Wall clock time and date at job start Fri Apr 10 2020 18:18:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.46507 * 120.00096 * 2 1 4 4 C 1.52995 * 109.46789 * 270.00019 * 3 2 1 5 5 H 1.09001 * 109.46917 * 304.99571 * 4 3 2 6 6 O 1.42895 * 109.47858 * 64.99691 * 4 3 2 7 7 C 1.53005 * 109.47051 * 185.00193 * 4 3 2 8 8 N 1.46501 * 109.47088 * 180.02562 * 7 4 3 9 9 C 1.36937 * 120.00044 * 180.02562 * 8 7 4 10 10 H 1.08008 * 119.99937 * 359.97438 * 9 8 7 11 11 C 1.38811 * 120.00368 * 179.97438 * 9 8 7 12 12 N 1.31621 * 119.99453 * 359.97438 * 11 9 8 13 13 Si 1.86796 * 120.00176 * 179.97438 * 11 9 8 14 14 H 1.48500 * 109.47189 * 0.02562 * 13 11 9 15 15 H 1.48510 * 109.46995 * 119.99705 * 13 11 9 16 16 H 1.48493 * 109.47409 * 239.99612 * 13 11 9 17 17 C 1.34776 * 120.00162 * 179.97438 * 2 1 3 18 18 O 1.21752 * 119.99966 * 180.31083 * 17 2 1 19 19 C 1.46189 * 119.99899 * 0.32150 * 17 2 1 20 20 C 1.38728 * 126.76310 * 348.05997 * 19 17 2 21 21 N 1.32281 * 108.17504 * 179.97438 * 20 19 17 22 22 C 1.33132 * 109.71883 * 359.97438 * 21 20 19 23 23 C 1.40622 * 132.28752 * 179.97438 * 22 21 20 24 24 C 1.36312 * 119.21991 * 180.02562 * 23 22 21 25 25 C 1.39875 * 120.12366 * 0.27557 * 24 23 22 26 26 N 1.30804 * 120.77498 * 359.42157 * 25 24 23 27 27 N 1.36653 * 108.62708 * 0.02562 * 22 21 20 28 28 H 1.09003 * 109.46974 * 263.38872 * 1 2 3 29 29 H 1.09003 * 109.47118 * 23.38651 * 1 2 3 30 30 H 1.08996 * 109.47151 * 143.38847 * 1 2 3 31 31 H 1.09007 * 109.46772 * 29.99454 * 3 2 1 32 32 H 1.08994 * 109.47015 * 149.99486 * 3 2 1 33 33 H 0.96710 * 113.99757 * 59.99469 * 6 4 3 34 34 H 1.09001 * 109.46752 * 299.99479 * 7 4 3 35 35 H 1.08994 * 109.47563 * 59.99508 * 7 4 3 36 36 H 0.96996 * 120.00106 * 359.97438 * 8 7 4 37 37 H 0.97006 * 119.99424 * 180.02562 * 12 11 9 38 38 H 1.07994 * 125.91033 * 359.97438 * 20 19 17 39 39 H 1.07998 * 120.39010 * 0.02562 * 23 22 21 40 40 H 1.08001 * 119.93958 * 180.02562 * 24 23 22 41 41 H 1.07997 * 119.60946 * 179.70281 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4525 1.7104 -1.4425 5 1 2.9643 0.9130 -1.9814 6 8 1.2061 1.9934 -2.0815 7 6 3.3239 2.9680 -1.4444 8 7 3.5675 3.3912 -2.8256 9 6 4.3284 4.5015 -3.0774 10 1 4.7486 5.0655 -2.2577 11 6 4.5598 4.9023 -4.3862 12 7 4.0481 4.2147 -5.3851 13 14 5.5971 6.4172 -4.7296 14 1 6.0521 7.0072 -3.4450 15 1 6.7787 6.0340 -5.5436 16 1 4.7861 7.4144 -5.4732 17 6 2.1389 -1.1672 0.0005 18 8 3.3564 -1.1671 0.0062 19 6 1.4080 -2.4332 -0.0060 20 6 0.0501 -2.6091 0.2169 21 7 -0.2192 -3.9010 0.1248 22 6 0.8966 -4.5741 -0.1477 23 6 1.1523 -5.9432 -0.3415 24 6 2.4245 -6.3508 -0.6127 25 6 3.4602 -5.4139 -0.6902 26 7 3.2241 -4.1392 -0.5160 27 7 1.9316 -3.6861 -0.2356 28 1 -0.3633 -0.1183 1.0209 29 1 -0.3633 0.9433 -0.4079 30 1 -0.3633 -0.8249 -0.6129 31 1 1.6083 2.0285 0.5138 32 1 3.1499 1.1384 0.5139 33 1 0.6955 2.6949 -1.6543 34 1 2.8121 3.7654 -0.9054 35 1 4.2746 2.7522 -0.9571 36 1 3.1904 2.8846 -3.5618 37 1 4.2100 4.4945 -6.2996 38 1 -0.6636 -1.8268 0.4290 39 1 0.3501 -6.6634 -0.2764 40 1 2.6338 -7.3994 -0.7640 41 1 4.4659 -5.7465 -0.9007 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755792239.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:44 Heat of formation + Delta-G solvation = 80.412676 kcal Electronic energy + Delta-G solvation = -26231.697617 eV Core-core repulsion = 22343.872687 eV Total energy + Delta-G solvation = -3887.824930 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.143 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.93113 -39.89265 -38.33983 -37.39448 -35.36166 -33.98809 -33.97455 -31.74600 -31.38385 -30.53472 -28.97381 -27.18910 -25.97669 -24.86465 -23.78603 -22.69646 -22.26736 -21.19684 -20.25998 -18.10128 -17.88876 -17.38763 -17.13037 -16.67557 -16.37183 -16.07691 -15.74538 -15.11671 -14.95448 -14.69325 -14.41219 -14.06681 -13.77946 -13.64252 -13.35763 -13.12888 -12.99387 -12.92070 -12.45156 -12.23133 -11.89395 -11.58671 -11.53084 -11.42683 -10.90744 -10.80960 -10.67038 -10.43550 -10.13100 -10.01646 -9.86536 -9.76018 -9.63638 -8.86406 -8.68342 -8.47943 -6.87819 -5.71034 -3.00385 -0.01871 0.49962 1.36410 1.96309 2.77143 2.87736 3.14585 3.46154 3.51102 3.53882 3.59228 3.72650 4.07658 4.37512 4.38947 4.58802 4.68449 4.76353 4.79151 4.92918 5.01516 5.10003 5.22901 5.26549 5.27837 5.34242 5.55944 5.59740 5.69528 5.78894 5.79782 5.96352 6.03054 6.25888 6.42622 6.58013 6.78055 7.09447 7.18583 7.22173 7.72792 8.04264 8.07610 8.47132 9.58505 10.16862 10.52679 11.51462 Molecular weight = 319.14amu Principal moments of inertia in cm(-1) A = 0.020945 B = 0.002627 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1336.501053 B =10655.861266 C =11356.208530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.058 3.942 2 N -0.594 5.594 3 C 0.091 3.909 4 C 0.086 3.914 5 H 0.100 0.900 6 O -0.550 6.550 7 C 0.127 3.873 8 N -0.726 5.726 9 C -0.241 4.241 10 H 0.070 0.930 11 C -0.014 4.014 12 N -0.930 5.930 13 Si 0.907 3.093 14 H -0.280 1.280 15 H -0.292 1.292 16 H -0.291 1.291 17 C 0.586 3.414 18 O -0.519 6.519 19 C -0.051 4.051 20 C 0.058 3.942 21 N -0.465 5.465 22 C 0.177 3.823 23 C -0.011 4.011 24 C -0.169 4.169 25 C 0.124 3.876 26 N -0.232 5.232 27 N -0.237 5.237 28 H 0.062 0.938 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.367 0.633 34 H 0.020 0.980 35 H 0.028 0.972 36 H 0.389 0.611 37 H 0.254 0.746 38 H 0.216 0.784 39 H 0.165 0.835 40 H 0.160 0.840 41 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.129 -21.906 14.723 28.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 N -0.326 5.326 3 C -0.032 4.032 4 C 0.025 3.975 5 H 0.118 0.882 6 O -0.354 6.354 7 C -0.002 4.002 8 N -0.370 5.370 9 C -0.372 4.372 10 H 0.088 0.912 11 C -0.210 4.210 12 N -0.578 5.578 13 Si 0.739 3.261 14 H -0.206 1.206 15 H -0.219 1.219 16 H -0.219 1.219 17 C 0.373 3.627 18 O -0.395 6.395 19 C -0.172 4.172 20 C -0.103 4.103 21 N -0.185 5.185 22 C -0.067 4.067 23 C -0.039 4.039 24 C -0.195 4.195 25 C -0.068 4.068 26 N -0.042 5.042 27 N -0.006 5.006 28 H 0.080 0.920 29 H 0.105 0.895 30 H 0.102 0.898 31 H 0.104 0.896 32 H 0.114 0.886 33 H 0.213 0.787 34 H 0.038 0.962 35 H 0.045 0.955 36 H 0.223 0.777 37 H 0.064 0.936 38 H 0.232 0.768 39 H 0.183 0.817 40 H 0.178 0.822 41 H 0.220 0.780 Dipole moment (debyes) X Y Z Total from point charges -9.317 -21.683 14.437 27.666 hybrid contribution 0.612 0.691 -0.270 0.962 sum -8.706 -20.991 14.167 26.779 Atomic orbital electron populations 1.22502 0.79519 1.05069 1.01332 1.47297 1.07069 1.05078 1.73194 1.22293 0.98493 0.83670 0.98727 1.22556 0.85233 0.98214 0.91485 0.88227 1.86636 1.32289 1.58968 1.57481 1.21214 0.96390 0.92849 0.89749 1.42253 1.61752 1.32227 1.00814 1.19270 1.23526 1.02561 0.91834 0.91203 1.24769 1.01243 0.99438 0.95598 1.69704 1.49149 1.40773 0.98187 0.86109 0.79707 0.82575 0.77744 1.20574 1.21871 1.21863 1.16516 0.86525 0.81909 0.77701 1.90916 1.12574 1.86817 1.49168 1.20870 0.93874 0.84542 1.17872 1.24261 0.92082 0.94108 0.99848 1.70465 1.23728 1.04870 1.19407 1.21323 0.84644 0.93090 1.07661 1.20633 0.98450 0.90910 0.93938 1.21616 0.92219 1.02357 1.03289 1.24362 1.01959 0.88182 0.92347 1.76229 0.95744 1.16914 1.15293 1.46599 1.05372 1.07131 1.41531 0.92012 0.89508 0.89831 0.89588 0.88571 0.78716 0.96188 0.95473 0.77668 0.93587 0.76805 0.81716 0.82214 0.78001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.49 8.48 59.85 0.51 1.00 16 2 N -0.59 -7.55 2.84 -183.30 -0.52 -8.07 16 3 C 0.09 1.21 5.04 -4.04 -0.02 1.19 16 4 C 0.09 1.47 3.30 -26.73 -0.09 1.38 16 5 H 0.10 2.05 8.14 -51.93 -0.42 1.63 16 6 O -0.55 -9.18 12.04 -35.23 -0.42 -9.60 16 7 C 0.13 2.60 5.92 -4.04 -0.02 2.58 16 8 N -0.73 -19.33 5.49 -59.91 -0.33 -19.66 16 9 C -0.24 -6.99 9.99 -15.06 -0.15 -7.14 16 10 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 11 C -0.01 -0.43 5.50 -17.43 -0.10 -0.52 16 12 N -0.93 -29.29 13.06 55.49 0.72 -28.56 16 13 Si 0.91 23.01 29.55 -169.99 -5.02 17.99 16 14 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 15 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 16 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 17 C 0.59 9.24 7.63 -13.07 -0.10 9.14 16 18 O -0.52 -10.17 16.46 5.14 0.08 -10.08 16 19 C -0.05 -0.71 6.93 -81.85 -0.57 -1.28 16 20 C 0.06 0.64 9.75 -17.18 -0.17 0.48 16 21 N -0.46 -5.64 11.25 -12.24 -0.14 -5.77 16 22 C 0.18 2.09 7.85 -156.07 -1.23 0.86 16 23 C -0.01 -0.08 10.11 -39.38 -0.40 -0.48 16 24 C -0.17 -0.88 10.03 -39.66 -0.40 -1.28 16 25 C 0.12 0.93 11.30 -17.38 -0.20 0.74 16 26 N -0.23 -3.07 11.71 30.62 0.36 -2.71 16 27 N -0.24 -3.33 4.05 -8.68 -0.04 -3.37 16 28 H 0.06 0.35 7.54 -51.93 -0.39 -0.04 16 29 H 0.09 0.65 7.26 -51.93 -0.38 0.28 16 30 H 0.08 0.69 5.01 -51.93 -0.26 0.43 16 31 H 0.09 0.87 8.07 -51.93 -0.42 0.45 16 32 H 0.10 1.39 7.41 -51.93 -0.39 1.01 16 33 H 0.37 4.72 9.04 45.56 0.41 5.13 16 34 H 0.02 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 36 H 0.39 11.20 7.54 -40.82 -0.31 10.89 16 37 H 0.25 7.69 8.31 -40.82 -0.34 7.35 16 38 H 0.22 1.58 4.53 -52.49 -0.24 1.34 16 39 H 0.17 0.68 8.06 -52.49 -0.42 0.25 16 40 H 0.16 0.16 8.06 -52.49 -0.42 -0.26 16 41 H 0.20 0.67 8.06 -52.49 -0.42 0.24 16 LS Contribution 350.75 15.07 5.29 5.29 Total: -1.00 -41.00 350.75 -6.99 -47.99 By element: Atomic # 1 Polarization: 13.96 SS G_CDS: -4.05 Total: 9.91 kcal Atomic # 6 Polarization: 9.58 SS G_CDS: -2.92 Total: 6.66 kcal Atomic # 7 Polarization: -68.21 SS G_CDS: 0.06 Total: -68.15 kcal Atomic # 8 Polarization: -19.35 SS G_CDS: -0.34 Total: -19.68 kcal Atomic # 14 Polarization: 23.01 SS G_CDS: -5.02 Total: 17.99 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -41.00 -6.99 -47.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755792239.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.405 kcal (2) G-P(sol) polarization free energy of solvation -41.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.993 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds