Wall clock time and date at job start Fri Apr 10 2020 18:21:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81398 * 1 3 3 O 1.42098 * 110.54383 * 2 1 4 4 O 1.42104 * 110.54089 * 223.24628 * 2 1 3 5 5 N 1.65601 * 104.44984 * 111.62916 * 2 1 3 6 6 C 1.46499 * 120.00411 * 64.99683 * 5 2 1 7 7 H 1.09002 * 109.50216 * 25.08010 * 6 5 2 8 8 C 1.53115 * 109.50244 * 264.99954 * 6 5 2 9 9 C 1.53117 * 109.16360 * 182.40196 * 8 6 5 10 10 C 1.53038 * 109.27421 * 57.65205 * 9 8 6 11 11 N 1.46847 * 109.52866 * 300.82510 * 10 9 8 12 12 C 1.46899 * 111.00044 * 185.83761 * 11 10 9 13 13 C 1.50703 * 109.47107 * 66.04660 * 12 11 10 14 14 O 1.21278 * 119.99985 * 359.97438 * 13 12 11 15 15 N 1.34777 * 120.00161 * 180.02562 * 13 12 11 16 16 C 1.46496 * 120.00271 * 180.02562 * 15 13 12 17 17 C 1.50701 * 109.47174 * 179.97438 * 16 15 13 18 18 H 1.07998 * 120.00129 * 359.97438 * 17 16 15 19 19 C 1.37880 * 119.99861 * 180.02562 * 17 16 15 20 20 N 1.31512 * 119.99594 * 179.97438 * 19 17 16 21 21 Si 1.86797 * 119.99875 * 359.97438 * 19 17 16 22 22 H 1.48496 * 109.47116 * 90.00386 * 21 19 17 23 23 H 1.48510 * 109.46673 * 210.00091 * 21 19 17 24 24 H 1.48498 * 109.47559 * 329.99678 * 21 19 17 25 25 C 1.46844 * 111.19785 * 61.74095 * 11 10 9 26 26 H 1.09001 * 109.46939 * 308.37360 * 1 2 3 27 27 H 1.08998 * 109.47012 * 68.37294 * 1 2 3 28 28 H 1.09003 * 109.47039 * 188.37761 * 1 2 3 29 29 H 0.97005 * 119.99637 * 244.99534 * 5 2 1 30 30 H 1.09003 * 109.52163 * 62.49943 * 8 6 5 31 31 H 1.08996 * 109.52748 * 302.31408 * 8 6 5 32 32 H 1.09005 * 109.50250 * 297.72011 * 9 8 6 33 33 H 1.08994 * 109.50904 * 177.59446 * 9 8 6 34 34 H 1.09001 * 109.46416 * 180.80264 * 10 9 8 35 35 H 1.09007 * 109.45857 * 60.84399 * 10 9 8 36 36 H 1.09002 * 109.47043 * 186.04640 * 12 11 10 37 37 H 1.09001 * 109.47354 * 306.04701 * 12 11 10 38 38 H 0.97005 * 119.99463 * 359.97438 * 15 13 12 39 39 H 1.09002 * 109.47021 * 299.99722 * 16 15 13 40 40 H 1.09001 * 109.47001 * 59.99554 * 16 15 13 41 41 H 0.97002 * 119.99739 * 179.97438 * 20 19 17 42 42 H 1.09004 * 109.46477 * 58.27519 * 25 11 10 43 43 H 1.08993 * 109.46460 * 178.24692 * 25 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3126 -0.9693 -0.9117 5 7 2.2272 -0.5911 1.4907 6 6 1.8907 -1.9707 1.8508 7 1 1.7978 -2.5707 0.9455 8 6 0.5644 -1.9905 2.6156 9 6 0.2503 -3.4277 3.0400 10 6 1.4016 -3.9656 3.8929 11 7 2.6474 -3.9266 3.1165 12 6 3.7472 -4.5631 3.8537 13 6 3.4648 -6.0357 4.0045 14 8 2.4473 -6.5083 3.5438 15 7 4.3424 -6.8273 4.6523 16 6 4.0681 -8.2589 4.7985 17 6 5.1963 -8.9119 5.5548 18 1 6.0340 -8.3198 5.8924 19 6 5.1594 -10.2655 5.8148 20 7 6.1442 -10.8353 6.4744 21 14 3.7108 -11.2897 5.2302 22 1 3.9908 -11.8111 3.8683 23 1 3.5005 -12.4268 6.1621 24 1 2.4895 -10.4456 5.1958 25 6 2.9944 -2.5508 2.7381 26 1 -0.3633 0.6380 0.8057 27 1 -0.3633 0.3788 -0.9553 28 1 -0.3633 -1.0167 0.1497 29 1 2.6921 -0.0238 2.1255 30 1 -0.2327 -1.6183 1.9720 31 1 0.6445 -1.3587 3.5001 32 1 0.1319 -4.0512 2.1538 33 1 -0.6712 -3.4423 3.6218 34 1 1.1877 -4.9937 4.1849 35 1 1.5105 -3.3499 4.7857 36 1 4.6793 -4.4262 3.3053 37 1 3.8355 -4.1072 4.8398 38 1 5.1560 -6.4492 5.0211 39 1 3.1357 -8.3962 5.3462 40 1 3.9806 -8.7147 3.8122 41 1 6.1181 -11.7875 6.6577 42 1 3.0960 -1.9417 3.6364 43 1 3.9373 -2.5514 2.1914 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000041622365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:21:44 Heat of formation + Delta-G solvation = -102.156805 kcal Electronic energy + Delta-G solvation = -25080.439289 eV Core-core repulsion = 21287.848752 eV Total energy + Delta-G solvation = -3792.590537 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -39.88976 -38.47639 -37.43732 -36.31648 -35.38305 -34.22716 -32.90073 -32.33693 -30.00259 -29.44155 -28.67170 -26.77563 -23.48186 -23.14020 -21.80744 -20.43729 -19.91054 -19.63664 -18.05582 -17.41767 -16.90076 -16.62950 -16.09547 -15.85817 -15.42771 -15.14054 -15.04488 -14.57073 -14.28323 -14.02625 -13.94936 -13.78839 -13.62946 -13.54390 -12.92862 -12.77310 -12.54813 -12.47487 -12.38023 -12.32135 -12.07593 -11.77259 -11.65621 -11.47746 -11.19881 -11.04861 -10.95056 -10.82374 -10.66105 -9.98492 -9.83889 -9.51054 -9.18229 -8.78927 -8.38146 -8.13102 -6.22794 -4.25119 -0.13546 2.26462 3.20881 3.26653 3.32540 3.39403 3.40620 3.51822 3.80335 4.16976 4.24931 4.32337 4.35727 4.46641 4.52782 4.69462 4.88355 4.97958 5.11711 5.12559 5.15286 5.26132 5.27211 5.35007 5.43432 5.47893 5.51728 5.67577 5.68736 5.81282 6.07751 6.17006 6.54529 6.74674 6.89564 6.99852 7.06198 7.22275 7.38248 8.12871 8.50433 8.74265 8.93577 9.37385 10.89156 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.032364 B = 0.002324 C = 0.002278 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 864.959126 B =12044.989912 C =12289.933875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.676 4.676 2 S 2.615 3.385 3 O -0.962 6.962 4 O -0.952 6.952 5 N -1.114 6.114 6 C 0.149 3.851 7 H 0.105 0.895 8 C -0.145 4.145 9 C -0.113 4.113 10 C 0.046 3.954 11 N -0.517 5.517 12 C 0.037 3.963 13 C 0.501 3.499 14 O -0.540 6.540 15 N -0.707 5.707 16 C 0.222 3.778 17 C -0.544 4.544 18 H 0.079 0.921 19 C 0.077 3.923 20 N -0.893 5.893 21 Si 0.878 3.122 22 H -0.273 1.273 23 H -0.284 1.284 24 H -0.261 1.261 25 C 0.055 3.945 26 H 0.129 0.871 27 H 0.128 0.872 28 H 0.131 0.869 29 H 0.417 0.583 30 H 0.066 0.934 31 H 0.069 0.931 32 H 0.078 0.922 33 H 0.071 0.929 34 H 0.102 0.898 35 H 0.028 0.972 36 H 0.103 0.897 37 H 0.061 0.939 38 H 0.396 0.604 39 H 0.024 0.976 40 H 0.021 0.979 41 H 0.268 0.732 42 H 0.040 0.960 43 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.157 24.126 -8.213 28.237 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.825 4.825 2 S 2.706 3.294 3 O -0.952 6.952 4 O -0.942 6.942 5 N -0.873 5.873 6 C 0.041 3.959 7 H 0.123 0.877 8 C -0.184 4.184 9 C -0.152 4.152 10 C -0.081 4.081 11 N -0.242 5.242 12 C -0.094 4.094 13 C 0.285 3.715 14 O -0.419 6.419 15 N -0.357 5.357 16 C 0.100 3.900 17 C -0.582 4.582 18 H 0.097 0.903 19 C -0.127 4.127 20 N -0.530 5.530 21 Si 0.704 3.296 22 H -0.198 1.198 23 H -0.210 1.210 24 H -0.185 1.185 25 C -0.074 4.074 26 H 0.148 0.852 27 H 0.147 0.853 28 H 0.149 0.851 29 H 0.251 0.749 30 H 0.085 0.915 31 H 0.088 0.912 32 H 0.096 0.904 33 H 0.090 0.910 34 H 0.120 0.880 35 H 0.046 0.954 36 H 0.121 0.879 37 H 0.079 0.921 38 H 0.229 0.771 39 H 0.042 0.958 40 H 0.039 0.961 41 H 0.077 0.923 42 H 0.058 0.942 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -12.391 23.466 -9.713 28.258 hybrid contribution -0.512 0.122 1.362 1.461 sum -12.903 23.588 -8.350 28.153 Atomic orbital electron populations 1.30649 1.28475 1.11836 1.11576 1.04713 0.77580 0.73778 0.73319 1.93620 1.78028 1.37806 1.85787 1.93649 1.76831 1.61642 1.62078 1.55620 1.73967 1.21230 1.36434 1.20858 0.94263 0.80741 1.00003 0.87666 1.22292 0.96746 0.98481 1.00875 1.21521 0.97749 0.94758 1.01124 1.22342 0.88889 1.03280 0.93592 1.61443 1.02939 1.15819 1.43997 1.21977 0.95566 0.93559 0.98294 1.20311 0.84264 0.88000 0.78908 1.90619 1.26823 1.75824 1.48585 1.46176 1.23142 1.10748 1.55611 1.19467 0.97399 0.76426 0.96693 1.21096 1.05895 0.94292 1.36898 0.90283 1.24807 0.96101 0.97569 0.94215 1.69882 1.31667 1.11774 1.39653 0.86800 0.83498 0.80212 0.79055 1.19826 1.20959 1.18525 1.22251 0.98305 0.88745 0.98138 0.85209 0.85312 0.85070 0.74896 0.91550 0.91207 0.90376 0.91000 0.87972 0.95395 0.87935 0.92100 0.77093 0.95805 0.96132 0.92260 0.94201 0.89654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.68 -2.48 10.10 101.05 1.02 -1.46 16 2 S 2.61 18.67 6.08 -107.50 -0.65 18.01 16 3 O -0.96 -9.91 18.08 -57.54 -1.04 -10.95 16 4 O -0.95 -10.88 17.39 -57.54 -1.00 -11.88 16 5 N -1.11 -6.83 5.36 -4.82 -0.03 -6.86 16 6 C 0.15 1.16 2.85 -67.85 -0.19 0.97 16 7 H 0.11 0.95 7.48 -51.93 -0.39 0.56 16 8 C -0.14 -0.96 5.56 -26.61 -0.15 -1.11 16 9 C -0.11 -1.02 6.09 -26.65 -0.16 -1.18 16 10 C 0.05 0.54 5.11 -3.83 -0.02 0.52 16 11 N -0.52 -6.28 4.39 -236.11 -1.04 -7.32 16 12 C 0.04 0.47 5.45 -4.98 -0.03 0.44 16 13 C 0.50 8.97 7.50 -10.98 -0.08 8.89 16 14 O -0.54 -11.56 14.35 5.56 0.08 -11.48 16 15 N -0.71 -13.71 5.55 -61.47 -0.34 -14.05 16 16 C 0.22 5.35 4.50 -5.20 -0.02 5.32 16 17 C -0.54 -14.70 9.83 -34.44 -0.34 -15.04 16 18 H 0.08 2.22 7.84 -52.49 -0.41 1.81 16 19 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 20 N -0.89 -26.30 13.96 55.43 0.77 -25.52 16 21 Si 0.88 21.25 27.47 -169.99 -4.67 16.58 16 22 H -0.27 -6.54 7.11 56.52 0.40 -6.13 16 23 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 24 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 25 C 0.06 0.50 4.99 -3.83 -0.02 0.48 16 26 H 0.13 0.28 8.14 -51.92 -0.42 -0.15 16 27 H 0.13 0.33 8.14 -51.93 -0.42 -0.09 16 28 H 0.13 0.40 6.73 -51.92 -0.35 0.05 16 29 H 0.42 1.91 8.80 -34.47 -0.30 1.60 16 30 H 0.07 0.31 5.84 -51.93 -0.30 0.00 16 31 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 34 H 0.10 1.53 5.80 -51.93 -0.30 1.23 16 35 H 0.03 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.10 1.12 7.98 -51.93 -0.41 0.71 16 37 H 0.06 0.66 8.12 -51.93 -0.42 0.24 16 38 H 0.40 6.69 8.32 -40.82 -0.34 6.35 16 39 H 0.02 0.60 7.20 -51.93 -0.37 0.23 16 40 H 0.02 0.52 7.57 -51.93 -0.39 0.13 16 41 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 42 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 43 H 0.09 0.77 8.01 -51.93 -0.42 0.35 16 LS Contribution 355.84 15.07 5.36 5.36 Total: -1.00 -37.08 355.84 -9.18 -46.27 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: -6.54 Total: 1.95 kcal Atomic # 6 Polarization: -0.01 SS G_CDS: -0.09 Total: -0.10 kcal Atomic # 7 Polarization: -53.12 SS G_CDS: -0.63 Total: -53.75 kcal Atomic # 8 Polarization: -32.35 SS G_CDS: -1.96 Total: -34.31 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -4.67 Total: 16.58 kcal Atomic # 16 Polarization: 18.67 SS G_CDS: -0.65 Total: 18.01 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -37.08 -9.18 -46.27 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000041622365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.889 kcal (2) G-P(sol) polarization free energy of solvation -37.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.972 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.185 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds