Wall clock time and date at job start Fri Apr 10 2020 18:21:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81399 * 1 3 3 O 1.42098 * 110.54264 * 2 1 4 4 O 1.42103 * 110.54261 * 223.24963 * 2 1 3 5 5 N 1.65596 * 104.45024 * 111.62694 * 2 1 3 6 6 C 1.46499 * 120.00093 * 65.00102 * 5 2 1 7 7 C 1.53118 * 109.52490 * 145.00121 * 6 5 2 8 8 C 1.53036 * 109.28068 * 177.61960 * 7 6 5 9 9 N 1.46843 * 109.52229 * 300.82162 * 8 7 6 10 10 C 1.46902 * 110.99818 * 185.83572 * 9 8 7 11 11 C 1.50702 * 109.47027 * 169.99758 * 10 9 8 12 12 O 1.21283 * 120.00262 * 0.02562 * 11 10 9 13 13 N 1.34777 * 119.99928 * 179.72353 * 11 10 9 14 14 C 1.46499 * 120.00199 * 180.27479 * 13 11 10 15 15 C 1.50694 * 109.47550 * 180.02562 * 14 13 11 16 16 H 1.08008 * 119.99963 * 0.02562 * 15 14 13 17 17 C 1.37878 * 120.00446 * 179.97438 * 15 14 13 18 18 N 1.31513 * 120.00374 * 179.97438 * 17 15 14 19 19 Si 1.86800 * 119.99796 * 0.02562 * 17 15 14 20 20 H 1.48499 * 109.47502 * 89.99760 * 19 17 15 21 21 H 1.48498 * 109.47116 * 209.99875 * 19 17 15 22 22 H 1.48503 * 109.46936 * 329.99405 * 19 17 15 23 23 C 1.46848 * 111.20193 * 61.74013 * 9 8 7 24 24 C 1.53031 * 109.52183 * 298.25870 * 23 9 8 25 25 H 1.09002 * 109.47124 * 308.37589 * 1 2 3 26 26 H 1.09003 * 109.47533 * 68.37326 * 1 2 3 27 27 H 1.08997 * 109.46958 * 188.37478 * 1 2 3 28 28 H 0.97005 * 120.00136 * 245.00098 * 5 2 1 29 29 H 1.08994 * 109.52691 * 24.86910 * 6 5 2 30 30 H 1.09001 * 109.50142 * 57.67761 * 7 6 5 31 31 H 1.08995 * 109.50409 * 297.56383 * 7 6 5 32 32 H 1.08996 * 109.46465 * 180.80442 * 8 7 6 33 33 H 1.09004 * 109.45131 * 60.83038 * 8 7 6 34 34 H 1.09004 * 109.47131 * 50.00001 * 10 9 8 35 35 H 1.08994 * 109.47471 * 289.99751 * 10 9 8 36 36 H 0.97000 * 120.00317 * 0.28382 * 13 11 10 37 37 H 1.08998 * 109.47134 * 300.00670 * 14 13 11 38 38 H 1.09002 * 109.46857 * 59.99862 * 14 13 11 39 39 H 0.97000 * 120.00464 * 179.97438 * 18 17 15 40 40 H 1.09003 * 109.45649 * 58.27112 * 23 9 8 41 41 H 1.08995 * 109.46466 * 178.24178 * 23 9 8 42 42 H 1.09001 * 109.50516 * 299.23843 * 24 23 9 43 43 H 1.09000 * 109.50603 * 179.12077 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9692 -0.9117 5 7 2.2272 -0.5910 1.4907 6 6 1.8908 -1.9707 1.8507 7 6 2.9971 -2.5532 2.7346 8 6 2.6121 -3.9731 3.1560 9 7 1.3410 -3.9394 3.8904 10 6 1.0095 -5.2649 4.4301 11 6 -0.1586 -5.1449 5.3747 12 8 -0.6653 -4.0619 5.5780 13 7 -0.6440 -6.2419 5.9889 14 6 -1.7833 -6.1262 6.9026 15 6 -2.1265 -7.4866 7.4525 16 1 -1.5529 -8.3511 7.1518 17 6 -3.1719 -7.6278 8.3403 18 7 -3.4717 -8.8151 8.8198 19 14 -4.1634 -6.1327 8.8609 20 1 -5.3054 -5.9473 7.9299 21 1 -4.6766 -6.3347 10.2397 22 1 -3.2964 -4.9275 8.8270 23 6 0.2535 -3.4278 3.0465 24 6 0.5681 -1.9916 2.6219 25 1 -0.3633 0.6380 0.8057 26 1 -0.3634 0.3788 -0.9553 27 1 -0.3633 -1.0167 0.1497 28 1 2.6920 -0.0237 2.1256 29 1 1.7942 -2.5701 0.9455 30 1 3.1199 -1.9311 3.6212 31 1 3.9327 -2.5804 2.1761 32 1 3.3912 -4.3855 3.7972 33 1 2.5029 -4.5979 2.2695 34 1 1.8704 -5.6647 4.9658 35 1 0.7474 -5.9353 3.6116 36 1 -0.2389 -7.1082 5.8262 37 1 -1.5242 -5.4576 7.7235 38 1 -2.6416 -5.7245 6.3640 39 1 -4.2070 -8.9144 9.4446 40 1 0.1555 -4.0553 2.1606 41 1 -0.6805 -3.4441 3.6082 42 1 0.6528 -1.3608 3.5067 43 1 -0.2317 -1.6176 1.9827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000040477952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:40 Heat of formation + Delta-G solvation = -103.312215 kcal Electronic energy + Delta-G solvation = -25048.906502 eV Core-core repulsion = 21256.265862 eV Total energy + Delta-G solvation = -3792.640639 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.87855 -38.48812 -37.43681 -36.32446 -35.60434 -34.27522 -32.41571 -31.44589 -31.17766 -29.82413 -28.54376 -26.39990 -23.45838 -23.19850 -21.83129 -20.45328 -19.89047 -19.66381 -17.99715 -17.30490 -17.07163 -16.60682 -16.05908 -16.00302 -15.46869 -15.34416 -14.79226 -14.63250 -14.27093 -14.08554 -13.84094 -13.77898 -13.55991 -13.50349 -12.80854 -12.71374 -12.56857 -12.48249 -12.38406 -12.35121 -12.08340 -11.84385 -11.53389 -11.44629 -11.38165 -11.10750 -11.02265 -10.79360 -10.74946 -10.00614 -9.76647 -9.53353 -9.19544 -8.81209 -8.37274 -8.15332 -6.24920 -4.27369 -0.11175 2.31011 3.18420 3.23922 3.30335 3.38652 3.40924 3.49793 3.80325 4.14331 4.27299 4.30143 4.38774 4.50801 4.57872 4.71057 4.90374 4.96031 5.09772 5.10444 5.21630 5.21984 5.26810 5.33315 5.42645 5.46478 5.52814 5.63075 5.75196 5.88177 6.03944 6.11519 6.60286 6.72900 6.89205 7.00216 7.03637 7.19852 7.35931 8.10634 8.48119 8.72042 8.91092 9.35173 10.87012 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.028709 B = 0.002360 C = 0.002249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 975.073266 B =11862.822973 C =12445.853564 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.613 3.387 3 O -0.963 6.963 4 O -0.959 6.959 5 N -1.113 6.113 6 C 0.143 3.857 7 C -0.115 4.115 8 C 0.056 3.944 9 N -0.520 5.520 10 C 0.036 3.964 11 C 0.500 3.500 12 O -0.542 6.542 13 N -0.707 5.707 14 C 0.222 3.778 15 C -0.544 4.544 16 H 0.079 0.921 17 C 0.077 3.923 18 N -0.892 5.892 19 Si 0.878 3.122 20 H -0.274 1.274 21 H -0.283 1.283 22 H -0.260 1.260 23 C 0.050 3.950 24 C -0.137 4.137 25 H 0.132 0.868 26 H 0.128 0.872 27 H 0.130 0.870 28 H 0.419 0.581 29 H 0.090 0.910 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.037 0.963 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.396 0.604 37 H 0.025 0.975 38 H 0.019 0.981 39 H 0.268 0.732 40 H 0.029 0.971 41 H 0.104 0.896 42 H 0.085 0.915 43 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.509 14.212 -17.111 25.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.705 3.295 3 O -0.953 6.953 4 O -0.949 6.949 5 N -0.871 5.871 6 C 0.036 3.964 7 C -0.155 4.155 8 C -0.073 4.073 9 N -0.245 5.245 10 C -0.095 4.095 11 C 0.285 3.715 12 O -0.420 6.420 13 N -0.357 5.357 14 C 0.100 3.900 15 C -0.582 4.582 16 H 0.097 0.903 17 C -0.127 4.127 18 N -0.529 5.529 19 Si 0.704 3.296 20 H -0.199 1.199 21 H -0.209 1.209 22 H -0.185 1.185 23 C -0.078 4.078 24 C -0.176 4.176 25 H 0.150 0.850 26 H 0.146 0.854 27 H 0.149 0.851 28 H 0.253 0.747 29 H 0.108 0.892 30 H 0.099 0.901 31 H 0.095 0.905 32 H 0.100 0.900 33 H 0.055 0.945 34 H 0.120 0.880 35 H 0.079 0.921 36 H 0.229 0.771 37 H 0.043 0.957 38 H 0.037 0.963 39 H 0.078 0.922 40 H 0.047 0.953 41 H 0.122 0.878 42 H 0.104 0.896 43 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 11.551 15.363 -17.257 25.831 hybrid contribution -1.055 -0.326 0.264 1.136 sum 10.496 15.037 -16.993 25.001 Atomic orbital electron populations 1.30648 1.28294 1.11920 1.11684 1.04693 0.77609 0.73762 0.73398 1.93619 1.78054 1.37775 1.85837 1.93620 1.77063 1.61855 1.62343 1.55610 1.73855 1.21388 1.36248 1.21010 0.95460 0.81102 0.98832 1.21800 0.97479 0.96407 0.99790 1.22106 0.92122 0.96261 0.96807 1.61556 1.02630 1.23492 1.36786 1.21981 0.98654 0.90813 0.98091 1.20357 0.84533 0.84853 0.81781 1.90613 1.60495 1.27018 1.63896 1.46187 1.34450 1.09250 1.45792 1.19462 0.83909 0.98185 0.88422 1.21094 1.17103 0.92541 1.27477 0.90274 1.24806 0.96607 0.96085 0.95180 1.69877 1.29511 1.22398 1.31156 0.86806 0.80907 0.83625 0.78268 1.19904 1.20912 1.18479 1.22260 0.96466 0.94045 0.95077 1.22223 0.96036 0.98163 1.01186 0.84972 0.85352 0.85144 0.74660 0.89219 0.90066 0.90532 0.89963 0.94486 0.87997 0.92114 0.77080 0.95713 0.96287 0.92242 0.95252 0.87779 0.89600 0.91421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -3.08 10.12 101.05 1.02 -2.06 16 2 S 2.61 19.32 6.08 -107.50 -0.65 18.66 16 3 O -0.96 -10.31 18.08 -57.54 -1.04 -11.35 16 4 O -0.96 -10.49 17.39 -57.54 -1.00 -11.49 16 5 N -1.11 -7.26 5.37 -4.79 -0.03 -7.29 16 6 C 0.14 1.08 2.76 -67.81 -0.19 0.89 16 7 C -0.12 -0.88 5.63 -26.65 -0.15 -1.03 16 8 C 0.06 0.48 5.46 -3.84 -0.02 0.46 16 9 N -0.52 -6.05 4.40 -236.12 -1.04 -7.09 16 10 C 0.04 0.44 5.45 -4.97 -0.03 0.41 16 11 C 0.50 8.75 7.50 -10.98 -0.08 8.67 16 12 O -0.54 -11.35 14.33 5.55 0.08 -11.27 16 13 N -0.71 -13.46 5.55 -61.47 -0.34 -13.80 16 14 C 0.22 5.28 4.50 -5.20 -0.02 5.26 16 15 C -0.54 -14.56 9.83 -34.44 -0.34 -14.90 16 16 H 0.08 2.20 7.84 -52.48 -0.41 1.79 16 17 C 0.08 2.14 5.47 -17.82 -0.10 2.04 16 18 N -0.89 -26.09 13.96 55.43 0.77 -25.32 16 19 Si 0.88 21.04 27.47 -169.99 -4.67 16.37 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.26 -6.20 6.54 56.52 0.37 -5.83 16 23 C 0.05 0.56 5.11 -3.84 -0.02 0.54 16 24 C -0.14 -1.19 5.66 -26.65 -0.15 -1.34 16 25 H 0.13 0.47 8.14 -51.92 -0.42 0.04 16 26 H 0.13 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.13 0.51 6.76 -51.93 -0.35 0.16 16 28 H 0.42 2.23 8.80 -34.47 -0.30 1.92 16 29 H 0.09 0.67 7.48 -51.93 -0.39 0.28 16 30 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.08 0.63 8.01 -51.93 -0.42 0.22 16 33 H 0.04 0.29 8.14 -51.93 -0.42 -0.13 16 34 H 0.10 1.05 7.99 -51.93 -0.41 0.64 16 35 H 0.06 0.64 8.12 -51.93 -0.42 0.22 16 36 H 0.40 6.56 8.32 -40.82 -0.34 6.22 16 37 H 0.02 0.63 7.20 -51.93 -0.37 0.25 16 38 H 0.02 0.47 7.57 -51.93 -0.39 0.08 16 39 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 40 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 1.51 5.78 -51.93 -0.30 1.21 16 42 H 0.09 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.07 0.46 5.88 -51.93 -0.31 0.15 16 LS Contribution 355.91 15.07 5.36 5.36 Total: -1.00 -36.65 355.91 -9.17 -45.82 By element: Atomic # 1 Polarization: 9.00 SS G_CDS: -6.55 Total: 2.46 kcal Atomic # 6 Polarization: -0.98 SS G_CDS: -0.07 Total: -1.06 kcal Atomic # 7 Polarization: -52.87 SS G_CDS: -0.63 Total: -53.51 kcal Atomic # 8 Polarization: -32.15 SS G_CDS: -1.96 Total: -34.11 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Atomic # 16 Polarization: 19.32 SS G_CDS: -0.65 Total: 18.66 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -36.65 -9.17 -45.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000040477952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.491 kcal (2) G-P(sol) polarization free energy of solvation -36.649 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.140 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.821 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds