Wall clock time and date at job start Fri Apr 10 2020 18:19:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99657 * 2 1 4 4 H 1.48501 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47393 * 300.00391 * 3 2 1 6 6 H 1.48509 * 109.46816 * 60.00653 * 3 2 1 7 7 C 1.38813 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00354 * 192.85952 * 7 2 1 9 9 N 1.36938 * 119.99427 * 12.86225 * 7 2 1 10 10 C 1.46813 * 120.90697 * 34.12804 * 9 7 2 11 11 C 1.53169 * 108.51848 * 233.90224 * 10 9 7 12 12 C 1.53102 * 109.35818 * 304.68216 * 11 10 9 13 13 O 1.42897 * 109.55982 * 301.10711 * 12 11 10 14 14 C 1.53116 * 109.47050 * 180.93775 * 12 11 10 15 15 C 1.53005 * 109.34993 * 300.60051 * 14 12 11 16 16 C 1.52988 * 109.53814 * 299.90973 * 15 14 12 17 17 C 1.53016 * 109.53549 * 59.77750 * 16 15 14 18 18 C 1.52976 * 109.40744 * 300.16286 * 17 16 15 19 19 H 1.08991 * 109.49264 * 300.33747 * 18 17 16 20 20 C 1.46927 * 120.65554 * 213.52886 * 9 7 2 21 21 H 1.09000 * 109.68142 * 246.32400 * 20 9 7 22 22 C 1.50695 * 109.57813 * 6.64564 * 20 9 7 23 23 C 1.38245 * 119.97317 * 45.67619 * 22 20 9 24 24 C 1.38201 * 120.02333 * 179.72615 * 23 22 20 25 25 C 1.38459 * 119.97374 * 0.53174 * 24 23 22 26 26 F 1.35102 * 120.02350 * 179.72408 * 25 24 23 27 27 C 1.38454 * 119.94820 * 359.74906 * 25 24 23 28 28 C 1.38197 * 119.97791 * 359.97438 * 27 25 24 29 29 H 0.96993 * 120.00153 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.13757 * 113.94089 * 10 9 7 31 31 H 1.09004 * 109.39249 * 353.42614 * 10 9 7 32 32 H 1.09000 * 109.48949 * 184.71242 * 11 10 9 33 33 H 1.09004 * 109.49111 * 64.64923 * 11 10 9 34 34 H 0.96699 * 113.99881 * 300.11512 * 13 12 11 35 35 H 1.08999 * 109.49703 * 60.56813 * 14 12 11 36 36 H 1.09010 * 109.49061 * 180.61590 * 14 12 11 37 37 H 1.09001 * 109.45954 * 59.92630 * 15 14 12 38 38 H 1.09000 * 109.46353 * 179.90365 * 15 14 12 39 39 H 1.08999 * 109.45975 * 179.79770 * 16 15 14 40 40 H 1.09001 * 109.46277 * 299.77308 * 16 15 14 41 41 H 1.09004 * 109.47933 * 180.18445 * 17 16 15 42 42 H 1.09000 * 109.48339 * 60.14522 * 17 16 15 43 43 H 1.07995 * 119.98944 * 359.97438 * 23 22 20 44 44 H 1.08007 * 120.01057 * 180.26338 * 24 23 22 45 45 H 1.08004 * 120.01266 * 179.97438 * 27 25 24 46 46 H 1.07992 * 119.98951 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2127 7 6 2.0103 -1.2021 -0.0005 8 1 3.0700 -1.2139 0.2076 9 7 1.3514 -2.3730 -0.2651 10 6 0.2331 -2.4108 -1.2155 11 6 -0.9775 -3.0381 -0.5176 12 6 -0.5891 -4.4121 0.0350 13 8 -0.1420 -5.2486 -1.0338 14 6 -1.8039 -5.0516 0.7129 15 6 -2.2851 -4.1469 1.8492 16 6 -1.1632 -3.9729 2.8747 17 6 0.0555 -3.3421 2.1977 18 6 0.5335 -4.2501 1.0631 19 1 0.8004 -5.2267 1.4668 20 6 1.7573 -3.6251 0.3878 21 1 2.1558 -4.3147 -0.3563 22 6 2.8127 -3.3353 1.4238 23 6 2.6490 -2.2782 2.2995 24 6 3.6134 -2.0150 3.2537 25 6 4.7492 -2.8037 3.3252 26 9 5.6953 -2.5438 4.2539 27 6 4.9147 -3.8585 2.4438 28 6 3.9463 -4.1234 1.4942 29 1 -0.4850 0.8400 0.0004 30 1 0.5017 -3.0071 -2.0875 31 1 -0.0108 -1.3955 -1.5280 32 1 -1.7918 -3.1509 -1.2333 33 1 -1.2991 -2.3945 0.3012 34 1 -0.8047 -5.3944 -1.7227 35 1 -2.6041 -5.1759 -0.0167 36 1 -1.5249 -6.0252 1.1161 37 1 -2.5622 -3.1731 1.4454 38 1 -3.1511 -4.5996 2.3320 39 1 -1.5061 -3.3253 3.6816 40 1 -0.8890 -4.9462 3.2817 41 1 0.8554 -3.2215 2.9284 42 1 -0.2173 -2.3675 1.7930 43 1 1.7652 -1.6603 2.2406 44 1 3.4833 -1.1916 3.9405 45 1 5.8004 -4.4742 2.4984 46 1 4.0750 -4.9464 0.8069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000005997086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:56 Heat of formation + Delta-G solvation = -52.857797 kcal Electronic energy + Delta-G solvation = -29496.716494 eV Core-core repulsion = 25686.732904 eV Total energy + Delta-G solvation = -3809.983590 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -48.41682 -40.25482 -38.26336 -35.34505 -35.09004 -32.47714 -31.28737 -30.55008 -29.49704 -29.15524 -27.80592 -25.40787 -23.10843 -22.63345 -21.85232 -21.71583 -20.95499 -19.70815 -17.92492 -17.24698 -16.66104 -15.92221 -15.63106 -15.34000 -15.06986 -14.96343 -14.58969 -14.25437 -13.98097 -13.70117 -13.38662 -13.02499 -12.91399 -12.81193 -12.72032 -12.41648 -12.23296 -11.98448 -11.65737 -11.22393 -11.14753 -11.03232 -10.92797 -10.80035 -10.66104 -10.49511 -10.41291 -10.30725 -10.05093 -10.00714 -9.78080 -9.52598 -9.30154 -8.93218 -8.48881 -8.35324 -7.81758 -6.54820 -5.86705 -3.35275 1.76677 1.89948 3.30832 3.40540 3.44235 4.21166 4.43001 4.69638 4.81304 5.07984 5.13859 5.26132 5.34353 5.37713 5.42069 5.49063 5.60615 5.68180 5.74423 5.86104 5.90483 5.96483 5.99628 6.04649 6.07452 6.17588 6.32264 6.39767 6.51878 6.53043 6.54316 6.59903 6.60899 6.66441 6.73716 6.78626 6.87050 6.89916 6.97562 7.02496 7.24803 7.38952 7.52558 7.57599 7.64794 7.75000 8.20243 8.42794 9.14474 9.74685 10.36631 11.15697 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.007274 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.283088 B = 3848.201703 C = 5338.312472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.008 3.992 3 Si 0.892 3.108 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.289 1.289 7 C -0.237 4.237 8 H 0.065 0.935 9 N -0.581 5.581 10 C 0.166 3.834 11 C -0.151 4.151 12 C 0.141 3.859 13 O -0.560 6.560 14 C -0.140 4.140 15 C -0.116 4.116 16 C -0.119 4.119 17 C -0.122 4.122 18 C -0.070 4.070 19 H 0.055 0.945 20 C 0.214 3.786 21 H 0.045 0.955 22 C -0.073 4.073 23 C -0.032 4.032 24 C -0.178 4.178 25 C 0.082 3.918 26 F -0.154 7.154 27 C -0.176 4.176 28 C -0.092 4.092 29 H 0.254 0.746 30 H 0.003 0.997 31 H 0.095 0.905 32 H 0.037 0.963 33 H 0.092 0.908 34 H 0.364 0.636 35 H 0.055 0.945 36 H 0.058 0.942 37 H 0.070 0.930 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.050 0.950 41 H 0.065 0.935 42 H 0.101 0.899 43 H 0.157 0.843 44 H 0.124 0.876 45 H 0.122 0.878 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.935 -8.263 2.952 8.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.534 5.534 2 C -0.191 4.191 3 Si 0.722 3.278 4 H -0.201 1.201 5 H -0.216 1.216 6 H -0.216 1.216 7 C -0.367 4.367 8 H 0.083 0.917 9 N -0.304 5.304 10 C 0.041 3.959 11 C -0.190 4.190 12 C 0.101 3.899 13 O -0.365 6.365 14 C -0.178 4.178 15 C -0.154 4.154 16 C -0.156 4.156 17 C -0.159 4.159 18 C -0.090 4.090 19 H 0.073 0.927 20 C 0.108 3.892 21 H 0.063 0.937 22 C -0.074 4.074 23 C -0.050 4.050 24 C -0.197 4.197 25 C 0.063 3.937 26 F -0.133 7.133 27 C -0.195 4.195 28 C -0.111 4.111 29 H 0.064 0.936 30 H 0.021 0.979 31 H 0.113 0.887 32 H 0.056 0.944 33 H 0.110 0.890 34 H 0.210 0.790 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.089 0.911 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.069 0.931 41 H 0.083 0.917 42 H 0.119 0.881 43 H 0.175 0.825 44 H 0.142 0.858 45 H 0.140 0.860 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -1.456 -8.094 3.339 8.876 hybrid contribution 0.025 0.926 -0.146 0.938 sum -1.431 -7.168 3.193 7.977 Atomic orbital electron populations 1.69912 1.05076 1.25395 1.53021 1.25102 0.95267 0.98066 1.00704 0.86358 0.79804 0.84245 0.77359 1.20145 1.21590 1.21597 1.19142 0.91523 0.83798 1.42197 0.91692 1.44034 1.37354 1.02971 1.46027 1.20745 0.85386 1.00551 0.89194 1.22658 0.99168 0.95677 1.01491 1.21199 0.92505 0.89709 0.86499 1.86529 1.43872 1.71137 1.34918 1.22244 0.98167 0.99160 0.98245 1.21515 0.97507 1.00244 0.96097 1.21570 0.96288 1.00128 0.97641 1.21946 0.96309 1.01080 0.96565 1.21321 0.95292 0.98023 0.94359 0.92666 1.19507 0.89761 0.89733 0.90214 0.93742 1.20018 0.95417 0.95271 0.96712 1.21414 0.99047 0.94467 0.90049 1.21146 0.94696 1.01465 1.02416 1.17718 0.87845 0.97973 0.90123 1.91421 1.63702 1.93873 1.64267 1.20820 1.01253 0.99161 0.98235 1.20826 0.93090 0.99570 0.97596 0.93609 0.97942 0.88707 0.94400 0.88958 0.78989 0.92664 0.92281 0.91121 0.93017 0.92565 0.93102 0.91677 0.88091 0.82510 0.85792 0.86018 0.86022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.37 11.09 55.49 0.62 -21.75 16 2 C 0.01 0.20 5.04 -17.43 -0.09 0.11 16 3 Si 0.89 20.47 29.57 -169.99 -5.03 15.44 16 4 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 7 C -0.24 -5.76 6.25 -15.06 -0.09 -5.86 16 8 H 0.07 1.66 6.55 -52.49 -0.34 1.32 16 9 N -0.58 -12.95 2.38 -166.24 -0.40 -13.35 16 10 C 0.17 3.62 5.44 -3.78 -0.02 3.60 16 11 C -0.15 -2.82 4.36 -26.59 -0.12 -2.94 16 12 C 0.14 2.36 0.73 -90.46 -0.07 2.29 16 13 O -0.56 -9.22 11.79 -35.23 -0.42 -9.64 16 14 C -0.14 -2.01 5.09 -26.67 -0.14 -2.15 16 15 C -0.12 -1.66 5.64 -26.73 -0.15 -1.81 16 16 C -0.12 -1.78 5.92 -26.73 -0.16 -1.93 16 17 C -0.12 -2.15 3.42 -26.74 -0.09 -2.24 16 18 C -0.07 -1.24 1.79 -90.53 -0.16 -1.41 16 19 H 0.05 0.98 8.14 -51.93 -0.42 0.56 16 20 C 0.21 4.26 2.65 -68.79 -0.18 4.08 16 21 H 0.04 0.94 7.65 -51.93 -0.40 0.54 16 22 C -0.07 -1.40 3.84 -104.62 -0.40 -1.80 16 23 C -0.03 -0.61 4.88 -39.59 -0.19 -0.81 16 24 C -0.18 -3.22 10.03 -39.51 -0.40 -3.62 16 25 C 0.08 1.45 7.30 -39.42 -0.29 1.16 16 26 F -0.15 -2.65 17.27 2.25 0.04 -2.61 16 27 C -0.18 -2.88 10.03 -39.52 -0.40 -3.28 16 28 C -0.09 -1.58 9.67 -39.59 -0.38 -1.96 16 29 H 0.25 6.33 8.31 -40.82 -0.34 5.99 16 30 H 0.00 0.06 7.82 -51.93 -0.41 -0.35 16 31 H 0.10 2.33 5.70 -51.93 -0.30 2.03 16 32 H 0.04 0.65 8.14 -51.93 -0.42 0.23 16 33 H 0.09 1.91 4.72 -51.93 -0.24 1.67 16 34 H 0.36 4.64 9.05 45.56 0.41 5.05 16 35 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 37 H 0.07 1.10 6.42 -51.93 -0.33 0.77 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 40 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 1.16 5.29 -51.93 -0.27 0.89 16 42 H 0.10 2.11 5.66 -51.93 -0.29 1.82 16 43 H 0.16 3.36 5.24 -52.49 -0.27 3.09 16 44 H 0.12 2.05 8.06 -52.48 -0.42 1.63 16 45 H 0.12 1.70 8.06 -52.48 -0.42 1.27 16 46 H 0.12 1.85 7.99 -52.49 -0.42 1.43 16 LS Contribution 339.00 15.07 5.11 5.11 Total: -1.00 -25.31 339.00 -9.21 -34.52 By element: Atomic # 1 Polarization: 16.63 SS G_CDS: -5.81 Total: 10.81 kcal Atomic # 6 Polarization: -15.22 SS G_CDS: -3.32 Total: -18.54 kcal Atomic # 7 Polarization: -35.32 SS G_CDS: 0.22 Total: -35.10 kcal Atomic # 8 Polarization: -9.22 SS G_CDS: -0.42 Total: -9.64 kcal Atomic # 9 Polarization: -2.65 SS G_CDS: 0.04 Total: -2.61 kcal Atomic # 14 Polarization: 20.47 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -25.31 -9.21 -34.52 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005997086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.334 kcal (2) G-P(sol) polarization free energy of solvation -25.314 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds