Wall clock time and date at job start Fri Apr 10 2020 18:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.53073 * 2 1 4 4 C 1.53046 * 109.55326 * 239.93405 * 2 1 3 5 5 N 1.46851 * 109.57099 * 180.94761 * 4 2 1 6 6 C 1.46899 * 110.99657 * 185.80957 * 5 4 2 7 7 C 1.46848 * 111.19911 * 61.70597 * 5 4 2 8 8 C 1.53035 * 109.52559 * 298.25787 * 7 5 4 9 9 C 1.53116 * 109.27841 * 59.17990 * 8 7 5 10 10 H 1.08999 * 109.52373 * 62.30864 * 9 8 7 11 11 N 1.46499 * 109.52286 * 182.43944 * 9 8 7 12 12 C 1.46496 * 120.00068 * 59.87732 * 11 9 8 13 13 S 1.65603 * 120.00163 * 239.87101 * 11 9 8 14 14 O 1.42101 * 106.39859 * 336.46510 * 13 11 9 15 15 O 1.42091 * 106.40103 * 203.54324 * 13 11 9 16 16 N 1.65596 * 107.21528 * 89.99962 * 13 11 9 17 17 C 1.46502 * 120.00234 * 270.00187 * 16 13 11 18 18 C 1.46506 * 119.99991 * 90.00048 * 16 13 11 19 19 C 1.50698 * 109.47006 * 94.99664 * 18 16 13 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 16 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 16 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 H 1.09000 * 109.47257 * 299.89752 * 1 2 3 28 28 H 1.09005 * 109.47206 * 59.89854 * 1 2 3 29 29 H 1.08996 * 109.47230 * 179.90064 * 1 2 3 30 30 H 1.08998 * 109.46304 * 60.90021 * 4 2 1 31 31 H 1.08998 * 109.40747 * 300.95677 * 4 2 1 32 32 H 1.09005 * 109.47043 * 299.73367 * 6 5 4 33 33 H 1.08997 * 109.47420 * 59.73867 * 6 5 4 34 34 H 1.08999 * 109.46862 * 179.74556 * 6 5 4 35 35 H 1.09004 * 109.45548 * 178.23836 * 7 5 4 36 36 H 1.09001 * 109.45808 * 58.27632 * 7 5 4 37 37 H 1.09003 * 109.50116 * 299.24315 * 8 7 5 38 38 H 1.08992 * 109.50206 * 179.12249 * 8 7 5 39 39 H 1.09003 * 109.47035 * 270.00188 * 12 11 9 40 40 H 1.09005 * 109.47027 * 29.99862 * 12 11 9 41 41 H 1.08995 * 109.47810 * 149.99621 * 12 11 9 42 42 H 1.08995 * 109.47273 * 269.99828 * 17 16 13 43 43 H 1.08996 * 109.47199 * 30.00135 * 17 16 13 44 44 H 1.09003 * 109.46681 * 149.99950 * 17 16 13 45 45 H 1.09001 * 109.47068 * 335.00329 * 18 16 13 46 46 H 1.08993 * 109.47068 * 214.99783 * 18 16 13 47 47 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0423 -0.7225 -1.2482 5 7 3.5106 -0.7426 -1.2371 6 6 4.0387 -1.3063 -2.4867 7 6 4.0230 -1.4744 -0.0716 8 6 3.5712 -0.7734 1.2115 9 6 2.0413 -0.7239 1.2487 10 1 1.6443 -1.7388 1.2694 11 7 1.6037 -0.0025 2.4464 12 6 2.0094 1.3901 2.6518 13 16 0.6504 -0.7612 3.5680 14 8 -0.0099 -1.8176 2.8845 15 8 -0.0413 0.2648 4.2665 16 7 1.6616 -1.4759 4.6676 17 6 2.1247 -2.8490 4.4524 18 6 2.0930 -0.7350 5.8556 19 6 1.1864 -1.0684 7.0122 20 1 0.3706 -1.7630 6.8761 21 6 1.3989 -0.4874 8.2444 22 7 2.3924 0.3580 8.4103 23 14 0.2754 -0.9013 9.6783 24 1 0.7126 -0.1502 10.8825 25 1 0.3402 -2.3592 9.9532 26 1 -1.1200 -0.5230 9.3392 27 1 -0.3634 0.5122 0.8909 28 1 -0.3634 0.5154 -0.8891 29 1 -0.3633 -1.0276 -0.0018 30 1 1.6929 -0.2007 -2.1390 31 1 1.6652 -1.7452 -1.2550 32 1 3.6799 -2.3289 -2.6042 33 1 3.7000 -0.7033 -3.3291 34 1 5.1282 -1.3052 -2.4538 35 1 5.1121 -1.4986 -0.1082 36 1 3.6365 -2.4935 -0.0841 37 1 3.9687 0.2414 1.2311 38 1 3.9385 -1.3255 2.0765 39 1 2.9503 1.4171 3.2014 40 1 2.1391 1.8771 1.6852 41 1 1.2407 1.9123 3.2214 42 1 1.4259 -3.5450 4.9163 43 1 2.1815 -3.0499 3.3827 44 1 3.1116 -2.9736 4.8984 45 1 2.0455 0.3351 5.6535 46 1 3.1171 -1.0126 6.1049 47 1 2.9760 0.5726 7.6658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408238666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:43 Heat of formation + Delta-G solvation = -72.320549 kcal Electronic energy + Delta-G solvation = -27461.284554 eV Core-core repulsion = 23805.820909 eV Total energy + Delta-G solvation = -3655.463645 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.73359 -36.73083 -36.23857 -35.66180 -35.21372 -33.01733 -32.61231 -31.60162 -27.53675 -27.18791 -26.94928 -25.32675 -24.80820 -22.79486 -22.40901 -21.75483 -19.65862 -18.61789 -17.65019 -16.86156 -16.63017 -16.32686 -15.55253 -15.39310 -14.77695 -14.68416 -14.55810 -14.02228 -13.70245 -13.55019 -13.33389 -13.27537 -12.70246 -12.66278 -12.61719 -12.48000 -12.36409 -12.21298 -12.05074 -11.79140 -11.66977 -11.53320 -11.40210 -11.26485 -11.13598 -11.10061 -10.85842 -10.77453 -10.62820 -10.53623 -10.37761 -10.06762 -9.33691 -8.83794 -8.59281 -8.38661 -7.94766 -6.39941 -4.11427 1.11099 3.38123 3.45161 3.49536 3.66378 3.66663 3.99726 4.49154 4.54421 4.62873 4.69450 4.83969 4.92148 5.09581 5.11816 5.20036 5.23266 5.28691 5.31549 5.39452 5.43910 5.46468 5.55561 5.58016 5.58401 5.67954 5.71394 5.79481 5.88521 5.93997 5.97440 6.04155 6.10167 6.16663 6.21706 6.37488 6.44901 6.70235 6.81595 6.82468 6.89688 7.16791 7.44666 8.00580 8.43544 8.79260 9.57326 10.98080 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.025455 B = 0.003855 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.713688 B = 7260.941837 C = 7536.504488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.094 4.094 3 H 0.085 0.915 4 C 0.062 3.938 5 N -0.545 5.545 6 C 0.026 3.974 7 C 0.057 3.943 8 C -0.127 4.127 9 C 0.154 3.846 10 H 0.093 0.907 11 N -1.008 6.008 12 C 0.087 3.913 13 S 2.779 3.221 14 O -0.993 6.993 15 O -0.962 6.962 16 N -0.994 5.994 17 C 0.110 3.890 18 C 0.249 3.751 19 C -0.608 4.608 20 H 0.053 0.947 21 C 0.021 3.979 22 N -0.909 5.909 23 Si 1.069 2.931 24 H -0.281 1.281 25 H -0.287 1.287 26 H -0.286 1.286 27 H 0.056 0.944 28 H 0.057 0.943 29 H 0.061 0.939 30 H 0.077 0.923 31 H 0.036 0.964 32 H 0.024 0.976 33 H 0.067 0.933 34 H 0.067 0.933 35 H 0.078 0.922 36 H 0.035 0.965 37 H 0.079 0.921 38 H 0.074 0.926 39 H 0.053 0.947 40 H 0.071 0.929 41 H 0.081 0.919 42 H 0.051 0.949 43 H 0.050 0.950 44 H 0.065 0.935 45 H 0.026 0.974 46 H 0.023 0.977 47 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.146 -2.333 -20.591 21.133 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.115 4.115 3 H 0.104 0.896 4 C -0.066 4.066 5 N -0.269 5.269 6 C -0.122 4.122 7 C -0.072 4.072 8 C -0.167 4.167 9 C 0.047 3.953 10 H 0.111 0.889 11 N -0.845 5.845 12 C -0.059 4.059 13 S 2.788 3.212 14 O -0.977 6.977 15 O -0.945 6.945 16 N -0.836 5.836 17 C -0.037 4.037 18 C 0.127 3.873 19 C -0.647 4.647 20 H 0.071 0.929 21 C -0.183 4.183 22 N -0.545 5.545 23 Si 0.896 3.104 24 H -0.206 1.206 25 H -0.214 1.214 26 H -0.212 1.212 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.080 0.920 30 H 0.096 0.904 31 H 0.055 0.945 32 H 0.043 0.957 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.096 0.904 36 H 0.053 0.947 37 H 0.097 0.903 38 H 0.093 0.907 39 H 0.071 0.929 40 H 0.090 0.910 41 H 0.100 0.900 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.084 0.916 45 H 0.044 0.956 46 H 0.041 0.959 47 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.087 -1.538 -18.906 19.218 hybrid contribution 0.510 -1.188 -1.676 2.117 sum 3.598 -2.726 -20.583 21.072 Atomic orbital electron populations 1.21800 0.94466 1.02586 1.01825 1.21458 0.95871 1.00866 0.93272 0.89643 1.22145 0.86870 0.99257 0.98349 1.61925 1.08308 1.54179 1.02518 1.22338 1.00517 0.97522 0.91871 1.22093 1.00056 0.95026 0.89975 1.21991 0.95379 1.02533 0.96777 1.20917 0.94226 0.95833 0.84327 0.88932 1.58162 1.70331 1.21664 1.34325 1.21487 1.00979 0.81236 1.02195 1.02085 0.73772 0.73149 0.72177 1.93522 1.72357 1.56751 1.75025 1.93611 1.70270 1.58307 1.72341 1.57575 1.68003 1.22026 1.36003 1.21188 1.00277 0.83019 0.99175 1.19103 0.95754 0.90522 0.81966 1.22300 1.16135 1.29995 0.96313 0.92851 1.25806 0.98505 0.93677 1.00311 1.70827 1.16262 1.32323 1.35109 0.83554 0.75388 0.75977 0.75456 1.20619 1.21374 1.21196 0.92488 0.92426 0.92027 0.90440 0.94538 0.95702 0.91398 0.91374 0.90398 0.94663 0.90262 0.90745 0.92878 0.91017 0.90046 0.93072 0.93123 0.91598 0.95593 0.95867 0.92357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.76 9.07 37.16 0.34 -1.42 16 2 C -0.09 -1.05 2.28 -90.53 -0.21 -1.26 16 3 H 0.09 0.94 6.57 -51.93 -0.34 0.60 16 4 C 0.06 0.60 4.75 -3.83 -0.02 0.58 16 5 N -0.54 -5.20 4.91 -242.95 -1.19 -6.39 16 6 C 0.03 0.19 9.59 60.06 0.58 0.77 16 7 C 0.06 0.55 5.46 -3.83 -0.02 0.52 16 8 C -0.13 -1.41 5.41 -26.65 -0.14 -1.55 16 9 C 0.15 1.98 1.99 -67.81 -0.14 1.84 16 10 H 0.09 1.29 6.92 -51.93 -0.36 0.93 16 11 N -1.01 -15.46 2.49 -114.48 -0.28 -15.75 16 12 C 0.09 1.19 9.67 59.84 0.58 1.77 16 13 S 2.78 56.46 6.01 -107.50 -0.65 55.81 16 14 O -0.99 -20.71 15.78 -57.17 -0.90 -21.61 16 15 O -0.96 -23.41 15.71 -57.17 -0.90 -24.30 16 16 N -0.99 -21.07 3.23 -123.05 -0.40 -21.47 16 17 C 0.11 1.94 10.33 59.85 0.62 2.56 16 18 C 0.25 6.25 4.43 -5.19 -0.02 6.23 16 19 C -0.61 -17.49 9.38 -34.44 -0.32 -17.81 16 20 H 0.05 1.56 7.81 -52.48 -0.41 1.15 16 21 C 0.02 0.62 5.46 -17.82 -0.10 0.52 16 22 N -0.91 -27.31 13.65 55.43 0.76 -26.56 16 23 Si 1.07 25.79 29.90 -169.99 -5.08 20.71 16 24 H -0.28 -6.69 7.11 56.52 0.40 -6.28 16 25 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 26 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 27 H 0.06 0.77 7.68 -51.93 -0.40 0.37 16 28 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 30 H 0.08 0.66 8.12 -51.93 -0.42 0.24 16 31 H 0.04 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.02 0.18 8.14 -51.93 -0.42 -0.24 16 33 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 34 H 0.07 0.46 8.10 -51.93 -0.42 0.03 16 35 H 0.08 0.66 8.09 -51.93 -0.42 0.24 16 36 H 0.04 0.34 8.14 -51.93 -0.42 -0.09 16 37 H 0.08 0.88 7.60 -51.93 -0.39 0.49 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 40 H 0.07 0.79 6.38 -51.93 -0.33 0.46 16 41 H 0.08 1.25 7.02 -51.93 -0.36 0.89 16 42 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 43 H 0.05 0.74 7.79 -51.93 -0.40 0.34 16 44 H 0.07 1.07 7.94 -51.93 -0.41 0.65 16 45 H 0.03 0.68 7.48 -51.93 -0.39 0.29 16 46 H 0.02 0.58 7.83 -51.93 -0.41 0.18 16 47 H 0.27 7.83 7.22 -40.82 -0.29 7.53 16 LS Contribution 376.66 15.07 5.68 5.68 Total: -1.00 -34.00 376.66 -10.20 -44.20 By element: Atomic # 1 Polarization: 5.30 SS G_CDS: -8.37 Total: -3.07 kcal Atomic # 6 Polarization: -8.39 SS G_CDS: 1.14 Total: -7.25 kcal Atomic # 7 Polarization: -69.04 SS G_CDS: -1.12 Total: -70.16 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -1.80 Total: -45.92 kcal Atomic # 14 Polarization: 25.79 SS G_CDS: -5.08 Total: 20.71 kcal Atomic # 16 Polarization: 56.46 SS G_CDS: -0.65 Total: 55.81 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.00 -10.20 -44.20 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.120 kcal (2) G-P(sol) polarization free energy of solvation -34.002 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.199 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds