Wall clock time and date at job start Fri Apr 10 2020 18:18:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08998 * 109.53073 * 2 1 4 4 C 1.53046 * 109.55326 * 239.93405 * 2 1 3 5 5 N 1.46851 * 109.57099 * 180.94761 * 4 2 1 6 6 C 1.46899 * 110.99657 * 185.80957 * 5 4 2 7 7 C 1.46848 * 111.19911 * 61.70597 * 5 4 2 8 8 C 1.53035 * 109.52559 * 298.25787 * 7 5 4 9 9 C 1.53116 * 109.27841 * 59.17990 * 8 7 5 10 10 H 1.08999 * 109.52373 * 62.30864 * 9 8 7 11 11 N 1.46499 * 109.52286 * 182.43944 * 9 8 7 12 12 C 1.46496 * 120.00068 * 59.87732 * 11 9 8 13 13 S 1.65603 * 120.00163 * 239.87101 * 11 9 8 14 14 O 1.42101 * 106.39859 * 336.46510 * 13 11 9 15 15 O 1.42091 * 106.40103 * 203.54324 * 13 11 9 16 16 N 1.65596 * 107.21528 * 89.99962 * 13 11 9 17 17 C 1.46502 * 120.00234 * 270.00187 * 16 13 11 18 18 C 1.46506 * 119.99991 * 90.00048 * 16 13 11 19 19 C 1.50698 * 109.47006 * 94.99664 * 18 16 13 20 20 H 1.08005 * 119.99819 * 0.02562 * 19 18 16 21 21 C 1.37875 * 120.00046 * 179.97438 * 19 18 16 22 22 N 1.31511 * 120.00192 * 0.02562 * 21 19 18 23 23 Si 1.86798 * 119.99979 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47297 * 180.02562 * 23 21 19 25 25 H 1.48503 * 109.47261 * 60.00310 * 23 21 19 26 26 H 1.48500 * 109.47454 * 300.00304 * 23 21 19 27 27 H 1.09000 * 109.47257 * 299.89752 * 1 2 3 28 28 H 1.09005 * 109.47206 * 59.89854 * 1 2 3 29 29 H 1.08996 * 109.47230 * 179.90064 * 1 2 3 30 30 H 1.08998 * 109.46304 * 60.90021 * 4 2 1 31 31 H 1.08998 * 109.40747 * 300.95677 * 4 2 1 32 32 H 1.09005 * 109.47043 * 299.73367 * 6 5 4 33 33 H 1.08997 * 109.47420 * 59.73867 * 6 5 4 34 34 H 1.08999 * 109.46862 * 179.74556 * 6 5 4 35 35 H 1.09004 * 109.45548 * 178.23836 * 7 5 4 36 36 H 1.09001 * 109.45808 * 58.27632 * 7 5 4 37 37 H 1.09003 * 109.50116 * 299.24315 * 8 7 5 38 38 H 1.08992 * 109.50206 * 179.12249 * 8 7 5 39 39 H 1.09003 * 109.47035 * 270.00188 * 12 11 9 40 40 H 1.09005 * 109.47027 * 29.99862 * 12 11 9 41 41 H 1.08995 * 109.47810 * 149.99621 * 12 11 9 42 42 H 1.08995 * 109.47273 * 269.99828 * 17 16 13 43 43 H 1.08996 * 109.47199 * 30.00135 * 17 16 13 44 44 H 1.09003 * 109.46681 * 149.99950 * 17 16 13 45 45 H 1.09001 * 109.47068 * 335.00329 * 18 16 13 46 46 H 1.08993 * 109.47068 * 214.99783 * 18 16 13 47 47 H 0.97001 * 119.99934 * 359.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8945 1.0273 0.0000 4 6 2.0423 -0.7225 -1.2482 5 7 3.5106 -0.7426 -1.2371 6 6 4.0387 -1.3063 -2.4867 7 6 4.0230 -1.4744 -0.0716 8 6 3.5712 -0.7734 1.2115 9 6 2.0413 -0.7239 1.2487 10 1 1.6443 -1.7388 1.2694 11 7 1.6037 -0.0025 2.4464 12 6 2.0094 1.3901 2.6518 13 16 0.6504 -0.7612 3.5680 14 8 -0.0099 -1.8176 2.8845 15 8 -0.0413 0.2648 4.2665 16 7 1.6616 -1.4759 4.6676 17 6 2.1247 -2.8490 4.4524 18 6 2.0930 -0.7350 5.8556 19 6 1.1864 -1.0684 7.0122 20 1 0.3706 -1.7630 6.8761 21 6 1.3989 -0.4874 8.2444 22 7 2.3924 0.3580 8.4103 23 14 0.2754 -0.9013 9.6783 24 1 0.7126 -0.1502 10.8825 25 1 0.3402 -2.3592 9.9532 26 1 -1.1200 -0.5230 9.3392 27 1 -0.3634 0.5122 0.8909 28 1 -0.3634 0.5154 -0.8891 29 1 -0.3633 -1.0276 -0.0018 30 1 1.6929 -0.2007 -2.1390 31 1 1.6652 -1.7452 -1.2550 32 1 3.6799 -2.3289 -2.6042 33 1 3.7000 -0.7033 -3.3291 34 1 5.1282 -1.3052 -2.4538 35 1 5.1121 -1.4986 -0.1082 36 1 3.6365 -2.4935 -0.0841 37 1 3.9687 0.2414 1.2311 38 1 3.9385 -1.3255 2.0765 39 1 2.9503 1.4171 3.2014 40 1 2.1391 1.8771 1.6852 41 1 1.2407 1.9123 3.2214 42 1 1.4259 -3.5450 4.9163 43 1 2.1815 -3.0499 3.3827 44 1 3.1116 -2.9736 4.8984 45 1 2.0455 0.3351 5.6535 46 1 3.1171 -1.0126 6.1049 47 1 2.9760 0.5726 7.6658 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408238666.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:43 Heat of formation + Delta-G solvation = -97.142697 kcal Electronic energy + Delta-G solvation = -27462.360923 eV Core-core repulsion = 23805.820909 eV Total energy + Delta-G solvation = -3656.540014 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.62478 -38.44089 -37.46307 -37.23097 -36.93549 -34.72180 -33.95339 -32.48992 -29.38911 -28.11948 -27.84977 -26.69571 -26.22364 -24.46853 -23.63444 -22.57089 -20.60806 -20.11537 -19.43346 -18.50515 -18.46479 -17.58137 -16.63795 -16.33922 -15.94137 -15.71344 -15.65328 -15.62099 -15.42481 -14.97968 -14.57349 -14.39623 -14.22868 -14.09347 -13.73381 -13.60250 -13.43870 -13.40294 -13.30783 -13.24363 -13.08273 -12.97790 -12.83755 -12.73090 -12.45922 -12.42432 -12.32895 -12.09307 -11.93993 -11.74635 -11.66644 -11.43660 -11.27344 -10.58814 -10.03947 -9.79340 -9.28844 -8.68134 -6.41849 -0.48082 1.50525 1.58674 1.78261 1.90151 2.42703 2.54698 2.96742 3.11149 3.25693 3.50303 3.77401 3.85976 3.87763 4.05131 4.08845 4.32595 4.36297 4.44899 4.50182 4.51991 4.54806 4.59490 4.60731 4.65700 4.75291 4.77420 4.77941 4.83317 4.87702 4.90304 4.91161 4.98918 5.07320 5.11839 5.17431 5.23303 5.24257 5.42947 5.51846 5.75967 5.84327 6.09971 6.13666 6.17469 6.51757 7.33887 8.69728 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.025455 B = 0.003855 C = 0.003714 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1099.713688 B = 7260.941837 C = 7536.504488 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.089 4.089 3 H 0.092 0.908 4 C 0.066 3.934 5 N -0.553 5.553 6 C 0.025 3.975 7 C 0.060 3.940 8 C -0.123 4.123 9 C 0.147 3.853 10 H 0.082 0.918 11 N -0.995 5.995 12 C 0.084 3.916 13 S 2.788 3.212 14 O -1.002 7.002 15 O -1.009 7.009 16 N -1.002 6.002 17 C 0.102 3.898 18 C 0.261 3.739 19 C -0.627 4.627 20 H 0.040 0.960 21 C -0.026 4.026 22 N -0.928 5.928 23 Si 1.108 2.892 24 H -0.275 1.275 25 H -0.265 1.265 26 H -0.280 1.280 27 H 0.034 0.966 28 H 0.081 0.919 29 H 0.050 0.950 30 H 0.094 0.906 31 H 0.033 0.967 32 H 0.026 0.974 33 H 0.077 0.923 34 H 0.076 0.924 35 H 0.092 0.908 36 H 0.035 0.965 37 H 0.081 0.919 38 H 0.070 0.930 39 H 0.058 0.942 40 H 0.105 0.895 41 H 0.061 0.939 42 H 0.042 0.958 43 H 0.081 0.919 44 H 0.080 0.920 45 H 0.011 0.989 46 H 0.024 0.976 47 H 0.259 0.741 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.039 -2.761 -22.363 23.089 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 H 0.110 0.890 4 C -0.062 4.062 5 N -0.277 5.277 6 C -0.122 4.122 7 C -0.069 4.069 8 C -0.162 4.162 9 C 0.041 3.959 10 H 0.100 0.900 11 N -0.836 5.836 12 C -0.061 4.061 13 S 2.798 3.202 14 O -0.986 6.986 15 O -0.993 6.993 16 N -0.843 5.843 17 C -0.044 4.044 18 C 0.137 3.863 19 C -0.666 4.666 20 H 0.058 0.942 21 C -0.225 4.225 22 N -0.565 5.565 23 Si 0.929 3.071 24 H -0.200 1.200 25 H -0.190 1.190 26 H -0.206 1.206 27 H 0.053 0.947 28 H 0.100 0.900 29 H 0.069 0.931 30 H 0.112 0.888 31 H 0.051 0.949 32 H 0.045 0.955 33 H 0.095 0.905 34 H 0.095 0.905 35 H 0.110 0.890 36 H 0.053 0.947 37 H 0.100 0.900 38 H 0.089 0.911 39 H 0.077 0.923 40 H 0.123 0.877 41 H 0.079 0.921 42 H 0.061 0.939 43 H 0.099 0.901 44 H 0.098 0.902 45 H 0.029 0.971 46 H 0.042 0.958 47 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 3.989 -1.999 -20.704 21.180 hybrid contribution 0.253 -1.055 -1.262 1.664 sum 4.242 -3.054 -21.966 22.579 Atomic orbital electron populations 1.21819 0.95149 1.01932 1.01932 1.21439 0.95271 1.01175 0.93089 0.88997 1.22106 0.87226 0.99018 0.97882 1.61939 1.08011 1.54544 1.03253 1.22393 1.01037 0.97698 0.91093 1.22080 1.00887 0.94704 0.89235 1.21955 0.93585 1.02934 0.97748 1.21200 0.95697 0.95227 0.83735 0.90029 1.57769 1.69842 1.22097 1.33858 1.21624 1.00393 0.80179 1.03901 1.01554 0.73906 0.72507 0.72223 1.93496 1.73018 1.57163 1.74927 1.93544 1.72117 1.59703 1.73901 1.57525 1.68005 1.23389 1.35355 1.21422 1.00647 0.80982 1.01320 1.18729 0.95030 0.90103 0.82454 1.22658 1.16355 1.29735 0.97888 0.94158 1.27167 0.99131 0.93093 1.03114 1.70927 1.17107 1.33441 1.34984 0.83065 0.73882 0.77189 0.72953 1.19967 1.19013 1.20621 0.94708 0.89997 0.93085 0.88814 0.94880 0.95508 0.90460 0.90503 0.88968 0.94684 0.90000 0.91087 0.92290 0.87680 0.92052 0.93943 0.90071 0.90168 0.97079 0.95766 0.93109 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.38 9.07 71.98 0.65 -2.73 16 2 C -0.09 -1.82 2.28 -10.74 -0.02 -1.84 16 3 H 0.09 1.77 6.57 -2.39 -0.02 1.76 16 4 C 0.07 1.10 4.75 86.33 0.41 