Wall clock time and date at job start Fri Apr 10 2020 18:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31618 * 1 3 3 Si 1.86802 * 119.99657 * 2 1 4 4 H 1.48501 * 109.47180 * 180.02562 * 3 2 1 5 5 H 1.48497 * 109.47393 * 300.00391 * 3 2 1 6 6 H 1.48509 * 109.46816 * 60.00653 * 3 2 1 7 7 C 1.38813 * 120.00457 * 180.02562 * 2 1 3 8 8 H 1.07998 * 120.00354 * 192.85952 * 7 2 1 9 9 N 1.36938 * 119.99427 * 12.86225 * 7 2 1 10 10 C 1.46813 * 120.90697 * 34.12804 * 9 7 2 11 11 C 1.53169 * 108.51848 * 233.90224 * 10 9 7 12 12 C 1.53102 * 109.35818 * 304.68216 * 11 10 9 13 13 O 1.42897 * 109.55982 * 301.10711 * 12 11 10 14 14 C 1.53116 * 109.47050 * 180.93775 * 12 11 10 15 15 C 1.53005 * 109.34993 * 300.60051 * 14 12 11 16 16 C 1.52988 * 109.53814 * 299.90973 * 15 14 12 17 17 C 1.53016 * 109.53549 * 59.77750 * 16 15 14 18 18 C 1.52976 * 109.40744 * 300.16286 * 17 16 15 19 19 H 1.08991 * 109.49264 * 300.33747 * 18 17 16 20 20 C 1.46927 * 120.65554 * 213.52886 * 9 7 2 21 21 H 1.09000 * 109.68142 * 246.32400 * 20 9 7 22 22 C 1.50695 * 109.57813 * 6.64564 * 20 9 7 23 23 C 1.38245 * 119.97317 * 45.67619 * 22 20 9 24 24 C 1.38201 * 120.02333 * 179.72615 * 23 22 20 25 25 C 1.38459 * 119.97374 * 0.53174 * 24 23 22 26 26 F 1.35102 * 120.02350 * 179.72408 * 25 24 23 27 27 C 1.38454 * 119.94820 * 359.74906 * 25 24 23 28 28 C 1.38197 * 119.97791 * 359.97438 * 27 25 24 29 29 H 0.96993 * 120.00153 * 359.97438 * 1 2 3 30 30 H 1.08996 * 110.13757 * 113.94089 * 10 9 7 31 31 H 1.09004 * 109.39249 * 353.42614 * 10 9 7 32 32 H 1.09000 * 109.48949 * 184.71242 * 11 10 9 33 33 H 1.09004 * 109.49111 * 64.64923 * 11 10 9 34 34 H 0.96699 * 113.99881 * 300.11512 * 13 12 11 35 35 H 1.08999 * 109.49703 * 60.56813 * 14 12 11 36 36 H 1.09010 * 109.49061 * 180.61590 * 14 12 11 37 37 H 1.09001 * 109.45954 * 59.92630 * 15 14 12 38 38 H 1.09000 * 109.46353 * 179.90365 * 15 14 12 39 39 H 1.08999 * 109.45975 * 179.79770 * 16 15 14 40 40 H 1.09001 * 109.46277 * 299.77308 * 16 15 14 41 41 H 1.09004 * 109.47933 * 180.18445 * 17 16 15 42 42 H 1.09000 * 109.48339 * 60.14522 * 17 16 15 43 43 H 1.07995 * 119.98944 * 359.97438 * 23 22 20 44 44 H 1.08007 * 120.01057 * 180.26338 * 24 23 22 45 45 H 1.08004 * 120.01266 * 179.97438 * 27 25 24 46 46 H 1.07992 * 119.98951 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 3.7101 1.3466 -0.0006 5 1 1.8913 2.3966 -1.2124 6 1 1.8914 2.3964 1.2127 7 6 2.0103 -1.2021 -0.0005 8 1 3.0700 -1.2139 0.2076 9 7 1.3514 -2.3730 -0.2651 10 6 0.2331 -2.4108 -1.2155 11 6 -0.9775 -3.0381 -0.5176 12 6 -0.5891 -4.4121 0.0350 13 8 -0.1420 -5.2486 -1.0338 14 6 -1.8039 -5.0516 0.7129 15 6 -2.2851 -4.1469 1.8492 16 6 -1.1632 -3.9729 2.8747 17 6 0.0555 -3.3421 2.1977 18 6 0.5335 -4.2501 1.0631 19 1 0.8004 -5.2267 1.4668 20 6 1.7573 -3.6251 0.3878 21 1 2.1558 -4.3147 -0.3563 22 6 2.8127 -3.3353 1.4238 23 6 2.6490 -2.2782 2.2995 24 6 3.6134 -2.0150 3.2537 25 6 4.7492 -2.8037 3.3252 26 9 5.6953 -2.5438 4.2539 27 6 4.9147 -3.8585 2.4438 28 6 3.9463 -4.1234 1.4942 29 1 -0.4850 0.8400 0.0004 30 1 0.5017 -3.0071 -2.0875 31 1 -0.0108 -1.3955 -1.5280 32 1 -1.7918 -3.1509 -1.2333 33 1 -1.2991 -2.3945 0.3012 34 1 -0.8047 -5.3944 -1.7227 35 1 -2.6041 -5.1759 -0.0167 36 1 -1.5249 -6.0252 1.1161 37 1 -2.5622 -3.1731 1.4454 38 1 -3.1511 -4.5996 2.3320 39 1 -1.5061 -3.3253 3.6816 40 1 -0.8890 -4.9462 3.2817 41 1 0.8554 -3.2215 2.9284 42 1 -0.2173 -2.3675 1.7930 43 1 1.7652 -1.6603 2.2406 44 1 3.4833 -1.1916 3.9405 45 1 5.8004 -4.4742 2.4984 46 1 4.0750 -4.9464 0.8069 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000005997086.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:52 Heat of formation + Delta-G solvation = -65.173842 kcal Electronic energy + Delta-G solvation = -29497.250558 eV Core-core repulsion = 25686.732904 eV Total energy + Delta-G solvation = -3810.517654 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 6.44 seconds Orbital eigenvalues (eV) -49.79834 -41.68651 -39.64996 -36.93916 -36.37458 -34.11247 -32.86953 -31.98556 -30.96361 -30.55800 -29.27281 -27.06596 -24.67450 -24.06292 -23.27795 -23.16850 -22.34769 -21.13582 -19.39831 -18.79611 -18.16504 -17.30785 -17.19652 -16.85132 -16.49845 -16.30768 -16.18018 -15.73396 -15.50396 -15.13575 -14.85109 -14.47449 -14.33657 -14.23696 -14.11021 -13.78671 -13.62037 -13.46546 -13.13564 -12.93393 -12.76266 -12.52487 -12.44272 -12.39812 -12.22345 -11.99989 -11.85153 -11.80850 -11.66308 -11.53915 -11.16589 -10.99540 -10.73593 -10.48065 -10.13524 -9.78425 -9.29865 -8.34093 -7.75166 -5.24882 0.33319 0.49938 1.43015 1.49784 1.55606 2.52999 2.79443 3.36990 3.41729 3.45999 3.69109 3.87986 3.90982 4.01222 4.09363 4.12214 4.24681 4.38164 4.42306 4.51793 4.56519 4.61278 4.62224 4.72361 4.77373 4.89805 4.99414 5.05666 5.11178 5.12137 5.15646 5.19943 5.22857 5.27821 5.32580 5.38878 5.47456 5.50780 5.53824 5.58254 5.70533 5.74947 5.83472 5.92235 6.03541 6.13791 6.54840 7.07478 7.26898 7.94223 8.51480 9.24566 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010363 B = 0.007274 C = 0.005244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2701.283088 B = 3848.201703 C = 5338.312472 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C -0.026 4.026 3 Si 0.934 3.066 4 H -0.280 1.280 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.229 4.229 8 H 0.051 0.949 9 N -0.589 5.589 10 C 0.167 3.833 11 C -0.139 4.139 12 C 0.146 3.854 13 O -0.571 6.571 14 C -0.132 4.132 15 C -0.114 4.114 16 C -0.116 4.116 17 C -0.112 4.112 18 C -0.067 4.067 19 H 0.063 0.937 20 C 0.214 3.786 21 H 0.034 0.966 22 C -0.088 4.088 23 C -0.040 4.040 24 C -0.184 4.184 25 C 0.077 3.923 26 F -0.151 7.151 27 C -0.163 4.163 28 C -0.092 4.092 29 H 0.247 0.753 30 H 0.000 1.000 31 H 0.063 0.937 32 H 0.052 0.948 33 H 0.071 0.929 34 H 0.382 0.618 35 H 0.074 0.926 36 H 0.069 0.931 37 H 0.052 0.948 38 H 0.077 0.923 39 H 0.060 0.940 40 H 0.066 0.934 41 H 0.057 0.943 42 H 0.064 0.936 43 H 0.131 0.869 44 H 0.133 0.867 45 H 0.154 0.846 46 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.778 -10.542 3.582 11.275 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.549 5.549 2 C -0.224 4.224 3 Si 0.765 3.235 4 H -0.206 1.206 5 H -0.222 1.222 6 H -0.220 1.220 7 C -0.359 4.359 8 H 0.068 0.932 9 N -0.312 5.312 10 C 0.042 3.958 11 C -0.178 4.178 12 C 0.106 3.894 13 O -0.378 6.378 14 C -0.170 4.170 15 C -0.151 4.151 16 C -0.153 4.153 17 C -0.149 4.149 18 C -0.087 4.087 19 H 0.081 0.919 20 C 0.108 3.892 21 H 0.052 0.948 22 C -0.088 4.088 23 C -0.058 4.058 24 C -0.203 4.203 25 C 0.058 3.942 26 F -0.129 7.129 27 C -0.182 4.182 28 C -0.110 4.110 29 H 0.057 0.943 30 H 0.018 0.982 31 H 0.081 0.919 32 H 0.070 0.930 33 H 0.090 0.910 34 H 0.230 0.770 35 H 0.092 0.908 36 H 0.088 0.912 37 H 0.071 0.929 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.084 0.916 41 H 0.075 0.925 42 H 0.083 0.917 43 H 0.149 0.851 44 H 0.151 0.849 45 H 0.171 0.829 46 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -1.299 -10.390 3.966 11.197 hybrid contribution 0.080 1.593 -0.351 1.633 sum -1.219 -8.797 3.615 9.589 Atomic orbital electron populations 1.70012 1.05495 1.25005 1.54402 1.25446 0.95754 0.99533 1.01618 0.85713 0.78722 0.82406 0.76682 1.20551 1.22219 1.21954 1.19011 0.90864 0.84748 1.41290 0.93170 1.44091 1.37334 1.03261 1.46486 1.20627 0.86714 0.98973 0.89513 1.22464 0.97986 0.96553 1.00784 1.21069 0.93118 0.88749 0.86480 1.86488 1.45114 1.70666 1.35503 1.22167 0.97299 0.99120 0.98435 1.21495 0.98042 0.99596 0.95988 1.21554 0.95312 1.00651 0.97817 1.21749 0.97315 0.99468 0.96352 1.21279 0.94845 0.97938 0.94670 0.91878 1.19511 0.91050 0.88344 0.90250 0.94784 1.20069 0.96173 0.95869 0.96703 1.21135 0.98620 0.94875 0.91199 1.21244 0.94772 1.01944 1.02307 1.17810 0.87650 0.98248 0.90496 1.91431 1.63434 1.93896 1.64183 1.21139 1.01785 0.98489 0.96739 1.21063 0.92260 0.99675 0.97993 0.94294 0.98223 0.91854 0.92959 0.91025 0.76985 0.90765 0.91186 0.92941 0.90436 0.92135 0.91568 0.92471 0.91733 0.85136 0.84948 0.82855 0.83810 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -47.25 11.09 21.65 0.24 -47.01 16 2 C -0.03 -1.33 5.04 84.86 0.43 -0.90 16 3 Si 0.93 43.29 29.57 68.60 2.03 45.32 16 4 H -0.28 -13.02 7.11 99.48 0.71 -12.31 16 5 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 6 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 7 C -0.23 -11.46 6.25 84.03 0.53 -10.93 16 8 H 0.05 2.65 6.55 -2.91 -0.02 2.63 16 9 N -0.59 -26.85 2.38 -679.86 -1.62 -28.47 16 10 C 0.17 7.44 5.44 86.38 0.47 7.91 16 11 C -0.14 -5.18 4.36 30.68 0.13 -5.05 16 12 C 0.15 4.67 0.73 -10.69 -0.01 4.66 16 13 O -0.57 -17.60 11.79 -148.98 -1.76 -19.36 16 14 C -0.13 -3.41 5.09 30.63 0.16 -3.25 16 15 C -0.11 -2.98 5.64 30.59 0.17 -2.81 16 16 C -0.12 -3.28 5.92 30.60 0.18 -3.10 16 17 C -0.11 -3.92 3.42 30.59 0.10 -3.82 16 18 C -0.07 -2.34 1.79 -10.73 -0.02 -2.36 16 19 H 0.06 2.11 8.14 -2.39 -0.02 2.09 16 20 C 0.21 8.50 2.65 44.20 0.12 8.61 16 21 H 0.03 1.42 7.65 -2.39 -0.02 1.41 16 22 C -0.09 -3.30 3.84 -19.86 -0.08 -3.37 16 23 C -0.04 -1.57 4.88 22.26 0.11 -1.46 16 24 C -0.18 -6.58 10.03 22.31 0.22 -6.36 16 25 C 0.08 2.57 7.30 22.37 0.16 2.73 16 26 F -0.15 -4.88 17.27 44.97 0.78 -4.10 16 27 C -0.16 -4.89 10.03 22.31 0.22 -4.66 16 28 C -0.09 -2.94 9.67 22.26 0.22 -2.73 16 29 H 0.25 12.84 8.31 -92.71 -0.77 12.07 16 30 H 0.00 0.00 7.82 -2.39 -0.02 -0.02 16 31 H 0.06 3.24 5.70 -2.39 -0.01 3.23 16 32 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 33 H 0.07 3.03 4.72 -2.38 -0.01 3.02 16 34 H 0.38 8.74 9.05 -74.06 -0.67 8.07 16 35 H 0.07 1.65 8.14 -2.39 -0.02 1.63 16 36 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 37 H 0.05 1.58 6.42 -2.39 -0.02 1.57 16 38 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.06 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 41 H 0.06 2.06 5.29 -2.39 -0.01 2.05 16 42 H 0.06 2.79 5.66 -2.39 -0.01 2.77 16 43 H 0.13 5.86 5.24 -2.91 -0.02 5.84 16 44 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 45 H 0.15 3.63 8.06 -2.91 -0.02 3.61 16 46 H 0.14 3.96 7.99 -2.91 -0.02 3.93 16 Total: -1.00 -55.37 339.00 3.12 -52.25 By element: Atomic # 1 Polarization: 27.93 SS G_CDS: 0.34 Total: 28.27 kcal Atomic # 6 Polarization: -30.01 SS G_CDS: 3.12 Total: -26.89 kcal Atomic # 7 Polarization: -74.11 SS G_CDS: -1.38 Total: -75.49 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: -1.76 Total: -19.36 kcal Atomic # 9 Polarization: -4.88 SS G_CDS: 0.78 Total: -4.10 kcal Atomic # 14 Polarization: 43.29 SS G_CDS: 2.03 Total: 45.32 kcal Total: -55.37 3.12 -52.25 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000005997086.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.927 kcal (2) G-P(sol) polarization free energy of solvation -55.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -52.247 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.174 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.44 seconds