Wall clock time and date at job start Fri Apr 10 2020 18:20:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99834 * 2 1 4 4 H 1.48496 * 109.47167 * 264.75746 * 3 2 1 5 5 H 1.48506 * 109.47356 * 24.75905 * 3 2 1 6 6 H 1.48507 * 109.47171 * 144.75610 * 3 2 1 7 7 C 1.38813 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00108 * 0.30702 * 7 2 1 9 9 N 1.36941 * 119.99657 * 180.29628 * 7 2 1 10 10 C 1.46938 * 120.66503 * 330.09483 * 9 7 2 11 11 C 1.53162 * 108.71135 * 233.73939 * 10 9 7 12 12 C 1.53114 * 109.37877 * 305.24135 * 11 10 9 13 13 O 1.42895 * 109.49702 * 301.22614 * 12 11 10 14 14 C 1.53034 * 109.19178 * 181.24216 * 12 11 10 15 15 C 1.52976 * 109.58120 * 180.24016 * 14 12 11 16 16 C 1.53022 * 109.39142 * 60.07745 * 15 14 12 17 17 C 1.52965 * 109.39930 * 299.84289 * 16 15 14 18 18 C 1.53028 * 109.56753 * 60.10250 * 17 16 15 19 19 H 1.09001 * 109.54548 * 60.31916 * 18 17 16 20 20 C 1.46892 * 120.65886 * 150.07369 * 9 7 2 21 21 H 1.08997 * 109.57380 * 6.52867 * 20 9 7 22 22 C 1.50700 * 109.56979 * 246.14697 * 20 9 7 23 23 C 1.38244 * 119.97179 * 176.20958 * 22 20 9 24 24 C 1.38195 * 120.02476 * 179.76836 * 23 22 20 25 25 C 1.38459 * 119.97524 * 0.51344 * 24 23 22 26 26 F 1.35094 * 120.02822 * 179.76798 * 25 24 23 27 27 C 1.38463 * 119.94837 * 359.74156 * 25 24 23 28 28 C 1.38196 * 119.97276 * 0.02562 * 27 25 24 29 29 H 0.96998 * 120.00149 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.59486 * 113.97173 * 10 9 7 31 31 H 1.09002 * 109.72426 * 353.57960 * 10 9 7 32 32 H 1.09000 * 109.48696 * 185.26868 * 11 10 9 33 33 H 1.08996 * 109.50518 * 65.22207 * 11 10 9 34 34 H 0.96708 * 114.00206 * 300.11405 * 13 12 11 35 35 H 1.08996 * 109.45347 * 300.26025 * 14 12 11 36 36 H 1.08999 * 109.45253 * 60.20518 * 14 12 11 37 37 H 1.08993 * 109.46964 * 300.10431 * 15 14 12 38 38 H 1.09007 * 109.49151 * 180.02562 * 15 14 12 39 39 H 1.09006 * 109.48184 * 179.86565 * 16 15 14 40 40 H 1.08994 * 109.48795 * 59.83218 * 16 15 14 41 41 H 1.09004 * 109.45014 * 180.12760 * 17 16 15 42 42 H 1.08995 * 109.45780 * 300.08901 * 17 16 15 43 43 H 1.08004 * 119.99167 * 0.02752 * 23 22 20 44 44 H 1.08007 * 120.01646 * 180.25609 * 24 23 22 45 45 H 1.07993 * 120.01168 * 179.97438 * 27 25 24 46 46 H 1.07997 * 119.99258 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6084 1.9824 -1.3942 5 1 1.3966 2.6821 0.5864 6 1 3.4880 1.4747 0.8080 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 -0.0041 9 7 3.3796 -1.2021 0.0067 10 6 4.1318 -0.1051 -0.6178 11 6 5.1250 -0.6991 -1.6211 12 6 6.0014 -1.7370 -0.9147 13 8 6.6957 -1.1166 0.1692 14 6 7.0124 -2.3051 -1.9133 15 6 7.8893 -3.3480 -1.2179 16 6 7.0077 -4.4807 -0.6873 17 6 6.0003 -3.9138 0.3145 18 6 5.1223 -2.8686 -0.3773 19 1 4.5825 -3.3340 -1.2020 20 6 4.1259 -2.2986 0.6381 21 1 3.4330 -3.0807 0.9484 22 6 4.8719 -1.7758 1.8386 23 6 5.5852 -2.6463 2.6413 24 6 6.2736 -2.1674 3.7398 25 6 6.2399 -0.8167 4.0423 26 9 6.9087 -0.3480 5.1185 27 6 5.5208 0.0536 3.2406 28 6 4.8371 -0.4270 2.1399 29 1 -0.4850 0.8400 -0.0004 30 1 4.6736 0.4491 0.1485 31 1 3.4447 0.5638 -1.1359 32 1 5.7542 0.0949 -2.0234 33 1 4.5788 -1.1773 -2.4342 34 1 7.2732 -0.3886 -0.0987 35 1 6.4806 -2.7726 -2.7420 36 1 7.6395 -1.4987 -2.2934 37 1 8.4202 -2.8813 -0.3883 38 1 8.6090 -3.7514 -1.9303 39 1 7.6314 -5.2259 -0.1935 40 1 6.4740 -4.9450 -1.5165 41 1 5.3734 -4.7203 0.6947 42 1 6.5346 -3.4480 1.1425 43 1 5.6081 -3.7005 2.4076 44 1 6.8343 -2.8470 4.3645 45 1 5.4935 1.1072 3.4759 46 1 4.2764 0.2515 1.5141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000013816393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:31 Heat of formation + Delta-G solvation = -12.604373 kcal Electronic energy + Delta-G solvation = -29790.436063 eV Core-core repulsion = 25982.197993 eV Total energy + Delta-G solvation = -3808.238070 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 2.13 seconds Orbital eigenvalues (eV) -48.44701 -40.67673 -38.04001 -36.09053 -35.00142 -32.66776 -31.99632 -30.67932 -29.95631 -29.37834 -28.52003 -25.32229 -23.51844 -22.85729 -22.24564 -21.86786 -21.01013 -19.71708 -19.21491 -17.19666 -16.94195 -16.03978 -15.81270 -15.58098 -15.29995 -15.14279 -14.93364 -14.67357 -14.54512 -13.79711 -13.75023 -13.42332 -13.05191 -12.84266 -12.70589 -12.65565 -12.23722 -12.08521 -11.98823 -11.85826 -11.61178 -11.35646 -11.29351 -11.07668 -10.86394 -10.67079 -10.43970 -10.32150 -10.07340 -10.01154 -9.80182 -9.59571 -9.47972 -9.09074 -8.65057 -8.40531 -7.76305 -7.02165 -5.96740 -3.42970 1.77429 1.86129 3.21947 3.23575 3.43204 4.21472 4.41602 4.50789 4.74870 4.78713 4.83934 4.92363 4.98656 5.19529 5.26119 5.32947 5.33811 5.40293 5.45268 5.56975 5.59442 5.68288 5.73612 5.86039 5.87892 5.92181 6.00390 6.04763 6.06351 6.13961 6.22546 6.28377 6.30163 6.32606 6.40848 6.44667 6.48246 6.58792 6.64128 6.67382 6.69945 6.81867 7.00023 7.28798 7.52751 7.94089 8.01775 8.29218 8.85766 9.64517 10.01909 11.19149 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.007801 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.086462 B = 3588.579296 C = 5102.093847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.021 3.979 3 Si 0.901 3.099 4 H -0.293 1.293 5 H -0.309 1.309 6 H -0.259 1.259 7 C -0.260 4.260 8 H 0.089 0.911 9 N -0.598 5.598 10 C 0.106 3.894 11 C -0.162 4.162 12 C 0.148 3.852 13 O -0.537 6.537 14 C -0.143 4.143 15 C -0.112 4.112 16 C -0.117 4.117 17 C -0.134 4.134 18 C -0.073 4.073 19 H 0.082 0.918 20 C 0.218 3.782 21 H 0.083 0.917 22 C -0.051 4.051 23 C -0.101 4.101 24 C -0.163 4.163 25 C 0.073 3.927 26 F -0.156 7.156 27 C -0.162 4.162 28 C -0.073 4.073 29 H 0.263 0.737 30 H 0.056 0.944 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.070 0.930 34 H 0.360 0.640 35 H 0.066 0.934 36 H 0.057 0.943 37 H 0.067 0.933 38 H 0.051 0.949 39 H 0.056 0.944 40 H 0.055 0.945 41 H 0.059 0.941 42 H 0.095 0.905 43 H 0.132 0.868 44 H 0.120 0.880 45 H 0.119 0.881 46 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.870 -5.094 -0.545 16.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.560 5.560 2 C -0.177 4.177 3 Si 0.737 3.263 4 H -0.222 1.222 5 H -0.239 1.239 6 H -0.185 1.185 7 C -0.389 4.389 8 H 0.107 0.893 9 N -0.320 5.320 10 C -0.018 4.018 11 C -0.201 4.201 12 C 0.107 3.893 13 O -0.342 6.342 14 C -0.181 4.181 15 C -0.149 4.149 16 C -0.154 4.154 17 C -0.172 4.172 18 C -0.093 4.093 19 H 0.100 0.900 20 C 0.111 3.889 21 H 0.101 0.899 22 C -0.053 4.053 23 C -0.120 4.120 24 C -0.182 4.182 25 C 0.054 3.946 26 F -0.135 7.135 27 C -0.181 4.181 28 C -0.090 4.090 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.088 0.912 34 H 0.206 0.794 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.074 0.926 40 H 0.074 0.926 41 H 0.077 0.923 42 H 0.113 0.887 43 H 0.150 0.850 44 H 0.138 0.862 45 H 0.137 0.863 46 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 15.339 -5.425 -0.169 16.271 hybrid contribution 0.829 1.553 -0.452 1.818 sum 16.168 -3.872 -0.620 16.637 Atomic orbital electron populations 1.69708 1.05556 1.26503 1.54185 1.25293 0.95306 0.97862 0.99278 0.87001 0.78854 0.83772 0.76713 1.22202 1.23886 1.18529 1.18932 0.79124 0.94390 1.46439 0.89348 1.44263 1.02579 1.22533 1.62615 1.21984 0.93534 0.92004 0.94285 1.22715 0.98922 0.98677 0.99821 1.20985 0.90107 0.92096 0.86097 1.86746 1.62236 1.51492 1.33687 1.22233 0.98235 0.98882 0.98727 1.21411 0.97483 0.96151 0.99868 1.21515 0.97683 0.97294 0.98920 1.22229 0.97613 0.97740 0.99576 1.21515 0.95162 0.93782 0.98821 0.90012 1.19440 0.90839 0.90711 0.87945 0.89874 1.20574 0.95301 0.93494 0.95976 1.21044 0.96955 1.00142 0.93830 1.20850 1.03959 0.93427 0.99946 1.17655 0.97534 0.92984 0.86444 1.91414 1.78984 1.89372 1.53697 1.21062 1.00668 0.99263 0.97125 1.21739 0.95865 0.96622 0.94818 0.92688 0.92651 0.91864 0.92762 0.91163 0.79421 0.91577 0.92397 0.91467 0.93004 0.92555 0.92619 0.92253 0.88683 0.85048 0.86208 0.86332 0.82649 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -27.51 13.97 55.49 0.78 -26.74 16 2 C 0.02 0.59 5.49 -17.43 -0.10 0.50 16 3 Si 0.90 21.56 23.98 -169.99 -4.08 17.49 16 4 H -0.29 -6.87 6.66 56.52 0.38 -6.49 16 5 H -0.31 -7.75 7.11 56.52 0.40 -7.35 16 6 H -0.26 -5.66 3.69 56.52 0.21 -5.45 16 7 C -0.26 -6.87 10.18 -15.06 -0.15 -7.03 16 8 H 0.09 2.52 8.06 -52.49 -0.42 2.10 16 9 N -0.60 -12.95 1.96 -166.09 -0.33 -13.27 16 10 C 0.11 2.11 3.17 -3.72 -0.01 2.10 16 11 C -0.16 -2.59 5.06 -26.59 -0.13 -2.72 16 12 C 0.15 2.05 0.55 -90.52 -0.05 2.00 16 13 O -0.54 -7.41 7.69 -35.23 -0.27 -7.68 16 14 C -0.14 -1.65 4.89 -26.73 -0.13 -1.78 16 15 C -0.11 -1.20 5.79 -26.73 -0.15 -1.35 16 16 C -0.12 -1.28 5.93 -26.74 -0.16 -1.43 16 17 C -0.13 -1.69 3.50 -26.73 -0.09 -1.78 16 18 C -0.07 -1.10 1.93 -90.45 -0.17 -1.27 16 19 H 0.08 1.30 8.14 -51.93 -0.42 0.87 16 20 C 0.22 4.00 2.70 -68.74 -0.19 3.82 16 21 H 0.08 1.59 7.93 -51.93 -0.41 1.18 16 22 C -0.05 -0.90 3.18 -104.62 -0.33 -1.23 16 23 C -0.10 -1.55 7.24 -39.60 -0.29 -1.84 16 24 C -0.16 -2.48 10.03 -39.52 -0.40 -2.88 16 25 C 0.07 1.22 7.30 -39.42 -0.29 0.93 16 26 F -0.16 -2.59 17.27 2.25 0.04 -2.55 16 27 C -0.16 -2.84 10.03 -39.51 -0.40 -3.24 16 28 C -0.07 -1.38 7.20 -39.59 -0.29 -1.67 16 29 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 30 H 0.06 1.10 3.72 -51.93 -0.19 0.90 16 31 H 0.06 1.41 3.22 -51.93 -0.17 1.24 16 32 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 34 H 0.36 4.02 9.05 45.56 0.41 4.43 16 35 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 36 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.07 0.76 7.70 -51.93 -0.40 0.36 16 38 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.06 0.70 7.79 -51.93 -0.40 0.30 16 42 H 0.10 1.26 4.15 -51.93 -0.22 1.05 16 43 H 0.13 1.73 5.46 -52.48 -0.29 1.44 16 44 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 45 H 0.12 1.92 8.06 -52.49 -0.42 1.50 16 46 H 0.16 3.25 2.29 -52.49 -0.12 3.13 16 LS Contribution 325.41 15.07 4.90 4.90 Total: -1.00 -29.07 325.41 -8.07 -37.14 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: -5.79 Total: 9.60 kcal Atomic # 6 Polarization: -15.56 SS G_CDS: -3.33 Total: -18.89 kcal Atomic # 7 Polarization: -40.46 SS G_CDS: 0.45 Total: -40.01 kcal Atomic # 8 Polarization: -7.41 SS G_CDS: -0.27 Total: -7.68 kcal Atomic # 9 Polarization: -2.59 SS G_CDS: 0.04 Total: -2.55 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -4.08 Total: 17.49 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.07 -8.07 -37.14 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013816393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.533 kcal (2) G-P(sol) polarization free energy of solvation -29.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.13 seconds