1.51 16 5 N -0.55 -8.88 4.91 -922.56 -4.53 -13.41 16 6 C 0.03 0.30 9.59 127.69 1.22 1.52 16 7 C 0.06 0.98 5.46 86.32 0.47 1.45 16 8 C -0.12 -2.46 5.41 30.64 0.17 -2.30 16 9 C 0.15 3.59 1.99 45.07 0.09 3.68 16 10 H 0.08 2.19 6.92 -2.39 -0.02 2.17 16 11 N -1.00 -30.17 2.49 -516.11 -1.28 -31.45 16 12 C 0.08 2.27 9.67 127.77 1.24 3.51 16 13 S 2.79 115.06 6.01 -56.49 -0.34 114.73 16 14 O -1.00 -42.11 15.78 -128.00 -2.02 -44.13 16 15 O -1.01 -50.87 15.71 -128.00 -2.01 -52.88 16 16 N -1.00 -42.83 3.23 -543.23 -1.75 -44.59 16 17 C 0.10 3.52 10.33 127.77 1.32 4.84 16 18 C 0.26 13.36 4.43 85.63 0.38 13.74 16 19 C -0.63 -36.69 9.38 25.60 0.24 -36.45 16 20 H 0.04 2.40 7.81 -2.91 -0.02 2.38 16 21 C -0.03 -1.51 5.46 84.65 0.46 -1.05 16 22 N -0.93 -56.32 13.65 21.45 0.29 -56.03 16 23 Si 1.11 51.74 29.90 68.60 2.05 53.80 16 24 H -0.27 -12.49 7.11 99.48 0.71 -11.78 16 25 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 26 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 27 H 0.03 0.92 7.68 -2.39 -0.02 0.90 16 28 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 29 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.09 1.28 8.12 -2.39 -0.02 1.26 16 31 H 0.03 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.03 0.31 8.14 -2.38 -0.02 0.29 16 33 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.08 0.78 8.10 -2.39 -0.02 0.76 16 35 H 0.09 1.28 8.09 -2.38 -0.02 1.26 16 36 H 0.03 0.58 8.14 -2.39 -0.02 0.57 16 37 H 0.08 1.62 7.60 -2.39 -0.02 1.60 16 38 H 0.07 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.06 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.10 2.13 6.38 -2.38 -0.02 2.11 16 41 H 0.06 1.93 7.02 -2.39 -0.02 1.91 16 42 H 0.04 1.52 8.14 -2.39 -0.02 1.50 16 43 H 0.08 2.28 7.79 -2.39 -0.02 2.26 16 44 H 0.08 2.52 7.94 -2.39 -0.02 2.50 16 45 H 0.01 0.61 7.48 -2.39 -0.02 0.59 16 46 H 0.02 1.23 7.83 -2.39 -0.02 1.21 16 47 H 0.26 15.57 7.22 -92.71 -0.67 14.90 16 Total: -1.00 -73.78 376.66 -1.94 -75.72 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 1.02 Total: 12.34 kcal Atomic # 6 Polarization: -20.73 SS G_CDS: 6.63 Total: -14.11 kcal Atomic # 7 Polarization: -138.20 SS G_CDS: -7.27 Total: -145.47 kcal Atomic # 8 Polarization: -92.98 SS G_CDS: -4.03 Total: -97.01 kcal Atomic # 14 Polarization: 51.74 SS G_CDS: 2.05 Total: 53.80 kcal Atomic # 16 Polarization: 115.06 SS G_CDS: -0.34 Total: 114.73 kcal Total: -73.78 -1.94 -75.72 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408238666.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.421 kcal (2) G-P(sol) polarization free energy of solvation -73.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.143 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds