Wall clock time and date at job start Fri Apr 10 2020 18:19:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09006 * 109.47304 * 2 1 4 4 C 1.50695 * 109.47604 * 120.00232 * 2 1 3 5 5 H 1.08003 * 120.00199 * 119.99842 * 4 2 1 6 6 C 1.37873 * 120.00314 * 300.00256 * 4 2 1 7 7 N 1.31517 * 120.00530 * 179.97438 * 6 4 2 8 8 Si 1.86806 * 119.99822 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46760 * 89.99977 * 8 6 4 10 10 H 1.48500 * 109.47454 * 209.99927 * 8 6 4 11 11 H 1.48497 * 109.47053 * 330.00118 * 8 6 4 12 12 N 1.46500 * 109.47123 * 240.00717 * 2 1 3 13 13 C 1.46500 * 119.99852 * 304.08356 * 12 2 1 14 14 S 1.65601 * 120.00356 * 124.09025 * 12 2 1 15 15 O 1.42096 * 106.40574 * 155.30568 * 14 12 2 16 16 O 1.42102 * 106.40099 * 22.38006 * 14 12 2 17 17 N 1.65604 * 107.21479 * 268.84272 * 14 12 2 18 18 C 1.46497 * 119.99821 * 294.17125 * 17 14 12 19 19 H 1.08999 * 109.40007 * 24.56599 * 18 17 14 20 20 C 1.50175 * 109.33472 * 264.77267 * 18 17 14 21 21 O 1.21286 * 118.24022 * 42.33440 * 20 18 17 22 22 N 1.33347 * 123.51526 * 222.33740 * 20 18 17 23 23 C 1.45758 * 124.10257 * 2.21781 * 22 20 18 24 24 C 1.52917 * 110.49066 * 340.93058 * 23 22 20 25 25 C 1.53078 * 109.39651 * 144.39203 * 18 17 14 26 26 H 1.08994 * 109.67345 * 49.17551 * 25 18 17 27 27 C 1.52998 * 109.67133 * 288.67361 * 25 18 17 28 28 H 1.09000 * 109.46976 * 306.34808 * 1 2 3 29 29 H 1.08992 * 109.47820 * 66.35326 * 1 2 3 30 30 H 1.09006 * 109.47105 * 186.35363 * 1 2 3 31 31 H 0.96998 * 120.00231 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47586 * 270.00285 * 13 12 2 33 33 H 1.09004 * 109.47245 * 30.00564 * 13 12 2 34 34 H 1.09005 * 109.47286 * 149.99960 * 13 12 2 35 35 H 0.97001 * 119.99908 * 114.17841 * 17 14 12 36 36 H 0.96998 * 117.94994 * 182.22553 * 22 20 18 37 37 H 1.09004 * 109.30331 * 220.61484 * 23 22 20 38 38 H 1.09007 * 109.29875 * 101.24301 * 23 22 20 39 39 H 1.09000 * 109.60489 * 290.99497 * 24 23 22 40 40 H 1.08998 * 109.73924 * 170.58477 * 24 23 22 41 41 H 1.08999 * 109.47192 * 60.00832 * 27 25 18 42 42 H 1.09002 * 109.46939 * 180.02562 * 27 25 18 43 43 H 1.08999 * 109.47537 * 300.00102 * 27 25 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1312 6 6 1.6993 -0.2395 2.4827 7 7 2.1374 -0.8598 3.5565 8 14 0.6259 1.2796 2.6542 9 1 -0.8021 0.8741 2.6994 10 1 0.9771 1.9951 3.9072 11 1 0.8490 2.1772 1.4925 12 7 2.0183 -0.6905 -1.1963 13 6 1.5921 -2.0642 -1.4743 14 16 3.0521 0.0818 -2.2341 15 8 3.7776 -0.9364 -2.9095 16 8 3.6771 1.1140 -1.4836 17 7 2.1240 0.8339 -3.3811 18 6 1.3303 0.0364 -4.3192 19 1 1.1172 -0.9368 -3.8770 20 6 2.1060 -0.1526 -5.5912 21 8 3.2892 -0.4063 -5.5095 22 7 1.5636 -0.0565 -6.8056 23 6 0.1690 0.2878 -7.0528 24 6 -0.6699 0.0593 -5.7948 25 6 0.0141 0.7600 -4.6146 26 1 0.2166 1.7997 -4.8717 27 6 -0.8935 0.7010 -3.3843 28 1 -0.3633 0.6091 0.8277 29 1 -0.3634 0.4121 -0.9413 30 1 -0.3634 -1.0214 0.1137 31 1 1.9034 -0.5282 4.4375 32 1 2.2887 -2.7620 -1.0097 33 1 0.5930 -2.2239 -1.0686 34 1 1.5771 -2.2290 -2.5517 35 1 2.1061 1.8024 -3.4317 36 1 2.1327 -0.2263 -7.5724 37 1 -0.2175 -0.3329 -7.8612 38 1 0.1029 1.3360 -7.3445 39 1 -0.7430 -1.0093 -5.5931 40 1 -1.6678 0.4737 -5.9376 41 1 -0.3966 1.1837 -2.5428 42 1 -1.8296 1.2167 -3.5983 43 1 -1.1010 -0.3397 -3.1354 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000337772313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:32 Heat of formation + Delta-G solvation = -99.754843 kcal Electronic energy + Delta-G solvation = -27444.908225 eV Core-core repulsion = 23652.421845 eV Total energy + Delta-G solvation = -3792.486380 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.62736 -37.08918 -36.62802 -36.40982 -35.42551 -35.14530 -32.55586 -32.47150 -30.05854 -29.22408 -27.30877 -25.89542 -24.93826 -23.66132 -21.82198 -20.89389 -19.83596 -18.85213 -17.52336 -17.33800 -17.09757 -16.66809 -16.40277 -16.06759 -15.38820 -14.91638 -14.50607 -14.40795 -14.27439 -13.62288 -13.61557 -13.31985 -13.13870 -12.80891 -12.59866 -12.26349 -12.18704 -12.07884 -11.93386 -11.85540 -11.49229 -11.41367 -11.33932 -11.16239 -11.13363 -11.06891 -10.80106 -10.53355 -10.37556 -10.14283 -9.58616 -9.39131 -9.24924 -9.22857 -8.61851 -8.10771 -6.10483 -4.10697 1.11746 2.56015 3.06026 3.21654 3.32999 3.36346 3.42405 4.04906 4.23587 4.32381 4.35659 4.37808 4.42619 4.80164 4.92399 4.97390 5.08543 5.18314 5.20705 5.36894 5.40464 5.47806 5.54552 5.61707 5.76035 5.89429 6.00914 6.04960 6.15651 6.27010 6.37424 6.49365 6.55299 6.60662 6.79376 6.94270 7.15079 7.29492 7.44001 7.64542 8.14894 8.49375 8.94755 9.49356 11.02765 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020617 B = 0.005007 C = 0.004455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1357.744552 B = 5590.736991 C = 6284.253791 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.241 3.759 3 H 0.055 0.945 4 C -0.522 4.522 5 H 0.081 0.919 6 C 0.074 3.926 7 N -0.895 5.895 8 Si 0.882 3.118 9 H -0.278 1.278 10 H -0.294 1.294 11 H -0.265 1.265 12 N -0.984 5.984 13 C 0.107 3.893 14 S 2.775 3.225 15 O -0.963 6.963 16 O -0.972 6.972 17 N -1.114 6.114 18 C 0.154 3.846 19 H 0.115 0.885 20 C 0.494 3.506 21 O -0.513 6.513 22 N -0.725 5.725 23 C 0.110 3.890 24 C -0.132 4.132 25 C -0.099 4.099 26 H 0.085 0.915 27 C -0.154 4.154 28 H 0.047 0.953 29 H 0.041 0.959 30 H 0.060 0.940 31 H 0.265 0.735 32 H 0.056 0.944 33 H 0.073 0.927 34 H 0.047 0.953 35 H 0.414 0.586 36 H 0.398 0.602 37 H 0.077 0.923 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.090 0.910 41 H 0.072 0.928 42 H 0.061 0.939 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.540 3.291 -21.248 24.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.136 3.864 3 H 0.073 0.927 4 C -0.561 4.561 5 H 0.099 0.901 6 C -0.129 4.129 7 N -0.532 5.532 8 Si 0.712 3.288 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.190 1.190 12 N -0.826 5.826 13 C -0.039 4.039 14 S 2.783 3.217 15 O -0.946 6.946 16 O -0.956 6.956 17 N -0.870 5.870 18 C 0.042 3.958 19 H 0.132 0.868 20 C 0.277 3.723 21 O -0.386 6.386 22 N -0.380 5.380 23 C -0.015 4.015 24 C -0.171 4.171 25 C -0.119 4.119 26 H 0.103 0.897 27 C -0.211 4.211 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.092 0.908 34 H 0.065 0.935 35 H 0.247 0.753 36 H 0.233 0.767 37 H 0.095 0.905 38 H 0.083 0.917 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.091 0.909 42 H 0.080 0.920 43 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -10.048 2.989 -20.717 23.218 hybrid contribution -0.951 1.124 -0.115 1.476 sum -10.998 4.113 -20.833 23.914 Atomic orbital electron populations 1.22619 0.99112 1.01689 0.99230 1.19046 0.90403 0.93492 0.83428 0.92718 1.21192 1.32400 1.14228 0.88258 0.90051 1.24900 0.95776 0.96496 0.95717 1.69878 1.45265 1.40161 0.97936 0.86956 0.80463 0.83958 0.77451 1.20448 1.22132 1.18997 1.57538 1.66771 1.22321 1.36012 1.21247 1.01568 0.82968 0.98146 1.02286 0.73506 0.73617 0.72286 1.93638 1.68305 1.58346 1.74291 1.93614 1.73169 1.58601 1.70226 1.56267 1.65240 1.17735 1.47752 1.20576 0.90009 0.96965 0.88258 0.86782 1.20803 0.88794 0.77097 0.85582 1.90897 1.15525 1.45561 1.86599 1.45560 1.12114 1.72151 1.08160 1.21375 0.81099 1.00784 0.98221 1.21983 0.99481 1.02212 0.93405 1.21587 0.93645 1.00258 0.96408 0.89658 1.21987 0.98986 1.03012 0.97072 0.93481 0.94067 0.92070 0.92494 0.92509 0.90840 0.93469 0.75340 0.76679 0.90508 0.91724 0.90436 0.89116 0.90945 0.92041 0.91828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.20 8.32 37.15 0.31 -2.89 16 2 C 0.24 5.45 2.19 -69.09 -0.15 5.30 16 3 H 0.06 1.32 6.01 -51.93 -0.31 1.01 16 4 C -0.52 -14.35 9.01 -34.44 -0.31 -14.66 16 5 H 0.08 2.45 8.02 -52.48 -0.42 2.03 16 6 C 0.07 2.09 5.45 -17.82 -0.10 2.00 16 7 N -0.89 -27.03 13.96 55.43 0.77 -26.25 16 8 Si 0.88 21.21 24.31 -169.99 -4.13 17.07 16 9 H -0.28 -6.31 6.93 56.52 0.39 -5.92 16 10 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 11 H -0.26 -6.07 6.53 56.52 0.37 -5.70 16 12 N -0.98 -19.40 3.12 -115.85 -0.36 -19.76 16 13 C 0.11 1.80 9.54 59.85 0.57 2.37 16 14 S 2.77 55.15 6.00 -107.50 -0.64 54.50 16 15 O -0.96 -21.52 15.38 -64.62 -0.99 -22.52 16 16 O -0.97 -22.84 16.71 -57.17 -0.96 -23.79 16 17 N -1.11 -16.02 5.01 -6.07 -0.03 -16.05 16 18 C 0.15 1.83 2.25 -69.30 -0.16 1.67 16 19 H 0.11 1.34 5.97 -51.93 -0.31 1.03 16 20 C 0.49 6.55 7.44 -11.87 -0.09 6.46 16 21 O -0.51 -9.50 15.88 -11.56 -0.18 -9.68 16 22 N -0.72 -6.40 5.45 -61.38 -0.33 -6.73 16 23 C 0.11 0.56 7.17 -4.48 -0.03 0.53 16 24 C -0.13 -0.70 5.32 -26.59 -0.14 -0.85 16 25 C -0.10 -0.78 2.36 -90.40 -0.21 -0.99 16 26 H 0.09 0.62 8.12 -51.93 -0.42 0.19 16 27 C -0.15 -1.27 8.53 37.16 0.32 -0.96 16 28 H 0.05 0.95 3.47 -51.93 -0.18 0.77 16 29 H 0.04 0.62 5.39 -51.93 -0.28 0.34 16 30 H 0.06 1.12 6.85 -51.93 -0.36 0.77 16 31 H 0.27 7.51 8.31 -40.82 -0.34 7.17 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.12 6.36 -51.93 -0.33 0.79 16 34 H 0.05 0.66 6.07 -51.93 -0.31 0.35 16 35 H 0.41 5.02 8.83 -34.47 -0.30 4.72 16 36 H 0.40 3.17 8.80 -40.82 -0.36 2.81 16 37 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 38 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 39 H 0.08 0.42 8.12 -51.93 -0.42 0.00 16 40 H 0.09 0.31 8.14 -51.93 -0.42 -0.11 16 41 H 0.07 0.74 6.00 -51.93 -0.31 0.43 16 42 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 43 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 LS Contribution 339.11 15.07 5.11 5.11 Total: -1.00 -38.06 339.11 -7.78 -45.84 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -6.04 Total: 4.27 kcal Atomic # 6 Polarization: -2.02 SS G_CDS: 0.01 Total: -2.02 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: 0.05 Total: -68.79 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -2.13 Total: -55.99 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -4.13 Total: 17.07 kcal Atomic # 16 Polarization: 55.15 SS G_CDS: -0.64 Total: 54.50 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -38.06 -7.78 -45.84 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000337772313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.912 kcal (2) G-P(sol) polarization free energy of solvation -38.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.974 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.781 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.843 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds