Wall clock time and date at job start Fri Apr 10 2020 18:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81397 * 109.47267 * 2 1 4 4 O 1.42098 * 110.54172 * 68.37462 * 3 2 1 5 5 O 1.42097 * 110.54166 * 291.62250 * 3 2 1 6 6 N 1.65605 * 104.45020 * 179.97438 * 3 2 1 7 7 C 1.46502 * 119.99873 * 269.99839 * 6 3 2 8 8 C 1.46499 * 119.99782 * 89.99811 * 6 3 2 9 9 C 1.50701 * 109.46992 * 94.99996 * 8 6 3 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 6 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.96693 * 53.32140 * 13 12 11 15 15 C 1.53947 * 113.77034 * 185.00211 * 13 12 11 16 16 C 1.53948 * 86.28996 * 137.90963 * 15 13 12 17 17 N 1.47582 * 113.76765 * 281.49507 * 13 12 11 18 18 C 1.36936 * 134.49436 * 41.06574 * 17 13 12 19 19 H 1.07996 * 119.99897 * 359.97438 * 18 17 13 20 20 C 1.38811 * 119.99930 * 179.97438 * 18 17 13 21 21 N 1.31612 * 120.00518 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99799 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47000 * 89.99498 * 22 20 18 24 24 H 1.48494 * 109.47023 * 209.99505 * 22 20 18 25 25 H 1.48497 * 109.46890 * 329.99625 * 22 20 18 26 26 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46842 * 299.99919 * 1 2 3 28 28 H 1.08990 * 109.46967 * 59.99961 * 1 2 3 29 29 H 1.08996 * 109.47095 * 239.99602 * 2 1 3 30 30 H 1.09007 * 109.47050 * 120.00158 * 2 1 3 31 31 H 1.08992 * 109.47370 * 269.99952 * 7 6 3 32 32 H 1.09001 * 109.47101 * 30.00374 * 7 6 3 33 33 H 1.09006 * 109.46957 * 149.99784 * 7 6 3 34 34 H 1.09002 * 109.47391 * 334.99987 * 8 6 3 35 35 H 1.09001 * 109.46813 * 215.00043 * 8 6 3 36 36 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 38 38 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 39 39 H 1.09001 * 113.73820 * 252.24905 * 15 13 12 40 40 H 1.08995 * 113.74502 * 23.56160 * 15 13 12 41 41 H 1.09001 * 113.77415 * 90.69539 * 16 15 13 42 42 H 1.09002 * 113.76805 * 221.98039 * 16 15 13 43 43 H 0.97001 * 120.00604 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3437 -1.2370 6 7 3.7844 1.5652 0.0007 7 6 4.5135 1.5013 1.2698 8 6 4.5146 1.5009 -1.2677 9 6 4.9956 2.8794 -1.6409 10 8 4.7529 3.8226 -0.9181 11 7 5.6965 3.0639 -2.7772 12 6 6.1646 4.4039 -3.1396 13 6 6.9271 4.3368 -4.4644 14 1 6.3561 3.8582 -5.2600 15 6 7.5694 5.6730 -4.8791 16 6 8.7981 4.8407 -5.2883 17 7 8.3068 3.8300 -4.3316 18 6 8.8950 2.8254 -3.6104 19 1 8.2958 2.2057 -2.9599 20 6 10.2612 2.6038 -3.7157 21 7 10.9913 3.3587 -4.5089 22 14 11.0637 1.2337 -2.7313 23 1 11.0502 -0.0204 -3.5266 24 1 12.4665 1.6059 -2.4176 25 1 10.3120 1.0266 -1.4676 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 4.7844 2.5091 1.5844 32 1 3.8814 1.0411 2.0292 33 1 5.4174 0.9060 1.1399 34 1 3.8543 1.1228 -2.0483 35 1 5.3701 0.8340 -1.1610 36 1 5.8910 2.3095 -3.3550 37 1 5.3093 5.0711 -3.2465 38 1 6.8248 4.7817 -2.3588 39 1 7.0695 6.1587 -5.7172 40 1 7.7552 6.3485 -4.0441 41 1 8.7783 4.5091 -6.3265 42 1 9.7488 5.2918 -5.0040 43 1 11.9460 3.2036 -4.5827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754498224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:13 Heat of formation + Delta-G solvation = -44.066797 kcal Electronic energy + Delta-G solvation = -25627.198066 eV Core-core repulsion = 21837.126501 eV Total energy + Delta-G solvation = -3790.071565 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -39.48528 -37.96404 -37.27536 -36.12532 -35.83201 -33.98505 -33.52234 -32.20168 -29.48400 -27.94206 -27.24328 -25.32924 -24.16983 -23.37562 -22.10516 -20.39556 -19.22138 -18.92854 -17.96102 -17.39627 -16.73699 -16.60519 -16.20315 -15.68185 -15.31287 -14.93186 -14.66572 -14.30607 -14.20274 -13.89308 -13.62629 -13.38989 -13.28355 -12.95045 -12.87672 -12.82940 -12.36539 -12.20421 -11.97160 -11.95228 -11.78084 -11.56804 -11.40722 -11.10616 -11.02072 -10.88310 -10.74955 -10.57079 -10.14422 -9.92940 -9.75671 -9.49112 -8.94266 -8.81520 -8.54300 -6.90685 -5.78250 -3.10600 -0.02259 2.37933 2.95184 3.34189 3.38255 3.42119 3.53006 3.71510 3.86371 4.18417 4.40232 4.40726 4.46249 4.76860 4.97510 5.00616 5.12106 5.17017 5.21294 5.27101 5.38054 5.40195 5.48063 5.63254 5.68204 5.74884 5.85577 5.93475 6.13725 6.20076 6.34425 6.42420 6.63290 6.73400 6.92102 7.23989 7.41549 7.57948 7.90849 7.96611 8.58662 9.02121 9.69166 10.58610 11.38626 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.003351 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.267558 B = 8354.835367 C = 9287.346269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.637 4.637 3 S 2.609 3.391 4 O -0.948 6.948 5 O -0.945 6.945 6 N -0.984 5.984 7 C 0.095 3.905 8 C 0.104 3.896 9 C 0.494 3.506 10 O -0.537 6.537 11 N -0.713 5.713 12 C 0.124 3.876 13 C 0.126 3.874 14 H 0.050 0.950 15 C -0.156 4.156 16 C 0.159 3.841 17 N -0.603 5.603 18 C -0.218 4.218 19 H 0.078 0.922 20 C -0.008 4.008 21 N -0.920 5.920 22 Si 0.908 3.092 23 H -0.290 1.290 24 H -0.291 1.291 25 H -0.282 1.282 26 H 0.081 0.919 27 H 0.071 0.929 28 H 0.073 0.927 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.066 0.934 32 H 0.070 0.930 33 H 0.073 0.927 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.402 0.598 37 H 0.060 0.940 38 H 0.071 0.929 39 H 0.053 0.947 40 H 0.076 0.924 41 H 0.026 0.974 42 H 0.073 0.927 43 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.414 -8.357 6.540 20.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.766 4.766 3 S 2.700 3.300 4 O -0.938 6.938 5 O -0.935 6.935 6 N -0.821 5.821 7 C -0.050 4.050 8 C -0.025 4.025 9 C 0.277 3.723 10 O -0.414 6.414 11 N -0.365 5.365 12 C -0.001 4.001 13 C 0.019 3.981 14 H 0.068 0.932 15 C -0.195 4.195 16 C 0.034 3.966 17 N -0.329 5.329 18 C -0.346 4.346 19 H 0.096 0.904 20 C -0.205 4.205 21 N -0.567 5.567 22 Si 0.739 3.261 23 H -0.217 1.217 24 H -0.217 1.217 25 H -0.208 1.208 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.092 0.908 29 H 0.150 0.850 30 H 0.149 0.851 31 H 0.085 0.915 32 H 0.088 0.912 33 H 0.092 0.908 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.236 0.764 37 H 0.079 0.921 38 H 0.090 0.910 39 H 0.072 0.928 40 H 0.095 0.905 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -17.755 -7.069 7.203 20.423 hybrid contribution 0.933 -2.036 0.087 2.242 sum -16.822 -9.105 7.290 20.470 Atomic orbital electron populations 1.21504 0.90506 1.05006 1.03578 1.30615 1.07237 1.27126 1.11572 1.05305 0.72824 0.77217 0.74612 1.93591 1.83008 1.71956 1.45281 1.93616 1.82926 1.71859 1.45080 1.57077 1.24417 1.89526 1.11078 1.21515 0.97211 1.03310 0.82958 1.21169 0.99325 0.96155 0.85878 1.20942 0.78591 0.91324 0.81449 1.90675 1.56913 1.42831 1.51010 1.45919 1.55020 1.11887 1.23633 1.21747 0.97329 0.82885 0.98103 1.22508 0.88562 0.93644 0.93417 0.93234 1.23771 0.99489 0.96004 1.00252 1.22193 0.95700 0.86730 0.92004 1.46078 1.01020 1.37505 1.48333 1.18931 0.90762 1.07251 1.17632 0.90382 1.24768 0.96241 0.99582 0.99900 1.69812 1.05641 1.40507 1.40722 0.86190 0.78995 0.81568 0.79388 1.21726 1.21685 1.20766 0.90011 0.90960 0.90847 0.85014 0.85097 0.91481 0.91152 0.90805 0.87397 0.87006 0.76396 0.92149 0.91030 0.92792 0.90517 0.95592 0.90878 0.93688 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.92 37.16 0.37 -0.55 16 2 C -0.64 -4.10 6.90 37.16 0.26 -3.84 16 3 S 2.61 30.16 5.32 -107.50 -0.57 29.59 16 4 O -0.95 -13.90 17.09 -57.54 -0.98 -14.88 16 5 O -0.94 -14.19 16.99 -57.54 -0.98 -15.16 16 6 N -0.98 -11.20 2.61 -123.05 -0.32 -11.52 16 7 C 0.10 0.96 10.22 59.85 0.61 1.57 16 8 C 0.10 1.19 5.76 -5.19 -0.03 1.16 16 9 C 0.49 8.21 7.89 -10.98 -0.09 8.13 16 10 O -0.54 -11.08 16.42 5.56 0.09 -10.99 16 11 N -0.71 -11.80 5.53 -60.30 -0.33 -12.13 16 12 C 0.12 2.28 5.54 -4.04 -0.02 2.26 16 13 C 0.13 2.41 4.33 -66.86 -0.29 2.12 16 14 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 15 C -0.16 -2.87 7.86 -25.80 -0.20 -3.07 16 16 C 0.16 3.62 7.51 -2.97 -0.02 3.60 16 17 N -0.60 -14.46 3.57 -170.74 -0.61 -15.07 16 18 C -0.22 -5.70 10.51 -15.06 -0.16 -5.86 16 19 H 0.08 1.92 7.80 -52.49 -0.41 1.51 16 20 C -0.01 -0.23 5.50 -17.43 -0.10 -0.32 16 21 N -0.92 -26.65 11.39 55.49 0.63 -26.02 16 22 Si 0.91 21.39 29.55 -169.99 -5.02 16.37 16 23 H -0.29 -6.77 7.11 56.52 0.40 -6.36 16 24 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 25 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 26 H 0.08 0.37 8.14 -51.93 -0.42 -0.06 16 27 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 29 H 0.13 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.13 0.59 8.14 -51.92 -0.42 0.17 16 31 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.07 0.53 7.79 -51.93 -0.40 0.13 16 33 H 0.07 0.60 7.94 -51.93 -0.41 0.19 16 34 H 0.11 0.92 7.61 -51.93 -0.40 0.53 16 35 H 0.11 0.97 7.96 -51.93 -0.41 0.56 16 36 H 0.40 5.93 8.47 -40.82 -0.35 5.59 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 1.50 8.14 -51.93 -0.42 1.08 16 39 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.40 8.10 -51.93 -0.42 0.98 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.86 7.16 -51.93 -0.37 1.49 16 43 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 LS Contribution 372.44 15.07 5.61 5.61 Total: -1.00 -37.60 372.44 -9.12 -46.72 By element: Atomic # 1 Polarization: 9.27 SS G_CDS: -6.96 Total: 2.32 kcal Atomic # 6 Polarization: 4.86 SS G_CDS: 0.33 Total: 5.19 kcal Atomic # 7 Polarization: -64.11 SS G_CDS: -0.63 Total: -64.75 kcal Atomic # 8 Polarization: -39.17 SS G_CDS: -1.87 Total: -41.04 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Atomic # 16 Polarization: 30.16 SS G_CDS: -0.57 Total: 29.59 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -37.60 -9.12 -46.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754498224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.651 kcal (2) G-P(sol) polarization free energy of solvation -37.602 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -34.952 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds