Wall clock time and date at job start Fri Apr 10 2020 18:18:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 S 1.65597 * 120.00426 * 2 1 4 4 O 1.42108 * 104.27228 * 308.92235 * 3 2 1 5 5 O 1.42102 * 104.28011 * 181.07261 * 3 2 1 6 6 C 1.81393 * 104.45193 * 64.99708 * 3 2 1 7 7 C 1.52999 * 109.47092 * 180.02562 * 6 3 2 8 8 C 1.50697 * 109.47301 * 179.97438 * 7 6 3 9 9 O 1.21289 * 119.99700 * 359.97438 * 8 7 6 10 10 N 1.34780 * 120.00483 * 179.97438 * 8 7 6 11 11 C 1.47743 * 125.81887 * 359.90665 * 10 8 7 12 12 C 1.54909 * 104.83995 * 155.82587 * 11 10 8 13 13 H 1.08994 * 111.00889 * 279.01887 * 12 11 10 14 14 N 1.46498 * 111.00162 * 155.16578 * 12 11 10 15 15 C 1.36942 * 120.00022 * 92.80865 * 14 12 11 16 16 H 1.08006 * 119.99757 * 0.02562 * 15 14 12 17 17 C 1.38810 * 120.00359 * 179.97438 * 15 14 12 18 18 N 1.31616 * 120.00164 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99855 * 179.97438 * 17 15 14 20 20 H 1.48497 * 109.47321 * 60.00419 * 19 17 15 21 21 H 1.48503 * 109.47028 * 180.02562 * 19 17 15 22 22 H 1.48500 * 109.47365 * 300.00161 * 19 17 15 23 23 C 1.55159 * 101.57990 * 37.09908 * 12 11 10 24 24 H 1.08999 * 110.72303 * 82.85766 * 23 12 11 25 25 C 1.53005 * 110.87083 * 206.06082 * 23 12 11 26 26 C 1.47020 * 125.64983 * 179.97438 * 10 8 7 27 27 H 1.09004 * 109.46753 * 300.00667 * 1 2 3 28 28 H 1.09007 * 109.46544 * 60.00376 * 1 2 3 29 29 H 1.08995 * 109.47578 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99806 * 179.97438 * 2 1 3 31 31 H 1.08994 * 109.46931 * 60.00175 * 6 3 2 32 32 H 1.09003 * 109.46941 * 299.99787 * 6 3 2 33 33 H 1.09004 * 109.47321 * 60.00104 * 7 6 3 34 34 H 1.08999 * 109.46995 * 300.00018 * 7 6 3 35 35 H 1.09003 * 110.29227 * 37.02448 * 11 10 8 36 36 H 1.08996 * 110.53057 * 274.75660 * 11 10 8 37 37 H 0.96998 * 120.00750 * 272.81024 * 14 12 11 38 38 H 0.96996 * 120.00537 * 179.97438 * 18 17 15 39 39 H 1.08998 * 109.46692 * 175.06169 * 25 23 12 40 40 H 1.08997 * 109.47070 * 295.05832 * 25 23 12 41 41 H 1.09002 * 109.47183 * 55.06216 * 25 23 12 42 42 H 1.09002 * 109.88367 * 61.60808 * 26 10 8 43 43 H 1.09000 * 109.88319 * 300.59426 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2931 1.4340 0.0000 4 8 1.7190 2.1701 -1.0715 5 8 3.6607 1.0491 -0.0258 6 6 1.8766 2.1973 1.5919 7 6 2.5892 3.5458 1.7130 8 6 2.2427 4.1803 3.0352 9 8 1.4985 3.6102 3.8048 10 7 2.7597 5.3811 3.3626 11 6 3.6763 6.1846 2.5277 12 6 3.4763 7.6431 3.0097 13 1 2.5890 8.0859 2.5573 14 7 4.6643 8.4548 2.7340 15 6 4.7499 9.1696 1.5691 16 1 3.9414 9.1354 0.8538 17 6 5.8753 9.9391 1.3080 18 7 6.8604 9.9813 2.1798 19 14 5.9923 10.9137 -0.2813 20 1 4.8703 11.8840 -0.3507 21 1 7.2837 11.6459 -0.3191 22 1 5.9161 9.9854 -1.4379 23 6 3.2816 7.4429 4.5359 24 1 4.2445 7.3588 5.0398 25 6 2.4574 8.5845 5.1347 26 6 2.5061 6.1110 4.6134 27 1 -0.3633 0.5140 0.8900 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 1.9500 -0.8401 0.0004 31 1 2.1959 1.5431 2.4031 32 1 0.7988 2.3498 1.6508 33 1 2.2695 4.1999 0.9017 34 1 3.6669 3.3938 1.6538 35 1 3.4077 6.0926 1.4753 36 1 4.7087 5.8717 2.6836 37 1 5.3903 8.4859 3.3764 38 1 7.6470 10.5187 1.9973 39 1 2.2603 8.3774 6.1865 40 1 3.0123 9.5185 5.0461 41 1 1.5126 8.6708 4.5980 42 1 2.8591 5.5255 5.4624 43 1 1.4392 6.3086 4.7176 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755109098.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:23 Heat of formation + Delta-G solvation = -124.426364 kcal Electronic energy + Delta-G solvation = -25137.797618 eV Core-core repulsion = 21344.241401 eV Total energy + Delta-G solvation = -3793.556217 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.20772 -39.06273 -38.24104 -37.09888 -35.88141 -35.85546 -34.46934 -33.70248 -32.46718 -29.16963 -28.09254 -26.80002 -25.95856 -25.35468 -22.98489 -21.34786 -20.53245 -20.20368 -19.13284 -18.93533 -18.30234 -17.63565 -17.37097 -17.08056 -16.61661 -16.48285 -15.88294 -15.67348 -15.33147 -14.89566 -14.62962 -14.56070 -14.43956 -14.25256 -13.84305 -13.76227 -13.62252 -13.27548 -13.22835 -13.15664 -13.04380 -12.87956 -12.79800 -12.60905 -12.47742 -12.24545 -12.14705 -11.99926 -11.97392 -11.70359 -11.41593 -11.08917 -10.89614 -10.45896 -9.73037 -9.03428 -7.93480 -5.23003 -0.81548 1.48383 1.52023 1.53171 1.58806 1.71512 1.94006 2.57858 2.73370 3.19597 3.26247 3.37579 3.40843 3.74774 3.80246 3.83067 3.94381 4.18216 4.21587 4.27554 4.36568 4.43146 4.47031 4.59026 4.64940 4.69126 4.77351 4.87558 4.90152 4.92941 5.02766 5.09132 5.12452 5.19341 5.34519 5.46039 5.56555 6.11019 6.27315 6.43690 7.00617 7.35607 8.06757 8.30662 9.28990 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.013469 B = 0.003220 C = 0.002725 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2078.358683 B = 8694.287568 C =10272.716792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.115 6.115 3 S 2.636 3.364 4 O -0.987 6.987 5 O -0.990 6.990 6 C -0.600 4.600 7 C -0.142 4.142 8 C 0.534 3.466 9 O -0.573 6.573 10 N -0.613 5.613 11 C 0.075 3.925 12 C 0.170 3.830 13 H 0.068 0.932 14 N -0.719 5.719 15 C -0.243 4.243 16 H 0.080 0.920 17 C -0.067 4.067 18 N -0.966 5.966 19 Si 0.967 3.033 20 H -0.279 1.279 21 H -0.300 1.300 22 H -0.278 1.278 23 C -0.106 4.106 24 H 0.078 0.922 25 C -0.128 4.128 26 C 0.118 3.882 27 H 0.075 0.925 28 H 0.061 0.939 29 H 0.107 0.893 30 H 0.427 0.573 31 H 0.152 0.848 32 H 0.153 0.847 33 H 0.122 0.878 34 H 0.119 0.881 35 H 0.081 0.919 36 H 0.066 0.934 37 H 0.377 0.623 38 H 0.251 0.749 39 H 0.073 0.927 40 H 0.047 0.953 41 H 0.059 0.941 42 H 0.069 0.931 43 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.217 -18.866 0.999 23.644 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.877 5.877 3 S 2.728 3.272 4 O -0.977 6.977 5 O -0.980 6.980 6 C -0.730 4.730 7 C -0.183 4.183 8 C 0.323 3.677 9 O -0.454 6.454 10 N -0.346 5.346 11 C -0.050 4.050 12 C 0.059 3.941 13 H 0.086 0.914 14 N -0.358 5.358 15 C -0.375 4.375 16 H 0.097 0.903 17 C -0.260 4.260 18 N -0.616 5.616 19 Si 0.796 3.204 20 H -0.205 1.205 21 H -0.226 1.226 22 H -0.204 1.204 23 C -0.125 4.125 24 H 0.097 0.903 25 C -0.186 4.186 26 C -0.004 4.004 27 H 0.094 0.906 28 H 0.080 0.920 29 H 0.125 0.875 30 H 0.262 0.738 31 H 0.170 0.830 32 H 0.171 0.829 33 H 0.140 0.860 34 H 0.137 0.863 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.210 0.790 38 H 0.060 0.940 39 H 0.092 0.908 40 H 0.066 0.934 41 H 0.078 0.922 42 H 0.087 0.913 43 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.251 -18.673 0.496 23.495 hybrid contribution 0.714 0.399 0.061 0.820 sum -13.537 -18.274 0.557 22.749 Atomic orbital electron populations 1.21805 0.77367 1.06131 1.02515 1.55090 1.16822 1.23847 1.91969 1.04096 0.72741 0.73967 0.76411 1.93573 1.79191 1.73471 1.51467 1.93573 1.34934 1.81823 1.87711 1.30314 1.12483 1.06590 1.23607 1.21479 1.03887 0.95737 0.97221 1.20231 0.79450 0.79506 0.88535 1.90653 1.38340 1.62926 1.53468 1.48610 1.47063 1.18613 1.20322 1.23390 0.92995 0.93200 0.95446 1.21524 0.90297 0.88717 0.93525 0.91424 1.42381 1.18549 1.53374 1.21482 1.19579 1.01506 1.19714 0.96663 0.90252 1.25470 0.96887 1.02342 1.01317 1.69785 1.08649 1.45669 1.37449 0.85320 0.76356 0.78657 0.80057 1.20469 1.22607 1.20442 1.22437 0.99486 0.94146 0.96473 0.90345 1.21607 0.99168 0.96797 1.01008 1.22002 1.00405 0.91733 0.86295 0.90608 0.92031 0.87483 0.73751 0.82985 0.82910 0.86004 0.86267 0.90060 0.91572 0.79046 0.94028 0.90816 0.93407 0.92153 0.91251 0.90693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.51 11.03 127.77 1.41 1.92 16 2 N -1.12 -12.52 6.08 -206.53 -1.25 -13.77 16 3 S 2.64 47.51 5.46 -56.49 -0.31 47.20 16 4 O -0.99 -24.83 17.73 -127.65 -2.26 -27.09 16 5 O -0.99 -24.82 18.08 -127.65 -2.31 -27.12 16 6 C -0.60 -9.66 5.31 71.98 0.38 -9.28 16 7 C -0.14 -3.02 4.73 29.85 0.14 -2.88 16 8 C 0.53 14.71 7.85 87.66 0.69 15.40 16 9 O -0.57 -18.24 16.31 -3.06 -0.05 -18.29 16 10 N -0.61 -17.39 3.34 -810.98 -2.71 -20.10 16 11 C 0.08 2.34 6.41 86.79 0.56 2.90 16 12 C 0.17 5.95 3.17 46.38 0.15 6.09 16 13 H 0.07 2.41 8.00 -2.39 -0.02 2.39 16 14 N -0.72 -32.72 5.24 -316.38 -1.66 -34.38 16 15 C -0.24 -12.44 9.96 84.03 0.84 -11.60 16 16 H 0.08 3.88 7.83 -2.91 -0.02 3.85 16 17 C -0.07 -3.65 5.50 84.86 0.47 -3.19 16 18 N -0.97 -56.32 13.06 21.65 0.28 -56.03 16 19 Si 0.97 44.24 29.55 68.60 2.03 46.26 16 20 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 21 H -0.30 -14.03 7.11 99.48 0.71 -13.32 16 22 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 23 C -0.11 -3.05 3.19 -9.60 -0.03 -3.08 16 24 H 0.08 2.39 8.00 -2.39 -0.02 2.37 16 25 C -0.13 -3.33 9.14 71.98 0.66 -2.67 16 26 C 0.12 3.16 6.45 86.73 0.56 3.72 16 27 H 0.08 0.36 7.73 -2.39 -0.02 0.34 16 28 H 0.06 0.58 8.04 -2.38 -0.02 0.56 16 29 H 0.11 0.29 8.14 -2.39 -0.02 0.27 16 30 H 0.43 3.41 8.92 -96.75 -0.86 2.54 16 31 H 0.15 2.13 8.10 -2.39 -0.02 2.11 16 32 H 0.15 2.03 7.73 -2.39 -0.02 2.02 16 33 H 0.12 2.30 7.86 -2.38 -0.02 2.28 16 34 H 0.12 2.31 8.14 -2.39 -0.02 2.29 16 35 H 0.08 2.37 7.50 -2.39 -0.02 2.35 16 36 H 0.07 2.19 8.14 -2.39 -0.02 2.17 16 37 H 0.38 18.64 7.76 -92.71 -0.72 17.92 16 38 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 39 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 40 H 0.05 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.07 1.78 8.14 -2.39 -0.02 1.77 16 43 H 0.07 1.90 7.82 -2.39 -0.02 1.88 16 Total: -1.00 -74.43 369.49 -2.98 -77.41 By element: Atomic # 1 Polarization: 29.15 SS G_CDS: -0.56 Total: 28.59 kcal Atomic # 6 Polarization: -8.49 SS G_CDS: 5.82 Total: -2.68 kcal Atomic # 7 Polarization: -118.95 SS G_CDS: -5.34 Total: -124.29 kcal Atomic # 8 Polarization: -67.88 SS G_CDS: -4.62 Total: -72.50 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 2.03 Total: 46.26 kcal Atomic # 16 Polarization: 47.51 SS G_CDS: -0.31 Total: 47.20 kcal Total: -74.43 -2.98 -77.41 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755109098.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.013 kcal (2) G-P(sol) polarization free energy of solvation -74.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.414 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.426 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds