Wall clock time and date at job start Fri Apr 10 2020 18:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46500 * 109.46612 * 2 1 4 4 C 1.46498 * 120.00165 * 277.09069 * 3 2 1 5 5 C 1.50704 * 109.47223 * 275.00535 * 4 3 2 6 6 H 1.08000 * 120.00110 * 359.97438 * 5 4 3 7 7 C 1.37880 * 120.00183 * 180.02562 * 5 4 3 8 8 N 1.31508 * 119.99985 * 179.97438 * 7 5 4 9 9 Si 1.86797 * 119.99689 * 359.97438 * 7 5 4 10 10 H 1.48499 * 109.47275 * 90.00734 * 9 7 5 11 11 H 1.48506 * 109.47193 * 210.00291 * 9 7 5 12 12 H 1.48498 * 109.47396 * 330.00415 * 9 7 5 13 13 S 1.65599 * 120.00166 * 97.09618 * 3 2 1 14 14 O 1.42095 * 106.40750 * 161.55797 * 13 3 2 15 15 O 1.42108 * 106.40065 * 28.63796 * 13 3 2 16 16 N 1.65593 * 107.21700 * 275.10234 * 13 3 2 17 17 C 1.47024 * 125.65224 * 95.68794 * 16 13 3 18 18 C 1.54320 * 107.27300 * 178.97500 * 17 16 13 19 19 C 1.55152 * 102.94440 * 337.80648 * 18 17 16 20 20 C 1.52996 * 111.04063 * 153.59164 * 19 18 17 21 21 C 1.50699 * 111.00457 * 277.42852 * 19 18 17 22 22 N 1.34778 * 120.00235 * 287.90896 * 21 19 18 23 23 O 1.21281 * 120.00192 * 107.90670 * 21 19 18 24 24 C 1.47428 * 125.65030 * 275.72589 * 16 13 3 25 25 H 1.08996 * 109.47216 * 185.26382 * 1 2 3 26 26 H 1.09001 * 109.47114 * 305.25790 * 1 2 3 27 27 H 1.09004 * 109.47531 * 65.25978 * 1 2 3 28 28 H 1.09002 * 109.46764 * 240.00553 * 2 1 3 29 29 H 1.09000 * 109.47327 * 119.99975 * 2 1 3 30 30 H 1.09000 * 109.47155 * 35.00474 * 4 3 2 31 31 H 1.08998 * 109.47143 * 155.00792 * 4 3 2 32 32 H 0.97004 * 119.99975 * 179.97438 * 8 7 5 33 33 H 1.09004 * 109.88212 * 59.55647 * 17 16 13 34 34 H 1.09001 * 110.01269 * 298.46343 * 17 16 13 35 35 H 1.09002 * 110.72333 * 219.44068 * 18 17 16 36 36 H 1.09001 * 110.72226 * 96.17079 * 18 17 16 37 37 H 1.09001 * 109.47165 * 307.78383 * 20 19 18 38 38 H 1.09003 * 109.47183 * 67.78285 * 20 19 18 39 39 H 1.08994 * 109.47349 * 187.78904 * 20 19 18 40 40 H 0.97001 * 119.99326 * 0.02562 * 22 21 19 41 41 H 0.96996 * 120.00722 * 179.97438 * 22 21 19 42 42 H 1.09000 * 110.36450 * 85.25277 * 24 16 13 43 43 H 1.08999 * 110.36448 * 322.93849 * 24 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.1147 2.1241 -1.2590 5 6 3.4291 1.8121 -1.9270 6 1 4.1233 1.1291 -1.4601 7 6 3.7458 2.3994 -3.1336 8 7 4.8930 2.1275 -3.7162 9 14 2.5453 3.5812 -3.9406 10 1 2.8248 4.9641 -3.4772 11 1 2.6997 3.5130 -5.4161 12 1 1.1569 3.2062 -3.5704 13 16 2.4612 2.1029 1.4231 14 8 3.2699 3.2177 1.0732 15 8 2.9042 1.0601 2.2809 16 7 1.0859 2.7198 2.1088 17 6 0.2639 2.0532 3.1294 18 6 -0.8929 3.0112 3.4836 19 6 -0.3400 4.3965 3.0563 20 6 -1.4777 5.3580 2.7068 21 6 0.5453 4.9787 4.1279 22 7 0.0033 5.4429 5.2712 23 8 1.7455 5.0295 3.9615 24 6 0.4823 4.0280 1.7963 25 1 -0.3633 -1.0233 0.0943 26 1 -0.3633 0.5932 0.8392 27 1 -0.3634 0.4301 -0.9333 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5138 0.8900 30 1 1.2951 1.8333 -1.9162 31 1 2.0554 3.1933 -1.0555 32 1 5.1156 2.5403 -4.5652 33 1 0.8647 1.8534 4.0167 34 1 -0.1360 1.1192 2.7347 35 1 -1.0966 2.9908 4.5542 36 1 -1.7885 2.7613 2.9148 37 1 -2.1415 4.8871 1.9817 38 1 -2.0389 5.6002 3.6094 39 1 -1.0634 6.2715 2.2804 40 1 -0.9567 5.4019 5.4044 41 1 0.5730 5.8173 5.9611 42 1 -0.1708 3.9467 0.9274 43 1 1.2593 4.7717 1.6195 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000337154670.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:47 Heat of formation + Delta-G solvation = -145.354883 kcal Electronic energy + Delta-G solvation = -27132.884778 eV Core-core repulsion = 23338.421032 eV Total energy + Delta-G solvation = -3794.463746 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.39827 -38.53308 -38.38627 -37.77466 -36.91400 -35.04770 -34.70258 -33.16464 -31.82129 -30.55372 -28.96422 -27.08177 -24.64475 -24.46118 -23.40842 -22.94945 -20.39463 -19.94475 -19.24746 -18.83648 -18.51736 -18.20605 -17.62917 -17.12434 -16.34481 -16.16780 -15.79962 -15.69081 -15.00835 -14.85231 -14.69174 -14.57519 -14.37715 -14.22866 -13.83548 -13.74399 -13.67341 -13.51976 -13.26248 -13.17224 -13.13909 -12.76380 -12.61115 -12.58115 -12.31859 -12.18462 -12.07516 -12.03617 -11.72500 -11.71883 -11.62450 -10.82405 -10.80096 -10.63413 -10.00491 -9.81273 -8.30831 -6.37262 -0.47750 1.34003 1.40461 1.48040 1.64142 2.02730 2.34589 2.52806 2.58999 3.03115 3.13867 3.35525 3.66486 3.86893 3.92349 4.14570 4.29662 4.36383 4.42590 4.44366 4.53838 4.64122 4.73538 4.76162 4.81664 4.84219 4.99242 5.01701 5.04287 5.06511 5.10821 5.19322 5.35990 5.40441 5.44491 5.48097 5.50521 5.84415 5.92311 6.29119 6.50838 6.65008 7.25784 7.40691 8.87129 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.016350 B = 0.004974 C = 0.004635 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1712.169584 B = 5627.532805 C = 6039.257041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.106 3.894 3 N -0.991 5.991 4 C 0.238 3.762 5 C -0.547 4.547 6 H 0.022 0.978 7 C 0.006 3.994 8 N -0.950 5.950 9 Si 0.946 3.054 10 H -0.272 1.272 11 H -0.276 1.276 12 H -0.222 1.222 13 S 2.803 3.197 14 O -1.012 7.012 15 O -1.014 7.014 16 N -1.011 6.011 17 C 0.103 3.897 18 C -0.094 4.094 19 C -0.090 4.090 20 C -0.130 4.130 21 C 0.519 3.481 22 N -0.831 5.831 23 O -0.594 6.594 24 C 0.125 3.875 25 H 0.088 0.912 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.070 0.930 29 H 0.076 0.924 30 H 0.061 0.939 31 H 0.029 0.971 32 H 0.268 0.732 33 H 0.048 0.952 34 H 0.091 0.909 35 H 0.110 0.890 36 H 0.129 0.871 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.055 0.945 40 H 0.420 0.580 41 H 0.405 0.595 42 H 0.103 0.897 43 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.427 4.218 16.857 31.628 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.832 5.832 4 C 0.114 3.886 5 C -0.587 4.587 6 H 0.041 0.959 7 C -0.192 4.192 8 N -0.590 5.590 9 Si 0.767 3.233 10 H -0.198 1.198 11 H -0.201 1.201 12 H -0.144 1.144 13 S 2.814 3.186 14 O -0.996 6.996 15 O -0.998 6.998 16 N -0.853 5.853 17 C -0.022 4.022 18 C -0.133 4.133 19 C -0.095 4.095 20 C -0.188 4.188 21 C 0.304 3.696 22 N -0.396 5.396 23 O -0.473 6.473 24 C 0.000 4.000 25 H 0.107 0.893 26 H 0.088 0.912 27 H 0.079 0.921 28 H 0.088 0.912 29 H 0.094 0.906 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.066 0.934 34 H 0.109 0.891 35 H 0.129 0.871 36 H 0.147 0.853 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.074 0.926 40 H 0.253 0.747 41 H 0.237 0.763 42 H 0.121 0.879 43 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -24.626 4.181 16.762 30.082 hybrid contribution 0.813 0.473 -0.448 1.042 sum -23.813 4.655 16.314 29.239 Atomic orbital electron populations 1.22194 0.92977 1.03619 1.02980 1.21436 0.96491 0.80959 1.03068 1.57534 1.81553 1.22639 1.21431 1.19162 0.96031 0.91198 0.82240 1.21728 1.03553 1.27469 1.05915 0.95933 1.25992 0.97449 0.98234 0.97517 1.70081 1.24778 1.45692 1.18423 0.85759 0.81068 0.78800 0.77695 1.19790 1.20112 1.14409 1.00900 0.73167 0.72081 0.72430 1.93542 1.66952 1.54788 1.84277 1.93462 1.80419 1.58615 1.67303 1.58755 1.44816 1.28115 1.53609 1.22076 0.92535 0.97615 0.89963 1.22845 0.97412 0.88483 1.04551 1.22024 0.96153 0.98722 0.92588 1.21805 0.95069 0.97455 1.04459 1.20802 0.87997 0.76579 0.84201 1.43637 1.13383 1.64166 1.18390 1.90831 1.18334 1.57697 1.80459 1.22178 0.96622 0.83116 0.98097 0.89292 0.91228 0.92055 0.91190 0.90562 0.92071 0.95282 0.92303 0.93383 0.89084 0.87146 0.85269 0.88558 0.88477 0.92610 0.74739 0.76342 0.87933 0.93093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.65 10.22 71.98 0.74 -2.92 16 2 C 0.11 3.64 6.42 86.38 0.55 4.20 16 3 N -0.99 -42.32 2.83 -519.84 -1.47 -43.79 16 4 C 0.24 11.51 4.19 85.63 0.36 11.86 16 5 C -0.55 -33.46 9.94 25.60 0.25 -33.21 16 6 H 0.02 1.56 8.06 -2.91 -0.02 1.54 16 7 C 0.01 0.34 5.47 84.66 0.46 0.81 16 8 N -0.95 -62.20 13.96 21.45 0.30 -61.90 16 9 Si 0.95 43.93 27.47 68.60 1.88 45.81 16 10 H -0.27 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.28 -12.36 7.11 99.48 0.71 -11.65 16 12 H -0.22 -8.71 6.54 99.48 0.65 -8.06 16 13 S 2.80 125.76 6.31 -56.49 -0.36 125.40 16 14 O -1.01 -56.39 16.36 -128.00 -2.09 -58.48 16 15 O -1.01 -48.34 16.31 -128.00 -2.09 -50.42 16 16 N -1.01 -31.85 3.71 -506.42 -1.88 -33.73 16 17 C 0.10 2.19 6.75 86.73 0.59 2.78 16 18 C -0.09 -0.97 5.91 31.78 0.19 -0.78 16 19 C -0.09 -1.45 0.83 -51.54 -0.04 -1.49 16 20 C -0.13 -0.94 8.54 71.98 0.61 -0.33 16 21 C 0.52 11.50 6.69 87.66 0.59 12.08 16 22 N -0.83 -8.94 8.75 -173.53 -1.52 -10.45 16 23 O -0.59 -21.87 16.62 -3.03 -0.05 -21.92 16 24 C 0.13 3.33 5.67 86.85 0.49 3.82 16 25 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 26 H 0.07 1.34 6.54 -2.39 -0.02 1.32 16 27 H 0.06 1.42 8.08 -2.39 -0.02 1.40 16 28 H 0.07 2.61 8.12 -2.39 -0.02 2.59 16 29 H 0.08 2.60 6.96 -2.39 -0.02 2.58 16 30 H 0.06 2.61 7.11 -2.39 -0.02 2.59 16 31 H 0.03 1.42 6.89 -2.39 -0.02 1.40 16 32 H 0.27 16.23 8.31 -92.71 -0.77 15.46 16 33 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 34 H 0.09 1.54 6.58 -2.39 -0.02 1.53 16 35 H 0.11 0.57 8.04 -2.39 -0.02 0.55 16 36 H 0.13 0.47 7.99 -2.39 -0.02 0.45 16 37 H 0.10 0.37 8.08 -2.39 -0.02 0.35 16 38 H 0.10 0.08 7.16 -2.39 -0.02 0.06 16 39 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 40 H 0.42 0.78 7.82 -92.71 -0.73 0.06 16 41 H 0.41 4.21 8.93 -92.71 -0.83 3.38 16 42 H 0.10 2.10 8.04 -2.39 -0.02 2.08 16 43 H 0.05 1.79 7.20 -2.39 -0.02 1.77 16 Total: -1.00 -98.89 358.04 -3.05 -101.94 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -0.57 Total: 10.72 kcal Atomic # 6 Polarization: -7.97 SS G_CDS: 4.79 Total: -3.18 kcal Atomic # 7 Polarization: -145.31 SS G_CDS: -4.57 Total: -149.87 kcal Atomic # 8 Polarization: -126.59 SS G_CDS: -4.23 Total: -130.83 kcal Atomic # 14 Polarization: 43.93 SS G_CDS: 1.88 Total: 45.81 kcal Atomic # 16 Polarization: 125.76 SS G_CDS: -0.36 Total: 125.40 kcal Total: -98.89 -3.05 -101.94 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337154670.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.412 kcal (2) G-P(sol) polarization free energy of solvation -98.890 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.053 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -101.943 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds