Wall clock time and date at job start Fri Apr 10 2020 18:22:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42896 * 109.47585 * 2 1 4 4 C 1.35982 * 117.00545 * 179.97438 * 3 2 1 5 5 C 1.38694 * 119.99605 * 359.72759 * 4 3 2 6 6 C 1.38137 * 119.99804 * 179.76330 * 5 4 3 7 7 C 1.38694 * 119.99828 * 0.50919 * 6 5 4 8 8 O 1.35978 * 119.99884 * 179.72192 * 7 6 5 9 9 C 1.42902 * 117.00512 * 0.02562 * 8 7 6 10 10 C 1.52995 * 109.47390 * 180.02562 * 9 8 7 11 11 C 1.50700 * 109.46844 * 179.97438 * 10 9 8 12 12 O 1.21292 * 120.00308 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00278 * 179.97438 * 11 10 9 14 14 C 1.37099 * 120.00368 * 180.02562 * 13 11 10 15 15 H 1.08004 * 119.99328 * 224.28894 * 14 13 11 16 16 C 1.38943 * 120.00109 * 44.28900 * 14 13 11 17 17 N 1.31414 * 119.99660 * 18.20932 * 16 14 13 18 18 Si 1.86803 * 120.00166 * 198.20839 * 16 14 13 19 19 H 1.48499 * 109.46841 * 59.99835 * 18 16 14 20 20 H 1.48493 * 109.47028 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.46915 * 300.00139 * 18 16 14 22 22 C 1.46504 * 119.99731 * 0.02562 * 13 11 10 23 23 C 1.52996 * 117.50181 * 183.22522 * 22 13 11 24 24 C 1.53000 * 117.50217 * 114.59937 * 22 13 11 25 25 C 1.38698 * 120.00214 * 359.74771 * 7 6 5 26 26 C 1.38134 * 119.99730 * 359.97438 * 25 7 6 27 27 H 1.08993 * 109.47073 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.47071 * 300.00228 * 1 2 3 29 29 H 1.08997 * 109.46886 * 60.00023 * 1 2 3 30 30 H 1.08998 * 109.47071 * 239.99772 * 2 1 3 31 31 H 1.09002 * 109.47276 * 120.00217 * 2 1 3 32 32 H 1.07996 * 120.00340 * 0.02562 * 5 4 3 33 33 H 1.08001 * 119.99916 * 180.22686 * 6 5 4 34 34 H 1.09003 * 109.46569 * 300.00025 * 9 8 7 35 35 H 1.09001 * 109.46908 * 59.99756 * 9 8 7 36 36 H 1.09003 * 109.47178 * 299.99521 * 10 9 8 37 37 H 1.09001 * 109.47402 * 59.99927 * 10 9 8 38 38 H 0.97004 * 119.99610 * 174.92546 * 17 16 14 39 39 H 1.09003 * 115.54743 * 328.93046 * 22 13 11 40 40 H 1.09006 * 117.49404 * 359.97438 * 23 22 13 41 41 H 1.08999 * 117.50148 * 145.01873 * 23 22 13 42 42 H 1.09005 * 117.49637 * 214.98072 * 24 22 13 43 43 H 1.08994 * 117.49739 * 359.97350 * 24 22 13 44 44 H 1.08001 * 120.00025 * 179.97438 * 25 7 6 45 45 H 1.08001 * 119.99641 * 179.97438 * 26 25 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0064 1.3472 0.0000 4 6 3.3545 1.5254 0.0005 5 6 4.1993 0.4254 0.0068 6 6 5.5688 0.6064 0.0024 7 6 6.0989 1.8880 0.0024 8 8 7.4470 2.0661 0.0038 9 6 8.2571 0.8889 0.0046 10 6 9.7345 1.2864 0.0068 11 6 10.5886 0.0448 0.0083 12 8 10.0670 -1.0502 0.0072 13 7 11.9322 0.1511 0.0098 14 6 12.7093 -0.9784 0.0106 15 1 13.5662 -1.0437 0.6647 16 6 12.3944 -2.0389 -0.8300 17 7 11.6013 -1.8476 -1.8602 18 14 13.0983 -3.7366 -0.4957 19 1 12.6593 -4.1992 0.8454 20 1 12.6143 -4.6856 -1.5302 21 1 14.5814 -3.6744 -0.5368 22 6 12.5623 1.4737 0.0105 23 6 14.0895 1.5288 -0.0641 24 6 13.3748 1.8685 1.2454 25 6 5.2541 2.9880 0.0016 26 6 3.8847 2.8070 0.0002 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 3.7866 -0.5725 0.0108 33 1 6.2267 -0.2501 0.0035 34 1 8.0387 0.2983 0.8944 35 1 8.0406 0.2983 -0.8856 36 1 9.9531 1.8771 -0.8828 37 1 9.9507 1.8767 0.8972 38 1 11.4401 -2.5688 -2.4886 39 1 12.0046 2.2604 -0.4976 40 1 14.6254 0.5809 -0.1134 41 1 14.5368 2.3517 -0.6215 42 1 13.3519 2.9151 1.5494 43 1 13.4402 1.1444 2.0574 44 1 5.6670 3.9860 0.0020 45 1 3.2268 3.6636 -0.0001 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000065566043.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:22:30 Heat of formation + Delta-G solvation = -68.016996 kcal Electronic energy + Delta-G solvation = -26051.773593 eV Core-core repulsion = 22228.759861 eV Total energy + Delta-G solvation = -3823.013731 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 319.162 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.44180 -40.55043 -39.91410 -37.89077 -37.39903 -34.87932 -33.24072 -32.75043 -32.46130 -31.81764 -29.48047 -27.40614 -25.42796 -24.78875 -23.19341 -22.89832 -22.61725 -22.53092 -20.88519 -19.57986 -18.93170 -18.03325 -17.69560 -17.31905 -17.26361 -16.99438 -16.64430 -16.01322 -15.83147 -15.61915 -15.18194 -15.04686 -14.64064 -14.54574 -14.28607 -14.22861 -13.86479 -13.65515 -13.49641 -13.20443 -12.98398 -12.83493 -12.80677 -12.68111 -12.48786 -12.32367 -12.20745 -12.11950 -11.86878 -11.65603 -11.61285 -11.26812 -11.20886 -10.73716 -10.10373 -10.02922 -8.99464 -8.75469 -8.21876 -6.00243 0.22603 0.43254 1.35461 1.43921 1.47443 2.00604 2.23255 2.29356 2.39733 2.70503 3.11370 3.18277 3.36109 3.69372 3.80249 3.92374 3.98956 4.04645 4.07951 4.13031 4.15229 4.17354 4.29970 4.34889 4.40127 4.43492 4.46689 4.57101 4.71427 4.84243 4.84963 4.91380 4.91644 4.94399 5.06790 5.09069 5.18405 5.29686 5.31258 5.34628 5.46535 5.50471 5.57342 6.18697 6.28641 6.49008 7.01296 7.15417 7.66905 8.30647 8.86716 Molecular weight = 319.16amu Principal moments of inertia in cm(-1) A = 0.017069 B = 0.002622 C = 0.002318 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1639.962827 B =10676.497369 C =12074.647742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.043 3.957 3 O -0.327 6.327 4 C 0.083 3.917 5 C -0.172 4.172 6 C -0.182 4.182 7 C 0.076 3.924 8 O -0.321 6.321 9 C 0.096 3.904 10 C -0.115 4.115 11 C 0.471 3.529 12 O -0.588 6.588 13 N -0.440 5.440 14 C -0.357 4.357 15 H 0.079 0.921 16 C 0.022 3.978 17 N -0.871 5.871 18 Si 0.970 3.030 19 H -0.281 1.281 20 H -0.288 1.288 21 H -0.256 1.256 22 C 0.041 3.959 23 C -0.171 4.171 24 C -0.179 4.179 25 C -0.112 4.112 26 C -0.112 4.112 27 H 0.096 0.904 28 H 0.066 0.934 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.065 0.935 32 H 0.143 0.857 33 H 0.121 0.879 34 H 0.057 0.943 35 H 0.047 0.953 36 H 0.098 0.902 37 H 0.111 0.889 38 H 0.260 0.740 39 H 0.128 0.872 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.125 0.875 43 H 0.074 0.926 44 H 0.158 0.842 45 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.682 9.994 3.665 18.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.032 4.032 3 O -0.242 6.242 4 C 0.038 3.962 5 C -0.191 4.191 6 C -0.201 4.201 7 C 0.032 3.968 8 O -0.235 6.235 9 C 0.021 3.979 10 C -0.155 4.155 11 C 0.261 3.739 12 O -0.470 6.470 13 N -0.160 5.160 14 C -0.484 4.484 15 H 0.097 0.903 16 C -0.184 4.184 17 N -0.506 5.506 18 Si 0.795 3.205 19 H -0.207 1.207 20 H -0.214 1.214 21 H -0.180 1.180 22 C -0.064 4.064 23 C -0.208 4.208 24 C -0.217 4.217 25 C -0.130 4.130 26 C -0.131 4.131 27 H 0.115 0.885 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.139 0.861 34 H 0.075 0.925 35 H 0.065 0.935 36 H 0.116 0.884 37 H 0.129 0.871 38 H 0.069 0.931 39 H 0.145 0.855 40 H 0.099 0.901 41 H 0.136 0.864 42 H 0.143 0.857 43 H 0.093 0.907 44 H 0.176 0.824 45 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges -15.112 9.638 3.531 18.268 hybrid contribution 0.623 -1.830 -0.198 1.943 sum -14.489 7.809 3.333 16.794 Atomic orbital electron populations 1.21785 0.91101 1.04093 1.03393 1.23032 0.97157 0.81116 1.01869 1.86044 1.18189 1.30729 1.89197 1.19021 0.82791 0.94254 1.00132 1.21194 0.92842 0.99309 1.05728 1.21247 0.96381 0.96559 1.05935 1.19243 0.82924 0.94376 1.00299 1.85945 1.14478 1.33965 1.89157 1.22136 0.89432 0.85287 1.01084 1.21291 0.91680 0.97094 1.05472 1.20347 0.83267 0.89901 0.80430 1.90489 1.72757 1.30683 1.53101 1.42945 1.03647 1.04053 1.65399 1.19067 1.12541 0.94034 1.22784 0.90347 1.26058 0.95812 1.02974 0.93594 1.69930 1.35740 1.33564 1.11411 0.85372 0.78887 0.78763 0.77459 1.20731 1.21353 1.18042 1.22075 0.93563 0.87655 1.03123 1.23120 0.93750 1.03086 1.00870 1.23329 1.04360 1.02541 0.91513 1.20503 0.91298 0.98218 1.02998 1.20500 0.94035 0.95573 1.02954 0.88491 0.91535 0.91620 0.91763 0.91623 0.83931 0.86057 0.92498 0.93464 0.88403 0.87095 0.93133 0.85494 0.90071 0.86449 0.85655 0.90694 0.82395 0.82123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.65 10.28 71.98 0.74 -0.91 16 2 C 0.04 0.69 5.46 71.98 0.39 1.09 16 3 O -0.33 -7.19 10.14 -93.35 -0.95 -8.14 16 4 C 0.08 2.03 6.69 22.49 0.15 2.18 16 5 C -0.17 -4.47 9.03 22.35 0.20 -4.27 16 6 C -0.18 -5.57 9.03 22.35 0.20 -5.36 16 7 C 0.08 2.34 6.69 22.49 0.15 2.49 16 8 O -0.32 -10.73 10.14 -93.31 -0.95 -11.67 16 9 C 0.10 3.61 4.03 71.98 0.29 3.90 16 10 C -0.12 -4.39 4.69 29.85 0.14 -4.25 16 11 C 0.47 23.83 6.97 87.66 0.61 24.44 16 12 O -0.59 -35.00 13.74 -3.07 -0.04 -35.04 16 13 N -0.44 -21.83 2.83 -613.13 -1.74 -23.56 16 14 C -0.36 -19.53 7.92 84.04 0.67 -18.87 16 15 H 0.08 4.14 7.26 -2.91 -0.02 4.12 16 16 C 0.02 1.24 4.39 84.92 0.37 1.62 16 17 N -0.87 -52.78 11.74 21.66 0.25 -52.53 16 18 Si 0.97 45.60 29.59 68.60 2.03 47.63 16 19 H -0.28 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.29 -13.45 7.11 99.48 0.71 -12.75 16 21 H -0.26 -11.00 7.11 99.48 0.71 -10.29 16 22 C 0.04 1.53 5.87 44.99 0.26 1.80 16 23 C -0.17 -5.71 9.80 30.59 0.30 -5.41 16 24 C -0.18 -5.50 10.36 30.59 0.32 -5.18 16 25 C -0.11 -2.74 9.98 22.36 0.22 -2.52 16 26 C -0.11 -2.51 9.98 22.35 0.22 -2.29 16 27 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 30 H 0.06 0.99 7.67 -2.39 -0.02 0.97 16 31 H 0.07 0.99 7.65 -2.39 -0.02 0.97 16 32 H 0.14 3.11 6.29 -2.91 -0.02 3.09 16 33 H 0.12 3.99 6.29 -2.91 -0.02 3.97 16 34 H 0.06 2.20 7.62 -2.39 -0.02 2.18 16 35 H 0.05 1.96 7.62 -2.39 -0.02 1.94 16 36 H 0.10 3.46 7.57 -2.39 -0.02 3.44 16 37 H 0.11 3.62 8.11 -2.39 -0.02 3.60 16 38 H 0.26 15.21 8.32 -92.71 -0.77 14.44 16 39 H 0.13 4.14 6.96 -2.39 -0.02 4.12 16 40 H 0.08 3.15 6.72 -2.38 -0.02 3.14 16 41 H 0.12 3.13 8.14 -2.39 -0.02 3.11 16 42 H 0.13 2.88 8.14 -2.38 -0.02 2.86 16 43 H 0.07 2.56 8.14 -2.39 -0.02 2.54 16 44 H 0.16 3.11 8.06 -2.91 -0.02 3.08 16 45 H 0.16 2.69 8.06 -2.91 -0.02 2.66 16 Total: -1.00 -73.05 373.70 4.84 -68.21 By element: Atomic # 1 Polarization: 25.66 SS G_CDS: 0.99 Total: 26.65 kcal Atomic # 6 Polarization: -16.79 SS G_CDS: 5.24 Total: -11.55 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.48 Total: -76.09 kcal Atomic # 8 Polarization: -52.92 SS G_CDS: -1.93 Total: -54.85 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 2.03 Total: 47.63 kcal Total: -73.05 4.84 -68.21 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000065566043.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.196 kcal (2) G-P(sol) polarization free energy of solvation -73.054 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.017 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds