Wall clock time and date at job start Fri Apr 10 2020 18:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46505 * 1 3 3 S 1.65603 * 119.99591 * 2 1 4 4 O 1.42095 * 104.27878 * 308.92612 * 3 2 1 5 5 O 1.42107 * 104.27428 * 181.07401 * 3 2 1 6 6 C 1.81394 * 104.45220 * 65.00128 * 3 2 1 7 7 C 1.53001 * 109.47314 * 179.97438 * 6 3 2 8 8 C 1.50693 * 109.47176 * 179.97438 * 7 6 3 9 9 O 1.21283 * 120.00346 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99987 * 180.02562 * 8 7 6 11 11 C 1.47421 * 125.64843 * 179.72186 * 10 8 7 12 12 C 1.55129 * 104.72458 * 155.81647 * 11 10 8 13 13 H 1.09000 * 111.22138 * 279.17798 * 12 11 10 14 14 C 1.53002 * 110.90796 * 155.27192 * 12 11 10 15 15 C 1.55159 * 101.48377 * 37.29063 * 12 11 10 16 16 H 1.08996 * 110.71852 * 205.97166 * 15 12 11 17 17 N 1.46499 * 110.86978 * 82.76979 * 15 12 11 18 18 C 1.36941 * 119.99860 * 159.93369 * 17 15 12 19 19 H 1.08000 * 120.00140 * 0.02562 * 18 17 15 20 20 C 1.38816 * 120.00053 * 179.97438 * 18 17 15 21 21 N 1.31617 * 119.99678 * 0.02562 * 20 18 17 22 22 Si 1.86789 * 120.00040 * 180.02562 * 20 18 17 23 23 H 1.48501 * 109.47392 * 60.00014 * 22 20 18 24 24 H 1.48503 * 109.47359 * 179.97438 * 22 20 18 25 25 H 1.48504 * 109.47234 * 299.99857 * 22 20 18 26 26 C 1.47018 * 125.64722 * 0.02568 * 10 8 7 27 27 H 1.08995 * 109.46775 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46859 * 299.99847 * 1 2 3 29 29 H 1.08999 * 109.47351 * 59.99871 * 1 2 3 30 30 H 0.97002 * 119.99918 * 179.97438 * 2 1 3 31 31 H 1.09004 * 109.46883 * 59.99756 * 6 3 2 32 32 H 1.09003 * 109.47315 * 300.00003 * 6 3 2 33 33 H 1.09002 * 109.46490 * 60.00171 * 7 6 3 34 34 H 1.09003 * 109.47284 * 300.00454 * 7 6 3 35 35 H 1.09005 * 110.36058 * 274.74476 * 11 10 8 36 36 H 1.08997 * 110.36930 * 37.06604 * 11 10 8 37 37 H 1.08998 * 109.46704 * 307.97730 * 14 12 11 38 38 H 1.08991 * 109.46921 * 67.97408 * 14 12 11 39 39 H 1.08994 * 109.46913 * 187.97556 * 14 12 11 40 40 H 0.97004 * 120.00265 * 339.93304 * 17 15 12 41 41 H 0.97006 * 120.00210 * 180.02562 * 21 20 18 42 42 H 1.09010 * 109.88204 * 300.44210 * 26 10 8 43 43 H 1.09004 * 109.88434 * 61.44920 * 26 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 16 2.2930 1.4342 0.0000 4 8 1.7188 2.1703 -1.0713 5 8 3.6607 1.0493 -0.0258 6 6 1.8764 2.1974 1.5920 7 6 2.5899 3.5454 1.7136 8 6 2.2433 4.1797 3.0359 9 8 1.4993 3.6095 3.8055 10 7 2.7602 5.3807 3.3633 11 6 2.5017 6.1148 4.6153 12 6 3.7314 7.0445 4.7882 13 1 4.5776 6.5046 5.2131 14 6 3.3781 8.2640 5.6421 15 6 4.0156 7.4572 3.3198 16 1 5.0654 7.7197 3.1893 17 7 3.1512 8.5679 2.9131 18 6 3.4965 9.3474 1.8415 19 1 4.4058 9.1431 1.2958 20 6 2.6771 10.3994 1.4558 21 7 1.5686 10.6480 2.1205 22 14 3.1477 11.4622 -0.0064 23 1 3.2421 10.6163 -1.2233 24 1 2.1142 12.5089 -0.2107 25 1 4.4607 12.1062 0.2519 26 6 3.6701 6.1783 2.5283 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.9500 -0.8401 0.0004 31 1 2.1958 1.5431 2.4032 32 1 0.7987 2.3497 1.6510 33 1 2.2707 4.1998 0.9024 34 1 3.6676 3.3928 1.6547 35 1 1.5879 6.7027 4.5285 36 1 2.4298 5.4218 5.4535 37 1 2.4889 8.7463 5.2362 38 1 3.1837 7.9463 6.6664 39 1 4.2101 8.9681 5.6317 40 1 2.3342 8.7511 3.4030 41 1 0.9958 11.3830 1.8508 42 1 4.5787 5.6116 2.3244 43 1 3.1790 6.4408 1.5912 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755109099.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:26 Heat of formation + Delta-G solvation = -121.048718 kcal Electronic energy + Delta-G solvation = -25387.852107 eV Core-core repulsion = 21594.442355 eV Total energy + Delta-G solvation = -3793.409752 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 319.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.21789 -39.13501 -38.24337 -37.10627 -35.88126 -35.70067 -34.44792 -33.69028 -32.20376 -29.33090 -28.08508 -26.81842 -25.85639 -25.42046 -23.38535 -20.72679 -20.51297 -20.15292 -19.44342 -18.85336 -18.26888 -17.57777 -17.33145 -16.99604 -16.74341 -16.28771 -15.92387 -15.80129 -15.50054 -14.98645 -14.63589 -14.59019 -14.47267 -13.96086 -13.77955 -13.67308 -13.42288 -13.34853 -13.26704 -13.16312 -13.05528 -12.86439 -12.74991 -12.60516 -12.48364 -12.31975 -12.17020 -11.98768 -11.97368 -11.45562 -11.36658 -11.08992 -10.89402 -10.47170 -9.67152 -9.00208 -7.91439 -5.19485 -0.81886 1.50588 1.51377 1.52746 1.58196 1.72123 2.00773 2.58782 2.72526 3.19399 3.28197 3.40475 3.44500 3.75952 3.80978 3.89882 3.93990 4.09659 4.20911 4.27996 4.41420 4.43871 4.62258 4.63461 4.64902 4.72690 4.77224 4.88089 4.91120 4.98132 5.01145 5.01652 5.20397 5.25094 5.34054 5.54987 5.60532 6.11432 6.30212 6.50800 7.03471 7.38022 8.12615 8.34864 9.31588 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.013906 B = 0.003337 C = 0.002901 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2012.976988 B = 8389.221371 C = 9648.515304 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -1.114 6.114 3 S 2.639 3.361 4 O -0.990 6.990 5 O -0.985 6.985 6 C -0.602 4.602 7 C -0.138 4.138 8 C 0.530 3.470 9 O -0.579 6.579 10 N -0.609 5.609 11 C 0.114 3.886 12 C -0.099 4.099 13 H 0.112 0.888 14 C -0.126 4.126 15 C 0.161 3.839 16 H 0.083 0.917 17 N -0.724 5.724 18 C -0.237 4.237 19 H 0.083 0.917 20 C -0.072 4.072 21 N -0.969 5.969 22 Si 0.967 3.033 23 H -0.280 1.280 24 H -0.303 1.303 25 H -0.277 1.277 26 C 0.071 3.929 27 H 0.108 0.892 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.427 0.573 31 H 0.155 0.845 32 H 0.145 0.855 33 H 0.113 0.887 34 H 0.131 0.869 35 H 0.045 0.955 36 H 0.080 0.920 37 H 0.036 0.964 38 H 0.071 0.929 39 H 0.057 0.943 40 H 0.375 0.625 41 H 0.249 0.751 42 H 0.095 0.905 43 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.211 -21.457 1.507 21.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.876 5.876 3 S 2.731 3.269 4 O -0.980 6.980 5 O -0.975 6.975 6 C -0.732 4.732 7 C -0.179 4.179 8 C 0.318 3.682 9 O -0.461 6.461 10 N -0.341 5.341 11 C -0.009 4.009 12 C -0.118 4.118 13 H 0.130 0.870 14 C -0.184 4.184 15 C 0.050 3.950 16 H 0.101 0.899 17 N -0.364 5.364 18 C -0.369 4.369 19 H 0.101 0.899 20 C -0.265 4.265 21 N -0.619 5.619 22 Si 0.796 3.204 23 H -0.206 1.206 24 H -0.229 1.229 25 H -0.203 1.203 26 C -0.054 4.054 27 H 0.127 0.873 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.264 0.736 31 H 0.173 0.827 32 H 0.163 0.837 33 H 0.131 0.869 34 H 0.149 0.851 35 H 0.064 0.936 36 H 0.098 0.902 37 H 0.055 0.945 38 H 0.090 0.910 39 H 0.076 0.924 40 H 0.209 0.791 41 H 0.057 0.943 42 H 0.113 0.887 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.316 -21.270 1.018 21.420 hybrid contribution -0.734 0.753 -0.101 1.056 sum 1.582 -20.518 0.917 20.599 Atomic orbital electron populations 1.21790 0.77518 1.06141 1.02386 1.55076 1.16721 1.23903 1.91942 1.04017 0.72816 0.73861 0.76228 1.93577 1.79265 1.73529 1.51585 1.93567 1.34543 1.81759 1.87633 1.30338 1.12175 1.06767 1.23917 1.21451 1.04310 0.95443 0.96736 1.20320 0.79489 0.79785 0.88562 1.90641 1.38330 1.63540 1.53548 1.48546 1.47205 1.18128 1.20221 1.22300 0.98053 0.94049 0.86477 1.22629 0.97483 0.96180 0.95549 0.86981 1.21473 1.01447 0.96517 0.98920 1.21484 0.95314 0.86006 0.92150 0.89943 1.42615 1.25879 1.32889 1.35025 1.19614 1.04794 1.07002 1.05446 0.89909 1.25467 0.97535 1.01193 1.02260 1.69803 1.15209 1.33108 1.43811 0.85315 0.76805 0.78343 0.79891 1.20640 1.22942 1.20303 1.23223 0.93316 0.93828 0.95042 0.87326 0.90867 0.92161 0.73648 0.82696 0.83693 0.86898 0.85143 0.93639 0.90185 0.94451 0.91012 0.92411 0.79110 0.94272 0.88698 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.62 11.03 127.77 1.41 2.03 16 2 N -1.11 -13.32 6.08 -206.53 -1.25 -14.58 16 3 S 2.64 49.02 5.46 -56.49 -0.31 48.72 16 4 O -0.99 -26.36 17.73 -127.65 -2.26 -28.63 16 5 O -0.98 -23.65 18.08 -127.65 -2.31 -25.95 16 6 C -0.60 -10.64 5.31 71.98 0.38 -10.25 16 7 C -0.14 -3.12 4.90 29.85 0.15 -2.97 16 8 C 0.53 15.98 7.85 87.65 0.69 16.67 16 9 O -0.58 -20.35 16.24 -3.04 -0.05 -20.40 16 10 N -0.61 -18.79 3.32 -811.35 -2.70 -21.49 16 11 C 0.11 3.52 6.36 86.93 0.55 4.07 16 12 C -0.10 -2.77 3.53 -9.32 -0.03 -2.80 16 13 H 0.11 2.50 8.14 -2.39 -0.02 2.48 16 14 C -0.13 -3.69 8.85 71.98 0.64 -3.06 16 15 C 0.16 5.41 3.36 46.18 0.16 5.57 16 16 H 0.08 2.63 8.12 -2.39 -0.02 2.61 16 17 N -0.72 -32.86 4.62 -317.33 -1.47 -34.33 16 18 C -0.24 -12.09 9.98 84.03 0.84 -11.25 16 19 H 0.08 3.97 7.83 -2.91 -0.02 3.95 16 20 C -0.07 -3.95 5.50 84.86 0.47 -3.48 16 21 N -0.97 -57.44 13.06 21.65 0.28 -57.15 16 22 Si 0.97 44.66 29.55 68.60 2.03 46.68 16 23 H -0.28 -12.56 7.11 99.48 0.71 -11.85 16 24 H -0.30 -14.43 7.11 99.48 0.71 -13.72 16 25 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 26 C 0.07 2.16 6.22 86.73 0.54 2.70 16 27 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 28 H 0.07 0.51 7.73 -2.39 -0.02 0.49 16 29 H 0.06 0.69 8.04 -2.39 -0.02 0.67 16 30 H 0.43 3.48 8.92 -96.74 -0.86 2.62 16 31 H 0.15 2.29 8.10 -2.39 -0.02 2.27 16 32 H 0.14 2.41 7.73 -2.39 -0.02 2.39 16 33 H 0.11 2.51 8.14 -2.39 -0.02 2.49 16 34 H 0.13 2.30 8.14 -2.39 -0.02 2.29 16 35 H 0.05 1.63 7.99 -2.38 -0.02 1.61 16 36 H 0.08 2.31 8.03 -2.39 -0.02 2.29 16 37 H 0.04 1.34 6.39 -2.39 -0.02 1.33 16 38 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 39 H 0.06 1.73 8.14 -2.39 -0.02 1.71 16 40 H 0.38 18.81 6.11 -92.71 -0.57 18.24 16 41 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 42 H 0.09 2.21 8.14 -2.38 -0.02 2.19 16 43 H 0.06 2.06 8.05 -2.38 -0.02 2.04 16 Total: -1.00 -76.87 366.70 -2.66 -79.53 By element: Atomic # 1 Polarization: 30.80 SS G_CDS: -0.41 Total: 30.39 kcal Atomic # 6 Polarization: -8.57 SS G_CDS: 5.78 Total: -2.79 kcal Atomic # 7 Polarization: -122.42 SS G_CDS: -5.14 Total: -127.55 kcal Atomic # 8 Polarization: -70.36 SS G_CDS: -4.62 Total: -74.98 kcal Atomic # 14 Polarization: 44.66 SS G_CDS: 2.03 Total: 46.68 kcal Atomic # 16 Polarization: 49.02 SS G_CDS: -0.31 Total: 48.72 kcal Total: -76.87 -2.66 -79.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755109099.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.517 kcal (2) G-P(sol) polarization free energy of solvation -76.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -118.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.531 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds