Wall clock time and date at job start Fri Apr 10 2020 18:18:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47372 * 2 1 4 4 N 1.46909 * 109.46665 * 119.99708 * 2 1 3 5 5 C 1.46846 * 111.00243 * 56.04848 * 4 2 1 6 6 C 1.53036 * 109.52162 * 174.15828 * 5 4 2 7 7 C 1.53118 * 109.28007 * 59.18140 * 6 5 4 8 8 C 1.53123 * 109.15585 * 302.34276 * 7 6 5 9 9 H 1.08997 * 109.50390 * 297.67422 * 8 7 6 10 10 N 1.46502 * 109.49856 * 177.59860 * 8 7 6 11 11 S 1.65592 * 120.00285 * 95.00154 * 10 8 7 12 12 O 1.42102 * 106.40352 * 178.53825 * 11 10 8 13 13 O 1.42101 * 106.40284 * 311.45895 * 11 10 8 14 14 N 1.65600 * 107.21919 * 64.99719 * 11 10 8 15 15 C 1.46508 * 119.99891 * 270.00001 * 14 11 10 16 16 C 1.46501 * 120.00221 * 90.00253 * 14 11 10 17 17 C 1.50701 * 109.47386 * 94.99816 * 16 14 11 18 18 H 1.08002 * 119.99455 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00019 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00045 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99920 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46978 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46947 * 119.99620 * 21 19 17 24 24 H 1.48497 * 109.47177 * 240.00063 * 21 19 17 25 25 C 1.46846 * 111.00162 * 291.83320 * 4 2 1 26 26 H 1.09003 * 109.47331 * 300.00282 * 1 2 3 27 27 H 1.08993 * 109.46838 * 60.00162 * 1 2 3 28 28 H 1.09006 * 109.46875 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47296 * 239.99559 * 2 1 3 30 30 H 1.08996 * 109.47204 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46380 * 300.00084 * 3 2 1 32 32 H 1.09003 * 109.47123 * 59.99590 * 3 2 1 33 33 H 1.08998 * 109.45759 * 294.17597 * 5 4 2 34 34 H 1.09004 * 109.46280 * 54.13953 * 5 4 2 35 35 H 1.09008 * 109.49869 * 179.11730 * 6 5 4 36 36 H 1.09002 * 109.50237 * 299.19577 * 6 5 4 37 37 H 1.08993 * 109.52399 * 62.24659 * 7 6 5 38 38 H 1.08996 * 109.51997 * 182.43867 * 7 6 5 39 39 H 0.97002 * 119.99646 * 274.99755 * 10 8 7 40 40 H 1.08994 * 109.46907 * 90.00320 * 15 14 11 41 41 H 1.09003 * 109.46698 * 210.00034 * 15 14 11 42 42 H 1.08994 * 109.47269 * 329.99911 * 15 14 11 43 43 H 1.09003 * 109.47012 * 215.00055 * 16 14 11 44 44 H 1.08998 * 109.46893 * 335.00037 * 16 14 11 45 45 H 0.97005 * 119.99729 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.46373 * 305.86398 * 25 4 2 47 47 H 1.08998 * 109.45881 * 65.82485 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.4731 -2.0530 1.2818 6 6 2.1149 -2.7916 2.4585 7 6 1.8268 -2.0268 3.7532 8 6 2.3632 -0.5985 3.6231 9 1 3.4444 -0.6267 3.4885 10 7 2.0408 0.1574 4.8359 11 16 3.1516 0.2743 6.0585 12 8 2.5596 1.0877 7.0621 13 8 3.6192 -1.0451 6.3033 14 7 4.4430 1.1260 5.4677 15 6 5.5521 0.4201 4.8212 16 6 4.4765 2.5854 5.5915 17 6 5.2497 2.9671 6.8274 18 1 5.6741 2.1993 7.4574 19 6 5.4153 4.2964 7.1539 20 7 4.8989 5.2312 6.3864 21 14 6.3744 4.7695 8.6855 22 1 6.8499 3.5410 9.3709 23 1 7.5410 5.6041 8.3008 24 1 5.4954 5.5395 9.6018 25 6 1.7143 0.0766 2.4127 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.3944 -2.0027 1.4293 34 1 1.6885 -2.5874 0.3564 35 1 1.6975 -3.7962 2.5287 36 1 3.1921 -2.8550 2.3045 37 1 0.7512 -1.9975 3.9274 38 1 2.3184 -2.5259 4.5882 39 1 1.1767 0.5894 4.9228 40 1 5.3539 0.3329 3.7530 41 1 6.4763 0.9773 4.9750 42 1 5.6514 -0.5750 5.2547 43 1 4.9603 3.0135 4.7135 44 1 3.4583 2.9670 5.6677 45 1 5.0157 6.1664 6.6159 46 1 2.1047 1.0889 2.3088 47 1 0.6344 0.1169 2.5549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000408320326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:48 Heat of formation + Delta-G solvation = -77.436929 kcal Electronic energy + Delta-G solvation = -26966.670040 eV Core-core repulsion = 23310.984532 eV Total energy + Delta-G solvation = -3655.685508 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.81562 -36.64408 -36.00530 -35.44338 -35.11899 -33.51173 -32.41102 -30.36058 -29.16311 -27.75002 -27.30319 -25.02868 -24.56863 -22.74012 -22.26324 -20.84091 -19.70397 -18.64536 -17.29312 -16.98258 -16.55634 -16.19958 -15.54454 -15.22472 -14.85328 -14.71324 -14.44036 -14.24123 -13.95608 -13.67425 -13.35432 -13.24837 -12.97933 -12.91613 -12.31329 -12.19411 -12.14127 -11.95702 -11.73133 -11.58934 -11.54623 -11.34802 -11.31955 -11.13667 -11.06536 -11.05057 -10.87445 -10.71531 -10.65244 -10.50727 -10.39702 -10.00568 -9.72315 -9.25947 -8.43374 -8.43032 -8.02972 -6.04906 -4.08526 1.27022 3.32319 3.39767 3.40899 3.46160 3.82648 4.16847 4.46491 4.63697 4.67270 4.76219 4.82209 4.93481 5.01988 5.07176 5.11530 5.18508 5.30615 5.36929 5.40002 5.44126 5.53210 5.57121 5.59983 5.70865 5.71180 5.74958 5.78211 5.91377 5.99862 6.03630 6.06011 6.11679 6.27624 6.28697 6.40285 6.60182 6.92082 6.96505 7.14149 7.29240 7.45477 7.64710 7.93098 8.22729 8.94295 9.56717 11.03742 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.003949 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.739085 B = 7088.853768 C = 7979.963535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.079 3.921 3 C -0.153 4.153 4 N -0.529 5.529 5 C 0.052 3.948 6 C -0.115 4.115 7 C -0.141 4.141 8 C 0.162 3.838 9 H 0.091 0.909 10 N -1.130 6.130 11 S 2.782 3.218 12 O -0.966 6.966 13 O -0.996 6.996 14 N -0.995 5.995 15 C 0.093 3.907 16 C 0.258 3.742 17 C -0.528 4.528 18 H 0.061 0.939 19 C 0.062 3.938 20 N -0.896 5.896 21 Si 0.896 3.104 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.282 1.282 25 C 0.044 3.956 26 H 0.057 0.943 27 H 0.060 0.940 28 H 0.057 0.943 29 H 0.083 0.917 30 H 0.067 0.933 31 H 0.059 0.941 32 H 0.061 0.939 33 H 0.036 0.964 34 H 0.073 0.927 35 H 0.069 0.931 36 H 0.074 0.926 37 H 0.062 0.938 38 H 0.080 0.920 39 H 0.410 0.590 40 H 0.040 0.960 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.035 0.965 44 H 0.037 0.963 45 H 0.263 0.737 46 H 0.091 0.909 47 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.019 -12.746 -14.716 21.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.030 4.030 3 C -0.210 4.210 4 N -0.254 5.254 5 C -0.076 4.076 6 C -0.154 4.154 7 C -0.180 4.180 8 C 0.054 3.946 9 H 0.109 0.891 10 N -0.887 5.887 11 S 2.790 3.210 12 O -0.950 6.950 13 O -0.980 6.980 14 N -0.838 5.838 15 C -0.053 4.053 16 C 0.136 3.864 17 C -0.567 4.567 18 H 0.079 0.921 19 C -0.140 4.140 20 N -0.536 5.536 21 Si 0.724 3.276 22 H -0.196 1.196 23 H -0.210 1.210 24 H -0.208 1.208 25 C -0.086 4.086 26 H 0.076 0.924 27 H 0.079 0.921 28 H 0.076 0.924 29 H 0.101 0.899 30 H 0.086 0.914 31 H 0.078 0.922 32 H 0.080 0.920 33 H 0.055 0.945 34 H 0.092 0.908 35 H 0.087 0.913 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.099 0.901 39 H 0.242 0.758 40 H 0.059 0.941 41 H 0.096 0.904 42 H 0.084 0.916 43 H 0.053 0.947 44 H 0.055 0.945 45 H 0.072 0.928 46 H 0.109 0.891 47 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -7.414 -13.027 -13.902 20.444 hybrid contribution -0.794 0.893 0.495 1.293 sum -8.208 -12.135 -13.408 19.859 Atomic orbital electron populations 1.22505 0.97777 1.01975 1.02448 1.21699 0.92538 0.95517 0.93215 1.21978 1.02331 0.94668 1.02037 1.62117 1.59141 1.02187 1.01907 1.22159 0.96904 0.89440 0.99119 1.21562 1.02035 0.98154 0.93605 1.22161 1.01532 0.95728 0.98577 1.20607 1.00317 0.90120 0.83556 0.89060 1.56365 1.31467 1.66927 1.33948 1.01938 0.72979 0.72984 0.73143 1.93640 1.77276 1.69253 1.54802 1.93522 1.81189 1.38965 1.84279 1.57575 1.32246 1.18990 1.74992 1.21394 0.91493 0.96839 0.95590 1.19038 0.98092 0.71792 0.97494 1.21548 1.33988 0.92114 1.09070 0.92122 1.24927 0.95813 0.96298 0.96994 1.69931 1.45197 1.00328 1.38096 0.86465 0.79547 0.78567 0.83011 1.19625 1.20970 1.20820 1.22471 0.98558 0.98503 0.89024 0.92402 0.92096 0.92434 0.89871 0.91439 0.92245 0.92029 0.94535 0.90807 0.91261 0.90733 0.91940 0.90105 0.75767 0.94144 0.90403 0.91581 0.94698 0.94527 0.92786 0.89097 0.94219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.48 8.47 37.16 0.31 -1.16 16 2 C 0.08 0.68 3.10 -67.71 -0.21 0.47 16 3 C -0.15 -1.38 8.69 37.16 0.32 -1.06 16 4 N -0.53 -5.32 4.71 -226.69 -1.07 -6.38 16 5 C 0.05 0.46 4.77 -3.84 -0.02 0.44 16 6 C -0.12 -1.09 6.09 -26.65 -0.16 -1.25 16 7 C -0.14 -1.64 5.61 -26.61 -0.15 -1.78 16 8 C 0.16 2.09 2.84 -67.85 -0.19 1.89 16 9 H 0.09 1.24 6.61 -51.93 -0.34 0.90 16 10 N -1.13 -16.72 5.53 -4.82 -0.03 -16.75 16 11 S 2.78 55.04 6.01 -107.50 -0.65 54.39 16 12 O -0.97 -23.21 17.11 -57.17 -0.98 -24.18 16 13 O -1.00 -20.51 16.05 -57.17 -0.92 -21.43 16 14 N -1.00 -20.60 3.23 -123.05 -0.40 -20.99 16 15 C 0.09 1.61 10.10 59.85 0.60 2.22 16 16 C 0.26 6.46 5.08 -5.19 -0.03 6.43 16 17 C -0.53 -14.91 9.38 -34.44 -0.32 -15.24 16 18 H 0.06 1.73 7.81 -52.49 -0.41 1.32 16 19 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 20 N -0.90 -26.19 13.29 55.43 0.74 -25.45 16 21 Si 0.90 21.97 29.54 -169.99 -5.02 16.94 16 22 H -0.27 -6.60 7.11 56.52 0.40 -6.20 16 23 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 24 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 25 C 0.04 0.49 4.20 -3.84 -0.02 0.47 16 26 H 0.06 0.50 6.75 -51.93 -0.35 0.15 16 27 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.43 6.48 -51.93 -0.34 0.09 16 29 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.61 6.19 -51.93 -0.32 0.29 16 33 H 0.04 0.32 6.59 -51.93 -0.34 -0.03 16 34 H 0.07 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.07 0.55 8.14 -51.92 -0.42 0.13 16 36 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 38 H 0.08 1.07 7.69 -51.93 -0.40 0.67 16 39 H 0.41 5.33 8.84 -34.46 -0.30 5.03 16 40 H 0.04 0.58 7.41 -51.93 -0.38 0.20 16 41 H 0.08 1.37 8.07 -51.93 -0.42 0.95 16 42 H 0.07 1.08 7.02 -51.93 -0.36 0.72 16 43 H 0.03 0.88 8.11 -51.93 -0.42 0.46 16 44 H 0.04 0.97 7.61 -51.93 -0.40 0.58 16 45 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 46 H 0.09 1.09 5.84 -51.93 -0.30 0.79 16 47 H 0.04 0.42 6.81 -51.93 -0.35 0.07 16 LS Contribution 371.82 15.07 5.60 5.60 Total: -1.00 -33.10 371.82 -10.63 -43.73 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -7.96 Total: 1.43 kcal Atomic # 6 Polarization: -6.95 SS G_CDS: 0.05 Total: -6.91 kcal Atomic # 7 Polarization: -68.82 SS G_CDS: -0.76 Total: -69.58 kcal Atomic # 8 Polarization: -43.72 SS G_CDS: -1.90 Total: -45.62 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.94 kcal Atomic # 16 Polarization: 55.04 SS G_CDS: -0.65 Total: 54.39 kcal Total LS contribution 5.60 Total: 5.60 kcal Total: -33.10 -10.63 -43.73 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408320326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.705 kcal (2) G-P(sol) polarization free energy of solvation -33.099 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.804 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds