Wall clock time and date at job start Fri Apr 10 2020 18:18:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 S 1.81397 * 109.47267 * 2 1 4 4 O 1.42098 * 110.54172 * 68.37462 * 3 2 1 5 5 O 1.42097 * 110.54166 * 291.62250 * 3 2 1 6 6 N 1.65605 * 104.45020 * 179.97438 * 3 2 1 7 7 C 1.46502 * 119.99873 * 269.99839 * 6 3 2 8 8 C 1.46499 * 119.99782 * 89.99811 * 6 3 2 9 9 C 1.50701 * 109.46992 * 94.99996 * 8 6 3 10 10 O 1.21280 * 119.99781 * 0.02562 * 9 8 6 11 11 N 1.34780 * 119.99795 * 179.97438 * 9 8 6 12 12 C 1.46497 * 119.99566 * 180.02562 * 11 9 8 13 13 C 1.52997 * 109.46983 * 180.02562 * 12 11 9 14 14 H 1.09002 * 112.96693 * 53.32140 * 13 12 11 15 15 C 1.53947 * 113.77034 * 185.00211 * 13 12 11 16 16 C 1.53948 * 86.28996 * 137.90963 * 15 13 12 17 17 N 1.47582 * 113.76765 * 281.49507 * 13 12 11 18 18 C 1.36936 * 134.49436 * 41.06574 * 17 13 12 19 19 H 1.07996 * 119.99897 * 359.97438 * 18 17 13 20 20 C 1.38811 * 119.99930 * 179.97438 * 18 17 13 21 21 N 1.31612 * 120.00518 * 359.97438 * 20 18 17 22 22 Si 1.86810 * 119.99799 * 179.97438 * 20 18 17 23 23 H 1.48504 * 109.47000 * 89.99498 * 22 20 18 24 24 H 1.48494 * 109.47023 * 209.99505 * 22 20 18 25 25 H 1.48497 * 109.46890 * 329.99625 * 22 20 18 26 26 H 1.09004 * 109.46864 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.46842 * 299.99919 * 1 2 3 28 28 H 1.08990 * 109.46967 * 59.99961 * 1 2 3 29 29 H 1.08996 * 109.47095 * 239.99602 * 2 1 3 30 30 H 1.09007 * 109.47050 * 120.00158 * 2 1 3 31 31 H 1.08992 * 109.47370 * 269.99952 * 7 6 3 32 32 H 1.09001 * 109.47101 * 30.00374 * 7 6 3 33 33 H 1.09006 * 109.46957 * 149.99784 * 7 6 3 34 34 H 1.09002 * 109.47391 * 334.99987 * 8 6 3 35 35 H 1.09001 * 109.46813 * 215.00043 * 8 6 3 36 36 H 0.96995 * 120.00011 * 0.02562 * 11 9 8 37 37 H 1.09001 * 109.47487 * 300.00114 * 12 11 9 38 38 H 1.09002 * 109.47182 * 60.00342 * 12 11 9 39 39 H 1.09001 * 113.73820 * 252.24905 * 15 13 12 40 40 H 1.08995 * 113.74502 * 23.56160 * 15 13 12 41 41 H 1.09001 * 113.77415 * 90.69539 * 16 15 13 42 42 H 1.09002 * 113.76805 * 221.98039 * 16 15 13 43 43 H 0.97001 * 120.00604 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3438 1.2370 5 8 1.8386 2.3437 -1.2370 6 7 3.7844 1.5652 0.0007 7 6 4.5135 1.5013 1.2698 8 6 4.5146 1.5009 -1.2677 9 6 4.9956 2.8794 -1.6409 10 8 4.7529 3.8226 -0.9181 11 7 5.6965 3.0639 -2.7772 12 6 6.1646 4.4039 -3.1396 13 6 6.9271 4.3368 -4.4644 14 1 6.3561 3.8582 -5.2600 15 6 7.5694 5.6730 -4.8791 16 6 8.7981 4.8407 -5.2883 17 7 8.3068 3.8300 -4.3316 18 6 8.8950 2.8254 -3.6104 19 1 8.2958 2.2057 -2.9599 20 6 10.2612 2.6038 -3.7157 21 7 10.9913 3.3587 -4.5089 22 14 11.0637 1.2337 -2.7313 23 1 11.0502 -0.0204 -3.5266 24 1 12.4665 1.6059 -2.4176 25 1 10.3120 1.0266 -1.4676 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5138 -0.8899 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5139 0.8900 31 1 4.7844 2.5091 1.5844 32 1 3.8814 1.0411 2.0292 33 1 5.4174 0.9060 1.1399 34 1 3.8543 1.1228 -2.0483 35 1 5.3701 0.8340 -1.1610 36 1 5.8910 2.3095 -3.3550 37 1 5.3093 5.0711 -3.2465 38 1 6.8248 4.7817 -2.3588 39 1 7.0695 6.1587 -5.7172 40 1 7.7552 6.3485 -4.0441 41 1 8.7783 4.5091 -6.3265 42 1 9.7488 5.2918 -5.0040 43 1 11.9460 3.2036 -4.5827 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754498224.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:13 Heat of formation + Delta-G solvation = -74.630389 kcal Electronic energy + Delta-G solvation = -25628.523403 eV Core-core repulsion = 21837.126501 eV Total energy + Delta-G solvation = -3791.396902 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -40.82096 -39.58905 -38.24173 -37.08532 -36.77233 -35.44070 -34.16600 -34.03079 -30.64110 -29.81562 -28.51041 -26.21667 -25.26678 -24.76786 -23.64240 -21.71264 -20.84672 -19.90640 -18.96909 -18.67571 -18.07984 -17.63384 -17.24101 -17.05095 -16.80965 -16.18643 -15.86709 -15.52591 -15.47903 -15.03440 -14.93597 -14.70810 -14.20146 -13.96365 -13.94710 -13.57285 -13.41220 -13.33777 -13.21851 -13.19661 -12.92043 -12.69753 -12.61863 -12.54147 -12.48172 -12.39728 -12.30718 -11.82671 -11.59519 -11.50488 -11.39473 -11.08937 -10.79185 -10.00356 -9.95021 -8.85779 -7.82476 -5.14722 -0.81791 1.47304 1.49923 1.55236 1.57382 1.70154 2.30719 2.52026 2.94683 3.09572 3.36041 3.42555 3.55378 3.76774 3.87780 3.90273 4.03620 4.17099 4.25299 4.36612 4.38403 4.45097 4.62199 4.64887 4.70976 4.72840 4.82712 4.88135 4.91760 5.03720 5.06332 5.11315 5.12491 5.36215 5.38948 5.51164 5.63973 5.76256 6.00623 6.63951 6.98531 7.32195 7.69545 8.64308 9.34820 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.018163 B = 0.003351 C = 0.003014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1541.267558 B = 8354.835367 C = 9287.346269 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.596 4.596 3 S 2.592 3.408 4 O -0.995 6.995 5 O -0.992 6.992 6 N -0.988 5.988 7 C 0.089 3.911 8 C 0.105 3.895 9 C 0.482 3.518 10 O -0.587 6.587 11 N -0.711 5.711 12 C 0.133 3.867 13 C 0.135 3.865 14 H 0.074 0.926 15 C -0.135 4.135 16 C 0.151 3.849 17 N -0.628 5.628 18 C -0.212 4.212 19 H 0.092 0.908 20 C -0.076 4.076 21 N -0.958 5.958 22 Si 0.972 3.028 23 H -0.284 1.284 24 H -0.305 1.305 25 H -0.267 1.267 26 H 0.110 0.890 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.164 0.836 30 H 0.162 0.838 31 H 0.028 0.972 32 H 0.095 0.905 33 H 0.098 0.902 34 H 0.141 0.859 35 H 0.147 0.853 36 H 0.412 0.588 37 H 0.069 0.931 38 H 0.039 0.961 39 H 0.092 0.908 40 H 0.074 0.926 41 H 0.023 0.977 42 H 0.037 0.963 43 H 0.244 0.756 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.307 -11.515 6.735 23.467 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.730 4.730 3 S 2.690 3.310 4 O -0.986 6.986 5 O -0.982 6.982 6 N -0.824 5.824 7 C -0.056 4.056 8 C -0.024 4.024 9 C 0.268 3.732 10 O -0.467 6.467 11 N -0.363 5.363 12 C 0.007 3.993 13 C 0.029 3.971 14 H 0.091 0.909 15 C -0.173 4.173 16 C 0.026 3.974 17 N -0.355 5.355 18 C -0.340 4.340 19 H 0.110 0.890 20 C -0.268 4.268 21 N -0.608 5.608 22 Si 0.801 3.199 23 H -0.211 1.211 24 H -0.232 1.232 25 H -0.191 1.191 26 H 0.129 0.871 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.182 0.818 30 H 0.180 0.820 31 H 0.047 0.953 32 H 0.114 0.886 33 H 0.116 0.884 34 H 0.158 0.842 35 H 0.165 0.835 36 H 0.248 0.752 37 H 0.087 0.913 38 H 0.057 0.943 39 H 0.110 0.890 40 H 0.093 0.907 41 H 0.041 0.959 42 H 0.055 0.945 43 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges -19.674 -10.193 7.395 23.359 hybrid contribution 1.403 -1.054 0.023 1.755 sum -18.271 -11.246 7.418 22.701 Atomic orbital electron populations 1.21729 0.90198 1.06744 1.03543 1.30283 1.07160 1.20773 1.14767 1.05584 0.72853 0.79650 0.72906 1.93527 1.83534 1.74981 1.46535 1.93549 1.83476 1.74902 1.46317 1.57024 1.24374 1.89636 1.11331 1.21641 0.98853 1.01775 0.83313 1.21428 1.01297 0.92906 0.86809 1.22078 0.77470 0.93198 0.80466 1.90657 1.58637 1.45020 1.52389 1.45913 1.54864 1.11398 1.24121 1.21464 0.96899 0.84335 0.96571 1.22640 0.86789 0.93505 0.94177 0.90871 1.23587 0.96913 0.95569 1.01274 1.22142 0.95971 0.87679 0.91644 1.46418 1.03482 1.37212 1.48355 1.19388 0.90985 1.06811 1.16864 0.89049 1.25589 0.97189 1.02292 1.01723 1.70018 1.05179 1.42603 1.43045 0.85170 0.77185 0.78950 0.78615 1.21101 1.23223 1.19135 0.87138 0.91220 0.91113 0.81827 0.82034 0.95272 0.88636 0.88375 0.84175 0.83502 0.75174 0.91270 0.94279 0.88963 0.90737 0.95893 0.94450 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.45 9.92 71.98 0.71 -0.73 16 2 C -0.60 -5.00 6.90 71.98 0.50 -4.50 16 3 S 2.59 56.50 5.32 -56.49 -0.30 56.20 16 4 O -1.00 -29.46 17.09 -127.65 -2.18 -31.65 16 5 O -0.99 -29.42 16.99 -127.65 -2.17 -31.59 16 6 N -0.99 -20.57 2.61 -543.22 -1.42 -21.98 16 7 C 0.09 1.67 10.22 127.77 1.31 2.98 16 8 C 0.10 2.08 5.76 85.63 0.49 2.58 16 9 C 0.48 15.57 7.89 87.66 0.69 16.26 16 10 O -0.59 -24.69 16.42 -3.03 -0.05 -24.74 16 11 N -0.71 -22.49 5.53 -463.06 -2.56 -25.05 16 12 C 0.13 4.78 5.54 86.38 0.48 5.26 16 13 C 0.13 4.95 4.33 45.09 0.20 5.15 16 14 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 15 C -0.13 -4.77 7.86 31.26 0.25 -4.52 16 16 C 0.15 6.95 7.51 86.48 0.65 7.60 16 17 N -0.63 -29.92 3.57 -694.11 -2.48 -32.40 16 18 C -0.21 -10.99 10.51 84.03 0.88 -10.11 16 19 H 0.09 4.36 7.80 -2.91 -0.02 4.33 16 20 C -0.08 -4.17 5.50 84.86 0.47 -3.71 16 21 N -0.96 -57.12 11.39 21.65 0.25 -56.87 16 22 Si 0.97 44.08 29.55 68.60 2.03 46.11 16 23 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 24 H -0.30 -14.42 7.11 99.48 0.71 -13.72 16 25 H -0.27 -11.25 7.11 99.48 0.71 -10.54 16 26 H 0.11 0.45 8.14 -2.39 -0.02 0.43 16 27 H 0.07 0.67 8.14 -2.38 -0.02 0.65 16 28 H 0.07 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.16 0.49 8.14 -2.39 -0.02 0.47 16 30 H 0.16 0.53 8.14 -2.39 -0.02 0.51 16 31 H 0.03 0.75 8.14 -2.39 -0.02 0.73 16 32 H 0.10 1.25 7.79 -2.39 -0.02 1.23 16 33 H 0.10 1.32 7.94 -2.38 -0.02 1.30 16 34 H 0.14 1.87 7.61 -2.39 -0.02 1.85 16 35 H 0.15 1.91 7.96 -2.39 -0.02 1.89 16 36 H 0.41 11.17 8.47 -92.71 -0.79 10.39 16 37 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 38 H 0.04 1.66 8.14 -2.39 -0.02 1.64 16 39 H 0.09 2.60 8.14 -2.39 -0.02 2.58 16 40 H 0.07 2.68 8.10 -2.39 -0.02 2.66 16 41 H 0.02 1.07 8.14 -2.39 -0.02 1.05 16 42 H 0.04 1.97 7.16 -2.39 -0.02 1.95 16 43 H 0.24 14.29 8.31 -92.71 -0.77 13.52 16 Total: -1.00 -87.08 372.44 -2.05 -89.12 By element: Atomic # 1 Polarization: 16.38 SS G_CDS: 0.22 Total: 16.60 kcal Atomic # 6 Polarization: 9.63 SS G_CDS: 6.62 Total: 16.25 kcal Atomic # 7 Polarization: -130.09 SS G_CDS: -6.21 Total: -136.31 kcal Atomic # 8 Polarization: -83.57 SS G_CDS: -4.40 Total: -87.97 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 56.50 SS G_CDS: -0.30 Total: 56.20 kcal Total: -87.08 -2.05 -89.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754498224.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.492 kcal (2) G-P(sol) polarization free energy of solvation -87.077 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.585 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.123 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds