Wall clock time and date at job start Fri Apr 10 2020 18:18:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53001 * 109.47372 * 2 1 4 4 N 1.46909 * 109.46665 * 119.99708 * 2 1 3 5 5 C 1.46846 * 111.00243 * 56.04848 * 4 2 1 6 6 C 1.53036 * 109.52162 * 174.15828 * 5 4 2 7 7 C 1.53118 * 109.28007 * 59.18140 * 6 5 4 8 8 C 1.53123 * 109.15585 * 302.34276 * 7 6 5 9 9 H 1.08997 * 109.50390 * 297.67422 * 8 7 6 10 10 N 1.46502 * 109.49856 * 177.59860 * 8 7 6 11 11 S 1.65592 * 120.00285 * 95.00154 * 10 8 7 12 12 O 1.42102 * 106.40352 * 178.53825 * 11 10 8 13 13 O 1.42101 * 106.40284 * 311.45895 * 11 10 8 14 14 N 1.65600 * 107.21919 * 64.99719 * 11 10 8 15 15 C 1.46508 * 119.99891 * 270.00001 * 14 11 10 16 16 C 1.46501 * 120.00221 * 90.00253 * 14 11 10 17 17 C 1.50701 * 109.47386 * 94.99816 * 16 14 11 18 18 H 1.08002 * 119.99455 * 0.02562 * 17 16 14 19 19 C 1.37872 * 120.00019 * 180.02562 * 17 16 14 20 20 N 1.31513 * 120.00045 * 359.97438 * 19 17 16 21 21 Si 1.86804 * 119.99920 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.46978 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46947 * 119.99620 * 21 19 17 24 24 H 1.48497 * 109.47177 * 240.00063 * 21 19 17 25 25 C 1.46846 * 111.00162 * 291.83320 * 4 2 1 26 26 H 1.09003 * 109.47331 * 300.00282 * 1 2 3 27 27 H 1.08993 * 109.46838 * 60.00162 * 1 2 3 28 28 H 1.09006 * 109.46875 * 180.02562 * 1 2 3 29 29 H 1.08993 * 109.47296 * 239.99559 * 2 1 3 30 30 H 1.08996 * 109.47204 * 179.97438 * 3 2 1 31 31 H 1.08997 * 109.46380 * 300.00084 * 3 2 1 32 32 H 1.09003 * 109.47123 * 59.99590 * 3 2 1 33 33 H 1.08998 * 109.45759 * 294.17597 * 5 4 2 34 34 H 1.09004 * 109.46280 * 54.13953 * 5 4 2 35 35 H 1.09008 * 109.49869 * 179.11730 * 6 5 4 36 36 H 1.09002 * 109.50237 * 299.19577 * 6 5 4 37 37 H 1.08993 * 109.52399 * 62.24659 * 7 6 5 38 38 H 1.08996 * 109.51997 * 182.43867 * 7 6 5 39 39 H 0.97002 * 119.99646 * 274.99755 * 10 8 7 40 40 H 1.08994 * 109.46907 * 90.00320 * 15 14 11 41 41 H 1.09003 * 109.46698 * 210.00034 * 15 14 11 42 42 H 1.08994 * 109.47269 * 329.99911 * 15 14 11 43 43 H 1.09003 * 109.47012 * 215.00055 * 16 14 11 44 44 H 1.08998 * 109.46893 * 335.00037 * 16 14 11 45 45 H 0.97005 * 119.99729 * 180.02562 * 20 19 17 46 46 H 1.08999 * 109.46373 * 305.86398 * 25 4 2 47 47 H 1.08998 * 109.45881 * 65.82485 * 25 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1996 5 6 1.4731 -2.0530 1.2818 6 6 2.1149 -2.7916 2.4585 7 6 1.8268 -2.0268 3.7532 8 6 2.3632 -0.5985 3.6231 9 1 3.4444 -0.6267 3.4885 10 7 2.0408 0.1574 4.8359 11 16 3.1516 0.2743 6.0585 12 8 2.5596 1.0877 7.0621 13 8 3.6192 -1.0451 6.3033 14 7 4.4430 1.1260 5.4677 15 6 5.5521 0.4201 4.8212 16 6 