57.17 -0.93 -23.43 16 16 N -1.02 -16.30 3.71 -111.42 -0.41 -16.71 16 17 C 0.12 1.44 6.75 -3.07 -0.02 1.42 16 18 C -0.11 -0.86 5.91 -24.90 -0.15 -1.01 16 19 C -0.10 -0.95 0.83 -153.52 -0.13 -1.08 16 20 C -0.13 -0.83 8.54 37.16 0.32 -0.51 16 21 C 0.53 6.20 6.69 -10.99 -0.07 6.13 16 22 N -0.86 -5.83 8.75 31.22 0.27 -5.56 16 23 O -0.52 -9.18 16.62 5.56 0.09 -9.08 16 24 C 0.14 1.94 5.67 -2.53 -0.01 1.93 16 25 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 26 H 0.05 0.60 6.54 -51.93 -0.34 0.27 16 27 H 0.06 0.82 8.08 -51.93 -0.42 0.40 16 28 H 0.09 1.58 8.12 -51.93 -0.42 1.16 16 29 H 0.08 1.29 6.96 -51.93 -0.36 0.93 16 30 H 0.03 0.73 7.11 -51.93 -0.37 0.36 16 31 H 0.03 0.72 6.89 -51.93 -0.36 0.36 16 32 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 33 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 34 H 0.07 0.72 6.58 -51.93 -0.34 0.38 16 35 H 0.08 0.46 8.04 -51.93 -0.42 0.04 16 36 H 0.09 0.52 7.99 -51.93 -0.42 0.10 16 37 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 38 H 0.06 0.23 7.16 -51.93 -0.37 -0.14 16 39 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.40 1.32 7.82 -40.82 -0.32 1.00 16 41 H 0.40 2.48 8.93 -40.82 -0.36 2.12 16 42 H 0.07 0.88 8.04 -51.93 -0.42 0.46 16 43 H 0.09 1.56 7.20 -51.93 -0.37 1.18 16 LS Contribution 358.04 15.07 5.40 5.40 Total: -1.00 -39.99 358.04 -8.16 -48.15 By element: Atomic # 1 Polarization: 6.95 SS G_CDS: -6.57 Total: 0.38 kcal Atomic # 6 Polarization: -1.17 SS G_CDS: -0.17 Total: -1.34 kcal Atomic # 7 Polarization: -70.92 SS G_CDS: 0.31 Total: -70.62 kcal Atomic # 8 Polarization: -56.43 SS G_CDS: -1.78 Total: -58.21 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Atomic # 16 Polarization: 60.18 SS G_CDS: -0.68 Total: 59.51 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -39.99 -8.16 -48.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337154670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -61.113 kcal (2) G-P(sol) polarization free energy of solvation -39.991 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.104 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.163 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds