Wall clock time and date at job start Fri Apr 10 2020 18:20:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86795 * 119.99834 * 2 1 4 4 H 1.48496 * 109.47167 * 264.75746 * 3 2 1 5 5 H 1.48506 * 109.47356 * 24.75905 * 3 2 1 6 6 H 1.48507 * 109.47171 * 144.75610 * 3 2 1 7 7 C 1.38813 * 119.99881 * 179.97438 * 2 1 3 8 8 H 1.07996 * 120.00108 * 0.30702 * 7 2 1 9 9 N 1.36941 * 119.99657 * 180.29628 * 7 2 1 10 10 C 1.46938 * 120.66503 * 330.09483 * 9 7 2 11 11 C 1.53162 * 108.71135 * 233.73939 * 10 9 7 12 12 C 1.53114 * 109.37877 * 305.24135 * 11 10 9 13 13 O 1.42895 * 109.49702 * 301.22614 * 12 11 10 14 14 C 1.53034 * 109.19178 * 181.24216 * 12 11 10 15 15 C 1.52976 * 109.58120 * 180.24016 * 14 12 11 16 16 C 1.53022 * 109.39142 * 60.07745 * 15 14 12 17 17 C 1.52965 * 109.39930 * 299.84289 * 16 15 14 18 18 C 1.53028 * 109.56753 * 60.10250 * 17 16 15 19 19 H 1.09001 * 109.54548 * 60.31916 * 18 17 16 20 20 C 1.46892 * 120.65886 * 150.07369 * 9 7 2 21 21 H 1.08997 * 109.57380 * 6.52867 * 20 9 7 22 22 C 1.50700 * 109.56979 * 246.14697 * 20 9 7 23 23 C 1.38244 * 119.97179 * 176.20958 * 22 20 9 24 24 C 1.38195 * 120.02476 * 179.76836 * 23 22 20 25 25 C 1.38459 * 119.97524 * 0.51344 * 24 23 22 26 26 F 1.35094 * 120.02822 * 179.76798 * 25 24 23 27 27 C 1.38463 * 119.94837 * 359.74156 * 25 24 23 28 28 C 1.38196 * 119.97276 * 0.02562 * 27 25 24 29 29 H 0.96998 * 120.00149 * 0.02562 * 1 2 3 30 30 H 1.08991 * 109.59486 * 113.97173 * 10 9 7 31 31 H 1.09002 * 109.72426 * 353.57960 * 10 9 7 32 32 H 1.09000 * 109.48696 * 185.26868 * 11 10 9 33 33 H 1.08996 * 109.50518 * 65.22207 * 11 10 9 34 34 H 0.96708 * 114.00206 * 300.11405 * 13 12 11 35 35 H 1.08996 * 109.45347 * 300.26025 * 14 12 11 36 36 H 1.08999 * 109.45253 * 60.20518 * 14 12 11 37 37 H 1.08993 * 109.46964 * 300.10431 * 15 14 12 38 38 H 1.09007 * 109.49151 * 180.02562 * 15 14 12 39 39 H 1.09006 * 109.48184 * 179.86565 * 16 15 14 40 40 H 1.08994 * 109.48795 * 59.83218 * 16 15 14 41 41 H 1.09004 * 109.45014 * 180.12760 * 17 16 15 42 42 H 1.08995 * 109.45780 * 300.08901 * 17 16 15 43 43 H 1.08004 * 119.99167 * 0.02752 * 23 22 20 44 44 H 1.08007 * 120.01646 * 180.25609 * 24 23 22 45 45 H 1.07993 * 120.01168 * 179.97438 * 27 25 24 46 46 H 1.07997 * 119.99258 * 180.02562 * 28 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 2.6084 1.9824 -1.3942 5 1 1.3966 2.6821 0.5864 6 1 3.4880 1.4747 0.8080 7 6 2.0103 -1.2022 0.0005 8 1 1.4703 -2.1374 -0.0041 9 7 3.3796 -1.2021 0.0067 10 6 4.1318 -0.1051 -0.6178 11 6 5.1250 -0.6991 -1.6211 12 6 6.0014 -1.7370 -0.9147 13 8 6.6957 -1.1166 0.1692 14 6 7.0124 -2.3051 -1.9133 15 6 7.8893 -3.3480 -1.2179 16 6 7.0077 -4.4807 -0.6873 17 6 6.0003 -3.9138 0.3145 18 6 5.1223 -2.8686 -0.3773 19 1 4.5825 -3.3340 -1.2020 20 6 4.1259 -2.2986 0.6381 21 1 3.4330 -3.0807 0.9484 22 6 4.8719 -1.7758 1.8386 23 6 5.5852 -2.6463 2.6413 24 6 6.2736 -2.1674 3.7398 25 6 6.2399 -0.8167 4.0423 26 9 6.9087 -0.3480 5.1185 27 6 5.5208 0.0536 3.2406 28 6 4.8371 -0.4270 2.1399 29 1 -0.4850 0.8400 -0.0004 30 1 4.6736 0.4491 0.1485 31 1 3.4447 0.5638 -1.1359 32 1 5.7542 0.0949 -2.0234 33 1 4.5788 -1.1773 -2.4342 34 1 7.2732 -0.3886 -0.0987 35 1 6.4806 -2.7726 -2.7420 36 1 7.6395 -1.4987 -2.2934 37 1 8.4202 -2.8813 -0.3883 38 1 8.6090 -3.7514 -1.9303 39 1 7.6314 -5.2259 -0.1935 40 1 6.4740 -4.9450 -1.5165 41 1 5.3734 -4.7203 0.6947 42 1 6.5346 -3.4480 1.1425 43 1 5.6081 -3.7005 2.4076 44 1 6.8343 -2.8470 4.3645 45 1 5.4935 1.1072 3.4759 46 1 4.2764 0.2515 1.5141 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000013816393.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:20:28 Heat of formation + Delta-G solvation = -29.913875 kcal Electronic energy + Delta-G solvation = -29791.186659 eV Core-core repulsion = 25982.197993 eV Total energy + Delta-G solvation = -3808.988667 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.169 amu Computer time = 3.12 seconds Orbital eigenvalues (eV) -49.73556 -41.93150 -39.25724 -37.57847 -36.07898 -34.25967 -33.54391 -31.97694 -31.45787 -30.49844 -29.85412 -26.92695 -24.88327 -24.12043 -23.79920 -23.03314 -22.25639 -20.81777 -20.50599 -18.83887 -18.48127 -17.49111 -17.16898 -16.84326 -16.69579 -16.45254 -16.25625 -15.93965 -15.75393 -15.23040 -14.90700 -14.65112 -14.40182 -14.31287 -14.20317 -13.96914 -13.53301 -13.40120 -13.32929 -13.19154 -13.09871 -12.65611 -12.56279 -12.30195 -12.17778 -11.96183 -11.77990 -11.70084 -11.46738 -11.38374 -11.15823 -11.01999 -10.87798 -10.67708 -10.24645 -9.68913 -9.09230 -8.85086 -8.12986 -5.53992 0.45922 0.55982 1.25501 1.32019 1.47259 2.38987 2.89417 3.15506 3.18544 3.47746 3.49466 3.81082 3.83538 3.94310 4.02321 4.09710 4.13816 4.22335 4.31066 4.35212 4.52551 4.59376 4.61406 4.66980 4.69114 4.71672 4.78789 4.82871 4.91329 4.97953 5.05730 5.11354 5.17193 5.21267 5.27539 5.32842 5.37453 5.38819 5.42539 5.45230 5.55583 5.59783 5.74637 5.85730 5.95883 6.16619 6.21490 6.92026 7.09187 7.61957 8.03359 9.06383 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.010664 B = 0.007801 C = 0.005487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2625.086462 B = 3588.579296 C = 5102.093847 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.969 5.969 2 C -0.042 4.042 3 Si 0.959 3.041 4 H -0.286 1.286 5 H -0.328 1.328 6 H -0.228 1.228 7 C -0.240 4.240 8 H 0.052 0.948 9 N -0.608 5.608 10 C 0.103 3.897 11 C -0.159 4.159 12 C 0.157 3.843 13 O -0.544 6.544 14 C -0.136 4.136 15 C -0.107 4.107 16 C -0.115 4.115 17 C -0.129 4.129 18 C -0.070 4.070 19 H 0.068 0.932 20 C 0.213 3.787 21 H 0.063 0.937 22 C -0.055 4.055 23 C -0.094 4.094 24 C -0.152 4.152 25 C 0.066 3.934 26 F -0.155 7.155 27 C -0.168 4.168 28 C -0.093 4.093 29 H 0.258 0.742 30 H 0.064 0.936 31 H 0.038 0.962 32 H 0.081 0.919 33 H 0.057 0.943 34 H 0.374 0.626 35 H 0.063 0.937 36 H 0.074 0.926 37 H 0.066 0.934 38 H 0.068 0.932 39 H 0.073 0.927 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.094 0.906 43 H 0.157 0.843 44 H 0.150 0.850 45 H 0.125 0.875 46 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.052 -5.980 -0.263 20.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.616 5.616 2 C -0.236 4.236 3 Si 0.793 3.207 4 H -0.214 1.214 5 H -0.259 1.259 6 H -0.153 1.153 7 C -0.370 4.370 8 H 0.070 0.930 9 N -0.330 5.330 10 C -0.020 4.020 11 C -0.198 4.198 12 C 0.116 3.884 13 O -0.350 6.350 14 C -0.174 4.174 15 C -0.145 4.145 16 C -0.152 4.152 17 C -0.166 4.166 18 C -0.089 4.089 19 H 0.086 0.914 20 C 0.107 3.893 21 H 0.081 0.919 22 C -0.058 4.058 23 C -0.112 4.112 24 C -0.170 4.170 25 C 0.047 3.953 26 F -0.134 7.134 27 C -0.186 4.186 28 C -0.111 4.111 29 H 0.067 0.933 30 H 0.082 0.918 31 H 0.056 0.944 32 H 0.100 0.900 33 H 0.076 0.924 34 H 0.222 0.778 35 H 0.081 0.919 36 H 0.093 0.907 37 H 0.084 0.916 38 H 0.087 0.913 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.083 0.917 42 H 0.112 0.888 43 H 0.174 0.826 44 H 0.168 0.832 45 H 0.143 0.857 46 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 19.601 -6.334 0.110 20.599 hybrid contribution -0.476 1.705 -0.508 1.841 sum 19.125 -4.630 -0.399 19.681 Atomic orbital electron populations 1.69881 1.07464 1.26941 1.57325 1.25992 0.95932 1.01465 1.00193 0.86056 0.78456 0.78880 0.77344 1.21438 1.25876 1.15260 1.18840 0.81585 0.92843 1.43715 0.92985 1.44274 1.01055 1.23917 1.63748 1.21977 0.93591 0.91317 0.95155 1.22681 0.98604 1.00037 0.98495 1.20814 0.90227 0.90923 0.86445 1.86713 1.62460 1.52176 1.33699 1.22155 0.97761 0.99670 0.97827 1.21389 0.97373 0.95610 1.00092 1.21514 0.97406 0.97769 0.98530 1.22172 0.97590 0.97032 0.99796 1.21427 0.94933 0.95013 0.97576 0.91398 1.19579 0.91161 0.89175 0.89417 0.91850 1.20414 0.95912 0.93478 0.95948 1.21247 0.95842 1.00973 0.93132 1.21161 1.03083 0.93199 0.99607 1.17766 0.97549 0.93560 0.86395 1.91419 1.78908 1.89469 1.53592 1.21110 1.00675 0.99953 0.96910 1.21517 0.97058 0.96841 0.95660 0.93271 0.91826 0.94431 0.90035 0.92392 0.77808 0.91859 0.90714 0.91560 0.91341 0.90826 0.92633 0.91685 0.88755 0.82605 0.83198 0.85672 0.85019 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -61.48 13.97 21.65 0.30 -61.18 16 2 C -0.04 -2.45 5.49 84.86 0.47 -1.99 16 3 Si 0.96 46.16 23.98 68.60 1.65 47.80 16 4 H -0.29 -13.23 6.66 99.48 0.66 -12.57 16 5 H -0.33 -16.61 7.11 99.48 0.71 -15.90 16 6 H -0.23 -9.73 3.69 99.48 0.37 -9.36 16 7 C -0.24 -13.29 10.18 84.03 0.86 -12.43 16 8 H 0.05 3.19 8.06 -2.91 -0.02 3.17 16 9 N -0.61 -26.73 1.96 -679.39 -1.33 -28.06 16 10 C 0.10 4.03 3.17 86.35 0.27 4.31 16 11 C -0.16 -4.80 5.06 30.69 0.16 -4.64 16 12 C 0.16 3.94 0.55 -10.73 -0.01 3.93 16 13 O -0.54 -13.23 7.69 -148.98 -1.15 -14.38 16 14 C -0.14 -2.65 4.89 30.60 0.15 -2.50 16 15 C -0.11 -1.84 5.79 30.59 0.18 -1.66 16 16 C -0.11 -2.07 5.93 30.59 0.18 -1.89 16 17 C -0.13 -2.85 3.50 30.59 0.11 -2.74 16 18 C -0.07 -1.99 1.93 -10.69 -0.02 -2.01 16 19 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 20 C 0.21 7.77 2.70 44.26 0.12 7.89 16 21 H 0.06 2.50 7.93 -2.39 -0.02 2.48 16 22 C -0.06 -1.86 3.18 -19.86 -0.06 -1.92 16 23 C -0.09 -2.59 7.24 22.26 0.16 -2.43 16 24 C -0.15 -4.06 10.03 22.31 0.22 -3.83 16 25 C 0.07 2.03 7.30 22.38 0.16 2.19 16 26 F -0.15 -4.71 17.27 44.97 0.78 -3.94 16 27 C -0.17 -5.56 10.03 22.31 0.22 -5.33 16 28 C -0.09 -3.40 7.20 22.26 0.16 -3.24 16 29 H 0.26 15.76 8.31 -92.71 -0.77 14.98 16 30 H 0.06 2.43 3.72 -2.39 -0.01 2.42 16 31 H 0.04 1.68 3.22 -2.39 -0.01 1.67 16 32 H 0.08 2.02 8.14 -2.39 -0.02 2.00 16 33 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 34 H 0.37 6.90 9.05 -74.05 -0.67 6.23 16 35 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.19 7.70 -2.39 -0.02 1.17 16 38 H 0.07 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.07 1.12 8.14 -2.38 -0.02 1.10 16 40 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 41 H 0.06 1.36 7.79 -2.38 -0.02 1.34 16 42 H 0.09 2.14 4.15 -2.39 -0.01 2.13 16 43 H 0.16 3.52 5.46 -2.91 -0.02 3.50 16 44 H 0.15 3.12 8.06 -2.91 -0.02 3.10 16 45 H 0.13 3.87 8.06 -2.91 -0.02 3.84 16 46 H 0.13 5.42 2.29 -2.91 -0.01 5.41 16 Total: -1.00 -66.45 325.41 3.54 -62.91 By element: Atomic # 1 Polarization: 25.19 SS G_CDS: -0.03 Total: 25.16 kcal Atomic # 6 Polarization: -31.63 SS G_CDS: 3.33 Total: -28.31 kcal Atomic # 7 Polarization: -88.22 SS G_CDS: -1.03 Total: -89.25 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -1.15 Total: -14.38 kcal Atomic # 9 Polarization: -4.71 SS G_CDS: 0.78 Total: -3.94 kcal Atomic # 14 Polarization: 46.16 SS G_CDS: 1.65 Total: 47.80 kcal Total: -66.45 3.54 -62.91 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000013816393.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.995 kcal (2) G-P(sol) polarization free energy of solvation -66.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.455 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.909 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.914 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.12 seconds