4.4765 2.5854 5.5915 17 6 5.2497 2.9671 6.8274 18 1 5.6741 2.1993 7.4574 19 6 5.4153 4.2964 7.1539 20 7 4.8989 5.2312 6.3864 21 14 6.3744 4.7695 8.6855 22 1 6.8499 3.5410 9.3709 23 1 7.5410 5.6041 8.3008 24 1 5.4954 5.5395 9.6018 25 6 1.7143 0.0766 2.4127 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 1.8934 -0.5139 -0.8899 30 1 3.1300 1.4425 0.0005 31 1 1.6767 1.9562 -0.8900 32 1 1.6767 1.9564 0.8900 33 1 0.3944 -2.0027 1.4293 34 1 1.6885 -2.5874 0.3564 35 1 1.6975 -3.7962 2.5287 36 1 3.1921 -2.8550 2.3045 37 1 0.7512 -1.9975 3.9274 38 1 2.3184 -2.5259 4.5882 39 1 1.1767 0.5894 4.9228 40 1 5.3539 0.3329 3.7530 41 1 6.4763 0.9773 4.9750 42 1 5.6514 -0.5750 5.2547 43 1 4.9603 3.0135 4.7135 44 1 3.4583 2.9670 5.6677 45 1 5.0157 6.1664 6.6159 46 1 2.1047 1.0889 2.3088 47 1 0.6344 0.1169 2.5549 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000408320326.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:47 Heat of formation + Delta-G solvation = -102.688546 kcal Electronic energy + Delta-G solvation = -26967.765032 eV Core-core repulsion = 23310.984532 eV Total energy + Delta-G solvation = -3656.780500 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64218 -38.28810 -37.24540 -36.97987 -36.83992 -34.52049 -34.42397 -31.13501 -30.14325 -29.66738 -27.99646 -26.77921 -25.38328 -24.21153 -23.65010 -21.64391 -20.79964 -19.90739 -18.94016 -18.36662 -18.30192 -17.75440 -17.00794 -16.42668 -16.04765 -15.80194 -15.49664 -15.24584 -15.04145 -14.95371 -14.86759 -14.42368 -14.10701 -13.96777 -13.83798 -13.67350 -13.34176 -13.14995 -13.07839 -13.02453 -12.92376 -12.87187 -12.56075 -12.50615 -12.43720 -12.37129 -12.08062 -11.99262 -11.90881 -11.72489 -11.68120 -11.46364 -11.34139 -10.60383 -10.42354 -9.78066 -9.18069 -8.20556 -6.32275 -0.31502 1.38477 1.40855 1.52635 2.00237 2.40380 2.62343 2.99685 3.10542 3.48484 3.73317 3.82152 3.95741 4.03796 4.12446 4.18159 4.28878 4.29512 4.43458 4.47671 4.60280 4.69413 4.71248 4.75745 4.77186 4.82407 4.88075 4.97238 4.99059 5.05807 5.06214 5.12082 5.18089 5.20234 5.32321 5.36498 5.39762 5.46455 5.49260 5.69621 5.85590 6.06778 6.11703 6.20859 6.24818 6.76200 7.36694 8.87209 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.017947 B = 0.003949 C = 0.003508 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1559.739085 B = 7088.853768 C = 7979.963535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.079 3.921 3 C -0.152 4.152 4 N -0.538 5.538 5 C 0.052 3.948 6 C -0.111 4.111 7 C -0.139 4.139 8 C 0.155 3.845 9 H 0.084 0.916 10 N -1.115 6.115 11 S 2.798 3.202 12 O -1.012 7.012 13 O -1.005 7.005 14 N -1.002 6.002 15 C 0.088 3.912 16 C 0.274 3.726 17 C -0.550 4.550 18 H 0.051 0.949 19 C 0.013 3.987 20 N -0.924 5.924 21 Si 0.956 3.044 22 H -0.270 1.270 23 H -0.269 1.269 24 H -0.279 1.279 25 C 0.051 3.949 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.064 0.936 29 H 0.095 0.905 30 H 0.056 0.944 31 H 0.072 0.928 32 H 0.048 0.952 33 H 0.043 0.957 34 H 0.090 0.910 35 H 0.088 0.912 36 H 0.069 0.931 37 H 0.071 0.929 38 H 0.062 0.938 39 H 0.420 0.580 40 H 0.070 0.930 41 H 0.071 0.929 42 H 0.075 0.925 43 H 0.029 0.971 44 H 0.016 0.984 45 H 0.267 0.733 46 H 0.080 0.920 47 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.279 -13.823 -16.012 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.242 4.242 2 C -0.029 4.029 3 C -0.209 4.209 4 N -0.263 5.263 5 C -0.075 4.075 6 C -0.150 4.150 7 C -0.179 4.179 8 C 0.048 3.952 9 H 0.102 0.898 10 N -0.877 5.877 11 S 2.806 3.194 12 O -0.996 6.996 13 O -0.988 6.988 14 N -0.844 5.844 15 C -0.057 4.057 16 C 0.150 3.850 17 C -0.589 4.589 18 H 0.069 0.931 19 C -0.187 4.187 20 N -0.563 5.563 21 Si 0.781 3.219 22 H -0.195 1.195 23 H -0.194 1.194 24 H -0.205 1.205 25 C -0.079 4.079 26 H 0.066 0.934 27 H 0.089 0.911 28 H 0.083 0.917 29 H 0.113 0.887 30 H 0.075 0.925 31 H 0.091 0.909 32 H 0.067 0.933 33 H 0.061 0.939 34 H 0.109 0.891 35 H 0.106 0.894 36 H 0.088 0.912 37 H 0.090 0.910 38 H 0.080 0.920 39 H 0.255 0.745 40 H 0.089 0.911 41 H 0.090 0.910 42 H 0.093 0.907 43 H 0.047 0.953 44 H 0.034 0.966 45 H 0.076 0.924 46 H 0.098 0.902 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges -7.664 -14.122 -15.212 22.127 hybrid contribution -0.744 1.163 0.815 1.603 sum -8.408 -12.960 -14.397 21.117 Atomic orbital electron populations 1.22452 0.96931 1.02407 1.02416 1.21748 0.93176 0.95049 0.92918 1.21969 1.01627 0.95263 1.02088 1.62121 1.59763 1.02756 1.01633 1.22210 0.97102 0.88662 0.99540 1.21564 1.02007 0.98868 0.92513 1.22141 1.01771 0.94676 0.99297 1.20847 1.00313 0.90932 0.83114 0.89782 1.55905 1.30759 1.67133 1.33854 1.01217 0.72841 0.72238 0.73073 1.93572 1.78133 1.70378 1.57565 1.93505 1.81604 1.38941 1.84742 1.57463 1.33977 1.17341 1.75581 1.21594 0.90253 0.96604 0.97252 1.18592 0.96231 0.74131 0.96067 1.21879 1.34535 0.92344 1.10168 0.93065 1.25728 0.96717 0.96311 0.99895 1.70013 1.46053 1.00743 1.39538 0.85542 0.78625 0.78333 0.79428 1.19475 1.19403 1.20473 1.22316 0.98652 0.97936 0.88963 0.93436 0.91143 0.91732 0.88693 0.92496 0.90930 0.93267 0.93919 0.89123 0.89358 0.91215 0.91047 0.91957 0.74536 0.91133 0.91034 0.90670 0.95321 0.96591 0.92367 0.90190 0.93505 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.44 8.47 71.98 0.61 -1.83 16 2 C 0.08 1.20 3.10 44.91 0.14 1.34 16 3 C -0.15 -2.58 8.69 71.98 0.63 -1.95 16 4 N -0.54 -9.73 4.71 -871.12 -4.10 -13.83 16 5 C 0.05 0.77 4.77 86.33 0.41 1.19 16 6 C -0.11 -1.83 6.09 30.65 0.19 -1.65 16 7 C -0.14 -3.03 5.61 30.67 0.17 -2.86 16 8 C 0.16 3.85 2.84 45.04 0.13 3.97 16 9 H 0.08 2.21 6.61 -2.39 -0.02 2.20 16 10 N -1.12 -32.79 5.53 -169.17 -0.94 -33.72 16 11 S 2.80 111.93 6.01 -56.49 -0.34 111.59 16 12 O -1.01 -49.91 17.11 -128.00 -2.19 -52.10 16 13 O -1.00 -41.27 16.05 -128.00 -2.05 -43.33 16 14 N -1.00 -41.92 3.23 -543.21 -1.75 -43.67 16 15 C 0.09 3.01 10.10 127.77 1.29 4.30 16 16 C 0.27 14.02 5.08 85.63 0.43 14.46 16 17 C -0.55 -31.59 9.38 25.60 0.24 -31.35 16 18 H 0.05 2.96 7.81 -2.91 -0.02 2.94 16 19 C 0.01 0.74 5.46 84.65 0.46 1.20 16 20 N -0.92 -54.44 13.29 21.45 0.28 -54.16 16 21 Si 0.96 45.06 29.54 68.60 2.03 47.09 16 22 H -0.27 -12.56 7.11 99.48 0.71 -11.85 16 23 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 24 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 25 C 0.05 1.08 4.20 86.32 0.36 1.44 16 26 H 0.05 0.73 6.75 -2.39 -0.02 0.72 16 27 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.06 0.78 6.48 -2.38 -0.02 0.76 16 29 H 0.10 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.01 8.14 -2.39 -0.02 0.99 16 32 H 0.05 0.95 6.19 -2.39 -0.01 0.93 16 33 H 0.04 0.60 6.59 -2.39 -0.02 0.59 16 34 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 35 H 0.09 1.15 8.14 -2.38 -0.02 1.13 16 36 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 37 H 0.07 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.06 1.60 7.69 -2.39 -0.02 1.58 16 39 H 0.42 10.85 8.84 -96.75 -0.85 9.99 16 40 H 0.07 1.96 7.41 -2.39 -0.02 1.94 16 41 H 0.07 2.51 8.07 -2.39 -0.02 2.49 16 42 H 0.07 2.41 7.02 -2.39 -0.02 2.39 16 43 H 0.03 1.49 8.11 -2.39 -0.02 1.47 16 44 H 0.02 0.88 7.61 -2.39 -0.02 0.86 16 45 H 0.27 14.75 8.31 -92.70 -0.77 13.98 16 46 H 0.08 1.89 5.84 -2.39 -0.01 1.87 16 47 H 0.05 0.93 6.81 -2.39 -0.02 0.91 16 Total: -1.00 -70.81 371.82 -3.90 -74.71 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.10 Total: 19.16 kcal Atomic # 6 Polarization: -16.81 SS G_CDS: 5.06 Total: -11.74 kcal Atomic # 7 Polarization: -138.87 SS G_CDS: -6.51 Total: -145.38 kcal Atomic # 8 Polarization: -91.19 SS G_CDS: -4.24 Total: -95.43 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Atomic # 16 Polarization: 111.93 SS G_CDS: -0.34 Total: 111.59 kcal Total: -70.81 -3.90 -74.71 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000408320326.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.976 kcal (2) G-P(sol) polarization free energy of solvation -70.810 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.689 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds