Wall clock time and date at job start Fri Apr 10 2020 18:18:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 N 1.46496 * 109.47171 * 119.99906 * 2 1 3 5 5 S 1.65601 * 119.99907 * 95.00050 * 4 2 1 6 6 O 1.42105 * 106.40354 * 311.46091 * 5 4 2 7 7 O 1.42096 * 106.40280 * 178.53984 * 5 4 2 8 8 N 1.65606 * 107.21838 * 64.99703 * 5 4 2 9 9 C 1.47072 * 120.87761 * 90.00166 * 8 5 4 10 10 C 1.53235 * 108.52128 * 128.83577 * 9 8 5 11 11 N 1.46903 * 109.36354 * 53.81613 * 10 9 8 12 12 C 1.46896 * 111.00399 * 172.75915 * 11 10 9 13 13 H 1.08999 * 109.47581 * 178.18017 * 12 11 10 14 14 C 1.53004 * 109.46914 * 58.17806 * 12 11 10 15 15 C 1.53001 * 109.47012 * 298.18172 * 12 11 10 16 16 C 1.50703 * 109.46870 * 295.62480 * 15 12 11 17 17 H 1.08000 * 120.00101 * 4.87129 * 16 15 12 18 18 C 1.37884 * 119.99728 * 184.86763 * 16 15 12 19 19 N 1.31512 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99710 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47342 * 60.00528 * 20 18 16 22 22 H 1.48503 * 109.47138 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47449 * 300.00241 * 20 18 16 24 24 C 1.46896 * 111.26740 * 296.93922 * 11 10 9 25 25 C 1.47072 * 120.87965 * 270.02258 * 8 5 4 26 26 H 1.09004 * 109.47500 * 59.99613 * 1 2 3 27 27 H 1.08998 * 109.47494 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47186 * 300.00043 * 1 2 3 29 29 H 1.08994 * 109.46724 * 240.00012 * 2 1 3 30 30 H 1.09005 * 109.46910 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47308 * 299.99722 * 3 2 1 32 32 H 1.08995 * 109.47080 * 59.99942 * 3 2 1 33 33 H 0.96992 * 120.00032 * 275.00095 * 4 2 1 34 34 H 1.09006 * 109.63262 * 9.13138 * 9 8 5 35 35 H 1.09003 * 109.63100 * 248.54425 * 9 8 5 36 36 H 1.09007 * 109.49479 * 173.78723 * 10 9 8 37 37 H 1.09002 * 109.49988 * 293.84014 * 10 9 8 38 38 H 1.09000 * 109.47100 * 60.00560 * 14 12 11 39 39 H 1.09008 * 109.46757 * 180.02562 * 14 12 11 40 40 H 1.08994 * 109.47187 * 299.99721 * 14 12 11 41 41 H 1.08996 * 109.47395 * 55.62678 * 15 12 11 42 42 H 1.09002 * 109.46903 * 175.62699 * 15 12 11 43 43 H 0.96995 * 120.00123 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.47087 * 303.09902 * 24 11 10 45 45 H 1.09003 * 109.51312 * 183.04737 * 24 11 10 46 46 H 1.09000 * 109.63373 * 350.87293 * 25 8 5 47 47 H 1.09006 * 109.62962 * 111.45594 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4122 -2.2973 1.1218 6 8 1.3246 -2.9478 0.4787 7 8 2.8776 -2.6567 2.4154 8 7 3.7097 -2.4373 0.1023 9 6 5.0854 -2.3542 0.6156 10 6 5.8698 -3.5672 0.1045 11 7 5.7561 -3.6397 -1.3583 12 6 6.6319 -4.6855 -1.9034 13 1 6.5041 -4.7395 -2.9845 14 6 6.2664 -6.0335 -1.2786 15 6 8.0890 -4.3510 -1.5781 16 6 8.4811 -3.0773 -2.2818 17 1 7.7422 -2.5164 -2.8348 18 6 9.7832 -2.6280 -2.2194 19 7 10.6830 -3.3112 -1.5463 20 14 10.2693 -1.0496 -3.0921 21 1 9.4734 0.0810 -2.5503 22 1 11.7146 -0.7878 -2.8732 23 1 10.0066 -1.1873 -4.5472 24 6 4.3630 -3.8492 -1.7747 25 6 3.5168 -2.6476 -1.3405 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 2.1109 -0.2067 2.0316 34 1 5.0706 -2.3606 1.7056 35 1 5.5548 -1.4376 0.2584 36 1 6.9188 -3.4658 0.3831 37 1 5.4624 -4.4765 0.5465 38 1 5.2283 -6.2718 -1.5104 39 1 6.9167 -6.8095 -1.6828 40 1 6.3943 -5.9795 -0.1976 41 1 8.2004 -4.2205 -0.5018 42 1 8.7322 -5.1644 -1.9140 43 1 11.5991 -2.9953 -1.5027 44 1 3.9762 -4.7545 -1.3069 45 1 4.3187 -3.9525 -2.8589 46 1 2.4648 -2.8480 -1.5440 47 1 3.8354 -1.7592 -1.8859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000411686330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:50 Heat of formation + Delta-G solvation = -75.525573 kcal Electronic energy + Delta-G solvation = -26917.730814 eV Core-core repulsion = 23262.128189 eV Total energy + Delta-G solvation = -3655.602625 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -38.96466 -37.50104 -36.86627 -35.87572 -35.51378 -32.68068 -30.97310 -30.74953 -30.35360 -27.44409 -27.34308 -25.65436 -23.70369 -22.98877 -21.73499 -20.91584 -19.73554 -18.93989 -17.57736 -17.44500 -16.47283 -16.16297 -15.42103 -15.24310 -14.68144 -14.62742 -14.45794 -14.39226 -14.11631 -13.73394 -13.38556 -13.18921 -13.07529 -12.55145 -12.50169 -12.33682 -12.12688 -12.11607 -11.86179 -11.78225 -11.70914 -11.68918 -11.53396 -11.28495 -11.17179 -11.10372 -10.79988 -10.64369 -10.42532 -10.35435 -9.90654 -9.80033 -9.27451 -9.03029 -8.94599 -8.28146 -7.51968 -5.91282 -3.89526 0.54137 2.79469 3.37908 3.42535 3.45097 3.47815 4.28486 4.45246 4.47532 4.53965 4.71626 4.78767 4.89249 5.12030 5.29513 5.32509 5.37570 5.45618 5.50715 5.53044 5.53824 5.58655 5.67846 5.76896 5.79814 5.87561 5.93195 5.97724 6.01171 6.02646 6.05949 6.21139 6.33446 6.34278 6.48931 6.61124 6.72371 6.86656 6.94226 7.50916 7.64288 7.85906 7.97618 8.09990 8.55555 9.17213 9.72507 11.20584 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.003978 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.495002 B = 7037.211243 C = 7957.893063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.148 3.852 3 C -0.158 4.158 4 N -1.125 6.125 5 S 2.784 3.216 6 O -0.980 6.980 7 O -0.981 6.981 8 N -1.004 6.004 9 C 0.125 3.875 10 C 0.044 3.956 11 N -0.508 5.508 12 C 0.087 3.913 13 H 0.072 0.928 14 C -0.185 4.185 15 C 0.029 3.971 16 C -0.492 4.492 17 H 0.062 0.938 18 C 0.051 3.949 19 N -0.904 5.904 20 Si 0.891 3.109 21 H -0.279 1.279 22 H -0.291 1.291 23 H -0.280 1.280 24 C 0.041 3.959 25 C 0.124 3.876 26 H 0.066 0.934 27 H 0.069 0.931 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.065 0.935 31 H 0.069 0.931 32 H 0.060 0.940 33 H 0.414 0.586 34 H 0.088 0.912 35 H 0.079 0.921 36 H 0.103 0.897 37 H 0.029 0.971 38 H 0.040 0.960 39 H 0.056 0.944 40 H 0.052 0.948 41 H 0.016 0.984 42 H 0.022 0.978 43 H 0.258 0.742 44 H 0.032 0.968 45 H 0.081 0.919 46 H 0.087 0.913 47 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.742 6.180 3.353 20.017 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.041 3.959 3 C -0.217 4.217 4 N -0.885 5.885 5 S 2.793 3.207 6 O -0.963 6.963 7 O -0.965 6.965 8 N -0.846 5.846 9 C 0.000 4.000 10 C -0.085 4.085 11 N -0.232 5.232 12 C -0.021 4.021 13 H 0.090 0.910 14 C -0.244 4.244 15 C -0.008 4.008 16 C -0.531 4.531 17 H 0.080 0.920 18 C -0.148 4.148 19 N -0.544 5.544 20 Si 0.719 3.281 21 H -0.205 1.205 22 H -0.217 1.217 23 H -0.205 1.205 24 C -0.089 4.089 25 C -0.002 4.002 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.078 0.922 29 H 0.101 0.899 30 H 0.084 0.916 31 H 0.088 0.912 32 H 0.079 0.921 33 H 0.247 0.753 34 H 0.106 0.894 35 H 0.097 0.903 36 H 0.121 0.879 37 H 0.047 0.953 38 H 0.059 0.941 39 H 0.075 0.925 40 H 0.071 0.929 41 H 0.035 0.965 42 H 0.040 0.960 43 H 0.068 0.932 44 H 0.050 0.950 45 H 0.099 0.901 46 H 0.105 0.895 47 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -18.880 5.833 3.491 20.066 hybrid contribution 0.394 0.625 0.028 0.739 sum -18.486 6.458 3.519 19.895 Atomic orbital electron populations 1.22342 0.95154 1.03385 1.02271 1.20692 0.94320 0.94309 0.86581 1.22092 1.02131 0.94883 1.02605 1.56169 1.82037 1.31678 1.18621 1.01871 0.73017 0.73029 0.72801 1.93589 1.52461 1.73235 1.76992 1.93607 1.81629 1.81932 1.39307 1.58003 1.20142 1.87428 1.18998 1.21629 0.79704 1.00331 0.98298 1.22431 1.01779 0.95529 0.88806 1.62003 1.04584 1.47451 1.09167 1.21945 0.96106 0.86028 0.98015 0.91005 1.22536 1.00044 1.00318 1.01512 1.19231 0.87526 0.97096 0.96958 1.21148 0.93842 1.07286 1.30825 0.92017 1.25014 0.96857 0.97069 0.95896 1.69948 1.02790 1.39154 1.42523 0.86692 0.77032 0.84256 0.80097 1.20460 1.21722 1.20545 1.22379 0.90202 0.95706 1.00578 1.21597 0.99841 0.99464 0.79300 0.91535 0.91207 0.92239 0.89904 0.91596 0.91250 0.92104 0.75298 0.89409 0.90309 0.87867 0.95262 0.94090 0.92479 0.92942 0.96542 0.95953 0.93235 0.95017 0.90059 0.89474 0.90644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.35 9.52 37.16 0.35 -0.99 16 2 C 0.15 1.22 3.41 -67.93 -0.23 0.99 16 3 C -0.16 -1.07 9.44 37.16 0.35 -0.72 16 4 N -1.13 -10.50 5.53 -4.89 -0.03 -10.53 16 5 S 2.78 35.82 6.10 -107.50 -0.66 35.17 16 6 O -0.98 -14.62 16.01 -57.17 -0.92 -15.53 16 7 O -0.98 -15.46 16.75 -57.17 -0.96 -16.41 16 8 N -1.00 -13.14 3.39 -113.24 -0.38 -13.53 16 9 C 0.13 1.81 6.66 -3.61 -0.02 1.79 16 10 C 0.04 0.75 4.75 -3.70 -0.02 0.74 16 11 N -0.51 -9.03 4.29 -226.34 -0.97 -10.00 16 12 C 0.09 1.69 2.29 -67.71 -0.16 1.54 16 13 H 0.07 1.42 8.05 -51.93 -0.42 1.00 16 14 C -0.19 -3.15 8.50 37.16 0.32 -2.84 16 15 C 0.03 0.70 4.28 -27.88 -0.12 0.58 16 16 C -0.49 -13.22 8.83 -34.44 -0.30 -13.52 16 17 H 0.06 1.65 7.73 -52.49 -0.41 1.24 16 18 C 0.05 1.43 5.46 -17.82 -0.10 1.33 16 19 N -0.90 -26.57 13.29 55.43 0.74 -25.83 16 20 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 21 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 22 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 C 0.04 0.61 5.17 -3.70 -0.02 0.59 16 25 C 0.12 1.55 5.88 -3.61 -0.02 1.53 16 26 H 0.07 0.42 8.14 -51.93 -0.42 -0.01 16 27 H 0.07 0.67 7.64 -51.93 -0.40 0.27 16 28 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 29 H 0.08 0.68 7.18 -51.93 -0.37 0.31 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.41 3.16 8.84 -34.47 -0.30 2.85 16 34 H 0.09 1.19 6.93 -51.93 -0.36 0.83 16 35 H 0.08 1.13 8.14 -51.93 -0.42 0.71 16 36 H 0.10 1.99 5.93 -51.93 -0.31 1.68 16 37 H 0.03 0.49 6.70 -51.93 -0.35 0.15 16 38 H 0.04 0.63 6.72 -51.93 -0.35 0.28 16 39 H 0.06 0.95 8.14 -51.92 -0.42 0.53 16 40 H 0.05 0.90 6.54 -51.93 -0.34 0.56 16 41 H 0.02 0.42 6.09 -51.93 -0.32 0.11 16 42 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 44 H 0.03 0.47 6.84 -51.93 -0.35 0.12 16 45 H 0.08 1.11 8.04 -51.93 -0.42 0.69 16 46 H 0.09 0.97 6.93 -51.93 -0.36 0.61 16 47 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -32.70 372.11 -10.55 -43.25 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -7.99 Total: 0.41 kcal Atomic # 6 Polarization: -9.02 SS G_CDS: 0.03 Total: -8.99 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.64 Total: -59.89 kcal Atomic # 8 Polarization: -30.07 SS G_CDS: -1.87 Total: -31.95 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Atomic # 16 Polarization: 35.82 SS G_CDS: -0.66 Total: 35.17 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.70 -10.55 -43.25 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411686330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.279 kcal (2) G-P(sol) polarization free energy of solvation -32.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.545 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds