Wall clock time and date at job start Fri Apr 10 2020 18:19:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46494 * 109.47220 * 2 1 4 4 C 1.46505 * 119.99591 * 274.99999 * 3 2 1 5 5 H 1.09004 * 110.43192 * 177.45874 * 4 3 2 6 6 C 1.54622 * 110.48649 * 299.99524 * 4 3 2 7 7 C 1.54486 * 101.76218 * 143.47628 * 6 4 3 8 8 N 1.46760 * 105.47348 * 334.58667 * 7 6 4 9 9 C 1.34417 * 111.30354 * 17.01690 * 8 7 6 10 10 O 1.21283 * 124.94504 * 179.61295 * 9 8 7 11 11 S 1.65600 * 120.00403 * 94.99794 * 3 2 1 12 12 O 1.42099 * 106.40041 * 336.45921 * 11 3 2 13 13 O 1.42103 * 106.40382 * 203.54012 * 11 3 2 14 14 N 1.65599 * 107.21815 * 90.00046 * 11 3 2 15 15 C 1.46506 * 119.99791 * 89.99936 * 14 11 3 16 16 C 1.46501 * 120.00111 * 270.00257 * 14 11 3 17 17 H 1.09000 * 109.46894 * 0.02562 * 16 14 11 18 18 C 1.52998 * 109.46930 * 239.99986 * 16 14 11 19 19 C 1.50700 * 109.47152 * 119.99702 * 16 14 11 20 20 H 1.08002 * 119.99752 * 0.02562 * 19 16 14 21 21 C 1.37872 * 119.99830 * 179.97438 * 19 16 14 22 22 N 1.31513 * 120.00186 * 0.02562 * 21 19 16 23 23 Si 1.86804 * 120.00047 * 180.02562 * 21 19 16 24 24 H 1.48507 * 109.46740 * 0.02562 * 23 21 19 25 25 H 1.48499 * 109.47213 * 120.00327 * 23 21 19 26 26 H 1.48500 * 109.47035 * 240.00328 * 23 21 19 27 27 H 1.09003 * 109.47182 * 300.00243 * 1 2 3 28 28 H 1.08997 * 109.47545 * 60.00397 * 1 2 3 29 29 H 1.09004 * 109.47009 * 180.02562 * 1 2 3 30 30 H 1.08993 * 109.47324 * 239.99772 * 2 1 3 31 31 H 1.09001 * 109.47092 * 119.99816 * 2 1 3 32 32 H 1.08996 * 110.97298 * 261.59347 * 6 4 3 33 33 H 1.09005 * 110.96848 * 25.32533 * 6 4 3 34 34 H 1.09004 * 110.24138 * 93.59163 * 7 6 4 35 35 H 1.08996 * 110.24585 * 215.49900 * 7 6 4 36 36 H 0.97001 * 124.34600 * 197.01255 * 8 7 6 37 37 H 1.09001 * 109.47060 * 90.00564 * 15 14 11 38 38 H 1.09004 * 109.47073 * 210.00053 * 15 14 11 39 39 H 1.09000 * 109.47212 * 330.00135 * 15 14 11 40 40 H 1.09000 * 109.47373 * 299.99757 * 18 16 14 41 41 H 1.08997 * 109.47624 * 59.99787 * 18 16 14 42 42 H 1.09001 * 109.46985 * 179.97438 * 18 16 14 43 43 H 0.96996 * 120.00238 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.1582 2.1086 -1.2640 5 1 2.4885 3.1309 -1.0801 6 6 3.1493 1.3799 -2.2008 7 6 2.5042 1.6139 -3.5850 8 7 1.0746 1.8156 -3.3216 9 6 0.8519 2.1004 -2.0270 10 8 -0.2377 2.3186 -1.5411 11 16 2.4122 2.1202 1.4286 12 8 1.6868 1.4416 2.4448 13 8 2.3057 3.5187 1.1997 14 7 4.0144 1.8138 1.7137 15 6 5.0372 2.7325 1.2077 16 6 4.4090 0.6239 2.4718 17 1 3.5186 0.0662 2.7621 18 6 5.1764 1.0491 3.7252 19 6 5.2900 -0.2483 1.6150 20 1 5.5321 0.0538 0.6067 21 6 5.7878 -1.4313 2.1186 22 7 5.4933 -1.7989 3.3465 23 14 6.8805 -2.5122 1.0568 24 1 7.0597 -1.8787 -0.2744 25 1 8.2041 -2.6719 1.7107 26 1 6.2466 -3.8447 0.8901 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5137 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 4.1392 1.8333 -2.1502 33 1 3.1971 0.3163 -1.9669 34 1 2.9302 2.5007 -4.0545 35 1 2.6524 0.7423 -4.2224 36 1 0.3797 1.7516 -3.9954 37 1 5.2387 3.4995 1.9556 38 1 5.9526 2.1784 0.9999 39 1 4.6815 3.2033 0.2912 40 1 6.0669 1.6064 3.4345 41 1 4.5392 1.6799 4.3449 42 1 5.4696 0.1638 4.2895 43 1 5.8438 -2.6310 3.7010 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337754044.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:16 Heat of formation + Delta-G solvation = -96.390643 kcal Electronic energy + Delta-G solvation = -27678.961925 eV Core-core repulsion = 23886.621428 eV Total energy + Delta-G solvation = -3792.340497 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 1.98 seconds Orbital eigenvalues (eV) -40.55945 -36.77453 -36.55853 -36.15576 -35.73927 -35.21089 -32.63912 -31.15520 -29.26652 -29.09780 -26.72184 -25.50843 -25.21870 -23.02690 -21.77362 -20.77626 -20.36540 -18.56956 -17.53829 -17.46014 -16.86210 -16.50943 -15.95467 -15.77940 -15.14663 -14.54723 -14.33500 -14.03478 -13.72483 -13.51327 -13.29583 -13.17055 -13.03322 -12.76231 -12.52732 -12.45054 -11.99847 -11.80887 -11.65920 -11.50621 -11.40713 -11.36782 -11.24313 -11.02572 -10.96127 -10.91382 -10.49214 -10.40493 -10.24572 -10.11088 -10.06138 -9.32698 -9.18136 -8.73626 -8.52933 -7.98368 -6.13667 -4.22524 1.13204 2.52646 3.18895 3.19251 3.27570 3.28941 3.41270 4.04759 4.27594 4.30897 4.46752 4.68811 4.85985 4.94235 5.07179 5.16909 5.31364 5.37266 5.55460 5.65832 5.70103 5.77122 5.83458 6.10145 6.12647 6.14218 6.29941 6.48683 6.54571 6.63492 6.68584 6.80493 6.85209 6.88953 6.91992 7.09956 7.46695 7.58721 7.74453 8.01557 8.18262 8.21945 8.80874 9.43941 10.91354 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.014452 B = 0.005937 C = 0.005158 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1936.954521 B = 4714.794023 C = 5426.843923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.122 3.878 3 N -0.985 5.985 4 C 0.120 3.880 5 H 0.131 0.869 6 C -0.148 4.148 7 C 0.103 3.897 8 N -0.733 5.733 9 C 0.516 3.484 10 O -0.512 6.512 11 S 2.779 3.221 12 O -0.971 6.971 13 O -0.995 6.995 14 N -0.989 5.989 15 C 0.107 3.893 16 C 0.267 3.733 17 H 0.058 0.942 18 C -0.145 4.145 19 C -0.524 4.524 20 H 0.064 0.936 21 C 0.065 3.935 22 N -0.886 5.886 23 Si 0.895 3.105 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.284 1.284 27 H 0.060 0.940 28 H 0.073 0.927 29 H 0.057 0.943 30 H 0.072 0.928 31 H 0.094 0.906 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.074 0.926 35 H 0.081 0.919 36 H 0.409 0.591 37 H 0.043 0.957 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.032 0.968 41 H 0.012 0.988 42 H 0.092 0.908 43 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.356 4.616 -13.615 14.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.003 4.003 3 N -0.821 5.821 4 C 0.009 3.991 5 H 0.148 0.852 6 C -0.188 4.188 7 C -0.022 4.022 8 N -0.390 5.390 9 C 0.300 3.700 10 O -0.386 6.386 11 S 2.790 3.210 12 O -0.955 6.955 13 O -0.979 6.979 14 N -0.832 5.832 15 C -0.040 4.040 16 C 0.164 3.836 17 H 0.076 0.924 18 C -0.204 4.204 19 C -0.564 4.564 20 H 0.082 0.918 21 C -0.138 4.138 22 N -0.524 5.524 23 Si 0.723 3.277 24 H -0.198 1.198 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.076 0.924 30 H 0.091 0.909 31 H 0.112 0.888 32 H 0.117 0.883 33 H 0.117 0.883 34 H 0.092 0.908 35 H 0.099 0.901 36 H 0.247 0.753 37 H 0.061 0.939 38 H 0.099 0.901 39 H 0.066 0.934 40 H 0.051 0.949 41 H 0.031 0.969 42 H 0.111 0.889 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.411 5.092 -12.541 13.958 hybrid contribution 0.738 -0.980 -1.165 1.692 sum -2.673 4.112 -13.706 14.557 Atomic orbital electron populations 1.22500 0.95989 1.01721 1.04097 1.21234 0.94290 0.80914 1.03836 1.57997 1.79960 1.23564 1.20565 1.21407 0.93810 0.98515 0.85407 0.85174 1.23112 0.99373 1.03786 0.92490 1.22085 0.80174 1.01997 0.97972 1.46146 1.09566 1.72799 1.10523 1.21048 0.90981 0.75200 0.82809 1.90710 1.27734 1.47948 1.72256 1.02041 0.73476 0.72727 0.72771 1.93583 1.71089 1.75674 1.55133 1.93525 1.87049 1.31283 1.85998 1.57826 1.22567 1.35633 1.67149 1.21184 0.93645 0.92219 0.96905 1.18751 0.96420 0.79796 0.88649 0.92409 1.22051 0.98425 1.01296 0.98666 1.21392 1.30801 1.04462 0.99714 0.91768 1.24927 0.96275 0.97600 0.95029 1.69889 1.44711 1.23103 1.14661 0.86503 0.80360 0.80404 0.80419 1.19810 1.21049 1.21045 0.92046 0.90859 0.92359 0.90927 0.88787 0.88311 0.88286 0.90813 0.90056 0.75250 0.93864 0.90096 0.93443 0.94864 0.96906 0.88918 0.92662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.98 9.68 37.16 0.36 -2.62 16 2 C 0.12 1.98 5.63 -4.05 -0.02 1.96 16 3 N -0.98 -16.56 2.88 -107.32 -0.31 -16.86 16 4 C 0.12 1.65 3.35 -67.94 -0.23 1.42 16 5 H 0.13 1.77 6.95 -51.93 -0.36 1.41 16 6 C -0.15 -1.47 6.72 -25.10 -0.17 -1.63 16 7 C 0.10 0.74 7.78 -3.12 -0.02 0.71 16 8 N -0.73 -6.99 6.24 -59.20 -0.37 -7.36 16 9 C 0.52 7.24 6.54 -10.86 -0.07 7.17 16 10 O -0.51 -9.15 15.40 5.55 0.09 -9.06 16 11 S 2.78 56.22 6.01 -107.50 -0.65 55.57 16 12 O -0.97 -22.76 15.67 -57.17 -0.90 -23.65 16 13 O -0.99 -20.95 15.79 -57.17 -0.90 -21.86 16 14 N -0.99 -19.89 3.12 -115.85 -0.36 -20.26 16 15 C 0.11 1.80 9.28 59.85 0.56 2.36 16 16 C 0.27 6.27 2.62 -69.08 -0.18 6.09 16 17 H 0.06 1.52 6.91 -51.93 -0.36 1.16 16 18 C -0.14 -3.38 8.97 37.16 0.33 -3.05 16 19 C -0.52 -12.63 7.99 -34.44 -0.28 -12.90 16 20 H 0.06 1.48 7.33 -52.49 -0.38 1.09 16 21 C 0.06 1.62 5.30 -17.82 -0.09 1.52 16 22 N -0.89 -23.55 11.32 55.43 0.63 -22.92 16 23 Si 0.90 19.38 29.54 -169.99 -5.02 14.36 16 24 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 25 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 26 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.07 1.20 4.43 -51.93 -0.23 0.97 16 29 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 30 H 0.07 0.99 6.43 -51.93 -0.33 0.66 16 31 H 0.09 1.71 7.61 -51.93 -0.40 1.31 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.10 1.06 6.34 -51.93 -0.33 0.73 16 34 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 35 H 0.08 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.41 3.12 8.96 -40.82 -0.37 2.75 16 37 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 38 H 0.08 1.36 7.02 -51.93 -0.36 0.99 16 39 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 40 H 0.03 0.72 7.67 -51.93 -0.40 0.32 16 41 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 42 H 0.09 2.36 6.07 -51.93 -0.32 2.04 16 43 H 0.26 6.69 8.31 -40.82 -0.34 6.35 16 LS Contribution 349.97 15.07 5.27 5.27 Total: -1.00 -32.37 349.97 -8.67 -41.04 By element: Atomic # 1 Polarization: 11.03 SS G_CDS: -6.34 Total: 4.69 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: 0.18 Total: 1.03 kcal Atomic # 7 Polarization: -66.99 SS G_CDS: -0.41 Total: -67.40 kcal Atomic # 8 Polarization: -52.86 SS G_CDS: -1.71 Total: -54.57 kcal Atomic # 14 Polarization: 19.38 SS G_CDS: -5.02 Total: 14.36 kcal Atomic # 16 Polarization: 56.22 SS G_CDS: -0.65 Total: 55.57 kcal Total LS contribution 5.27 Total: 5.27 kcal Total: -32.37 -8.67 -41.04 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337754044.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.351 kcal (2) G-P(sol) polarization free energy of solvation -32.369 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.721 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.670 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds