Wall clock time and date at job start Fri Apr 10 2020 18:18:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.47013 * 2 1 4 4 N 1.46496 * 109.47171 * 119.99906 * 2 1 3 5 5 S 1.65601 * 119.99907 * 95.00050 * 4 2 1 6 6 O 1.42105 * 106.40354 * 311.46091 * 5 4 2 7 7 O 1.42096 * 106.40280 * 178.53984 * 5 4 2 8 8 N 1.65606 * 107.21838 * 64.99703 * 5 4 2 9 9 C 1.47072 * 120.87761 * 90.00166 * 8 5 4 10 10 C 1.53235 * 108.52128 * 128.83577 * 9 8 5 11 11 N 1.46903 * 109.36354 * 53.81613 * 10 9 8 12 12 C 1.46896 * 111.00399 * 172.75915 * 11 10 9 13 13 H 1.08999 * 109.47581 * 178.18017 * 12 11 10 14 14 C 1.53004 * 109.46914 * 58.17806 * 12 11 10 15 15 C 1.53001 * 109.47012 * 298.18172 * 12 11 10 16 16 C 1.50703 * 109.46870 * 295.62480 * 15 12 11 17 17 H 1.08000 * 120.00101 * 4.87129 * 16 15 12 18 18 C 1.37884 * 119.99728 * 184.86763 * 16 15 12 19 19 N 1.31512 * 120.00025 * 0.02562 * 18 16 15 20 20 Si 1.86795 * 119.99710 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47342 * 60.00528 * 20 18 16 22 22 H 1.48503 * 109.47138 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47449 * 300.00241 * 20 18 16 24 24 C 1.46896 * 111.26740 * 296.93922 * 11 10 9 25 25 C 1.47072 * 120.87965 * 270.02258 * 8 5 4 26 26 H 1.09004 * 109.47500 * 59.99613 * 1 2 3 27 27 H 1.08998 * 109.47494 * 179.97438 * 1 2 3 28 28 H 1.09005 * 109.47186 * 300.00043 * 1 2 3 29 29 H 1.08994 * 109.46724 * 240.00012 * 2 1 3 30 30 H 1.09005 * 109.46910 * 180.02562 * 3 2 1 31 31 H 1.09003 * 109.47308 * 299.99722 * 3 2 1 32 32 H 1.08995 * 109.47080 * 59.99942 * 3 2 1 33 33 H 0.96992 * 120.00032 * 275.00095 * 4 2 1 34 34 H 1.09006 * 109.63262 * 9.13138 * 9 8 5 35 35 H 1.09003 * 109.63100 * 248.54425 * 9 8 5 36 36 H 1.09007 * 109.49479 * 173.78723 * 10 9 8 37 37 H 1.09002 * 109.49988 * 293.84014 * 10 9 8 38 38 H 1.09000 * 109.47100 * 60.00560 * 14 12 11 39 39 H 1.09008 * 109.46757 * 180.02562 * 14 12 11 40 40 H 1.08994 * 109.47187 * 299.99721 * 14 12 11 41 41 H 1.08996 * 109.47395 * 55.62678 * 15 12 11 42 42 H 1.09002 * 109.46903 * 175.62699 * 15 12 11 43 43 H 0.96995 * 120.00123 * 179.97438 * 19 18 16 44 44 H 1.08997 * 109.47087 * 303.09902 * 24 11 10 45 45 H 1.09003 * 109.51312 * 183.04737 * 24 11 10 46 46 H 1.09000 * 109.63373 * 350.87293 * 25 8 5 47 47 H 1.09006 * 109.62962 * 111.45594 * 25 8 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1961 5 16 2.4122 -2.2973 1.1218 6 8 1.3246 -2.9478 0.4787 7 8 2.8776 -2.6567 2.4154 8 7 3.7097 -2.4373 0.1023 9 6 5.0854 -2.3542 0.6156 10 6 5.8698 -3.5672 0.1045 11 7 5.7561 -3.6397 -1.3583 12 6 6.6319 -4.6855 -1.9034 13 1 6.5041 -4.7395 -2.9845 14 6 6.2664 -6.0335 -1.2786 15 6 8.0890 -4.3510 -1.5781 16 6 8.4811 -3.0773 -2.2818 17 1 7.7422 -2.5164 -2.8348 18 6 9.7832 -2.6280 -2.2194 19 7 10.6830 -3.3112 -1.5463 20 14 10.2693 -1.0496 -3.0921 21 1 9.4734 0.0810 -2.5503 22 1 11.7146 -0.7878 -2.8732 23 1 10.0066 -1.1873 -4.5472 24 6 4.3630 -3.8492 -1.7747 25 6 3.5168 -2.6476 -1.3405 26 1 -0.3634 0.5139 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 -0.3634 0.5139 0.8900 29 1 1.8932 -0.5138 -0.8900 30 1 3.1300 1.4425 -0.0005 31 1 1.6767 1.9564 -0.8900 32 1 1.6766 1.9563 0.8899 33 1 2.1109 -0.2067 2.0316 34 1 5.0706 -2.3606 1.7056 35 1 5.5548 -1.4376 0.2584 36 1 6.9188 -3.4658 0.3831 37 1 5.4624 -4.4765 0.5465 38 1 5.2283 -6.2718 -1.5104 39 1 6.9167 -6.8095 -1.6828 40 1 6.3943 -5.9795 -0.1976 41 1 8.2004 -4.2205 -0.5018 42 1 8.7322 -5.1644 -1.9140 43 1 11.5991 -2.9953 -1.5027 44 1 3.9762 -4.7545 -1.3069 45 1 4.3187 -3.9525 -2.8589 46 1 2.4648 -2.8480 -1.5440 47 1 3.8354 -1.7592 -1.8859 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000411686330.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:49 Heat of formation + Delta-G solvation = -100.188155 kcal Electronic energy + Delta-G solvation = -26918.800264 eV Core-core repulsion = 23262.128189 eV Total energy + Delta-G solvation = -3656.672075 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.28661 -38.53003 -37.64510 -37.01086 -36.86621 -34.66258 -32.24065 -31.81946 -31.46340 -29.18012 -27.98828 -26.92376 -25.20005 -24.62432 -22.42581 -22.20819 -20.88280 -20.17723 -18.65452 -18.54875 -18.27416 -17.37240 -16.65601 -16.55804 -16.28433 -15.79234 -15.64363 -15.41305 -15.22538 -14.83376 -14.61431 -14.28111 -14.05491 -13.84821 -13.72065 -13.56580 -13.49598 -13.25545 -13.08681 -13.01124 -12.90435 -12.85384 -12.59321 -12.50652 -12.41300 -12.33050 -12.29104 -11.94667 -11.86695 -11.79550 -11.53108 -11.06174 -10.98166 -10.56396 -10.42280 -10.11933 -8.91415 -8.05037 -6.09780 -0.47892 1.46658 1.48494 1.55913 1.82524 2.50605 2.51662 3.09281 3.27016 3.31527 3.65368 3.86095 4.10419 4.16733 4.19560 4.26759 4.31144 4.33077 4.39974 4.44567 4.49914 4.57669 4.59507 4.78696 4.81805 4.83498 4.93044 4.99385 5.01000 5.02543 5.09593 5.12850 5.21208 5.28208 5.29244 5.39097 5.43701 5.53173 5.56246 5.75300 5.94659 6.12992 6.33483 6.42726 6.54396 7.04966 7.56449 9.06886 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015784 B = 0.003978 C = 0.003518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.495002 B = 7037.211243 C = 7957.893063 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.140 3.860 3 C -0.154 4.154 4 N -1.113 6.113 5 S 2.802 3.198 6 O -0.999 6.999 7 O -1.012 7.012 8 N -1.004 6.004 9 C 0.134 3.866 10 C 0.045 3.955 11 N -0.520 5.520 12 C 0.095 3.905 13 H 0.071 0.929 14 C -0.176 4.176 15 C 0.035 3.965 16 C -0.496 4.496 17 H 0.064 0.936 18 C -0.004 4.004 19 N -0.942 5.942 20 Si 0.956 3.044 21 H -0.269 1.269 22 H -0.293 1.293 23 H -0.271 1.271 24 C 0.039 3.961 25 C 0.125 3.875 26 H 0.083 0.917 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.084 0.916 30 H 0.058 0.942 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.423 0.577 34 H 0.095 0.905 35 H 0.081 0.919 36 H 0.073 0.927 37 H 0.029 0.971 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.046 0.954 41 H -0.003 1.003 42 H -0.009 1.009 43 H 0.257 0.743 44 H 0.031 0.969 45 H 0.094 0.906 46 H 0.105 0.895 47 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.671 8.001 2.475 22.304 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.033 3.967 3 C -0.213 4.213 4 N -0.877 5.877 5 S 2.810 3.190 6 O -0.982 6.982 7 O -0.996 6.996 8 N -0.845 5.845 9 C 0.008 3.992 10 C -0.084 4.084 11 N -0.244 5.244 12 C -0.013 4.013 13 H 0.089 0.911 14 C -0.235 4.235 15 C -0.002 4.002 16 C -0.535 4.535 17 H 0.082 0.918 18 C -0.200 4.200 19 N -0.585 5.585 20 Si 0.783 3.217 21 H -0.194 1.194 22 H -0.219 1.219 23 H -0.196 1.196 24 C -0.091 4.091 25 C 0.000 4.000 26 H 0.102 0.898 27 H 0.068 0.932 28 H 0.085 0.915 29 H 0.103 0.897 30 H 0.077 0.923 31 H 0.101 0.899 32 H 0.088 0.912 33 H 0.259 0.741 34 H 0.113 0.887 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.047 0.953 38 H 0.082 0.918 39 H 0.075 0.925 40 H 0.065 0.935 41 H 0.015 0.985 42 H 0.009 0.991 43 H 0.066 0.934 44 H 0.049 0.951 45 H 0.113 0.887 46 H 0.123 0.877 47 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -20.836 7.656 2.610 22.351 hybrid contribution 0.946 0.055 0.304 0.995 sum -19.890 7.711 2.913 21.530 Atomic orbital electron populations 1.22343 0.94724 1.02478 1.03585 1.20929 0.94712 0.95125 0.85894 1.22067 1.01664 0.93829 1.03745 1.55867 1.81576 1.30475 1.19733 1.01185 0.72452 0.73547 0.71775 1.93564 1.53028 1.74372 1.77236 1.93562 1.82069 1.83000 1.40939 1.57934 1.19446 1.87754 1.19335 1.21469 0.80097 0.98949 0.98674 1.22354 1.00488 0.96877 0.88725 1.61925 1.06272 1.46855 1.09356 1.21649 0.93627 0.87865 0.98196 0.91083 1.22411 1.01348 0.98850 1.00862 1.19080 0.90495 0.95294 0.95333 1.21475 0.93883 1.07865 1.30252 0.91789 1.25847 0.97033 1.00391 0.96761 1.70093 1.03052 1.41038 1.44271 0.85633 0.76486 0.80420 0.79196 1.19393 1.21898 1.19649 1.22510 0.88334 0.96788 1.01462 1.21693 1.00443 0.99028 0.78884 0.89773 0.93154 0.91495 0.89744 0.92258 0.89889 0.91243 0.74120 0.88711 0.90078 0.90870 0.95336 0.91840 0.92484 0.93533 0.98478 0.99054 0.93413 0.95101 0.88727 0.87667 0.89386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.27 9.52 71.98 0.69 -1.59 16 2 C 0.14 1.94 3.41 44.99 0.15 2.09 16 3 C -0.15 -1.63 9.44 71.98 0.68 -0.95 16 4 N -1.11 -18.55 5.53 -169.40 -0.94 -19.48 16 5 S 2.80 67.99 6.10 -56.49 -0.34 67.65 16 6 O -1.00 -28.23 16.01 -128.00 -2.05 -30.28 16 7 O -1.01 -31.00 16.75 -128.00 -2.14 -33.15 16 8 N -1.00 -24.62 3.39 -512.19 -1.73 -26.35 16 9 C 0.13 3.75 6.66 86.35 0.58 4.33 16 10 C 0.05 1.55 4.75 86.38 0.41 1.96 16 11 N -0.52 -18.12 4.29 -870.01 -3.73 -21.85 16 12 C 0.09 3.70 2.29 44.92 0.10 3.80 16 13 H 0.07 2.77 8.05 -2.39 -0.02 2.75 16 14 C -0.18 -5.92 8.50 71.98 0.61 -5.31 16 15 C 0.04 1.76 4.28 29.85 0.13 1.89 16 16 C -0.50 -26.91 8.83 25.60 0.23 -26.69 16 17 H 0.06 3.38 7.73 -2.91 -0.02 3.36 16 18 C 0.00 -0.25 5.46 84.66 0.46 0.21 16 19 N -0.94 -56.73 13.29 21.45 0.28 -56.44 16 20 Si 0.96 43.92 29.54 68.60 2.03 45.94 16 21 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 22 H -0.29 -13.44 7.11 99.48 0.71 -12.74 16 23 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 24 C 0.04 1.05 5.17 86.38 0.45 1.50 16 25 C 0.12 2.83 5.88 86.35 0.51 3.33 16 26 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 27 H 0.05 0.87 7.64 -2.39 -0.02 0.86 16 28 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 29 H 0.08 1.15 7.18 -2.39 -0.02 1.14 16 30 H 0.06 0.72 8.14 -2.38 -0.02 0.70 16 31 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.42 5.60 8.84 -96.75 -0.85 4.74 16 34 H 0.09 2.52 6.93 -2.38 -0.02 2.50 16 35 H 0.08 2.24 8.14 -2.39 -0.02 2.22 16 36 H 0.07 2.94 5.93 -2.38 -0.01 2.93 16 37 H 0.03 0.97 6.70 -2.39 -0.02 0.95 16 38 H 0.06 1.85 6.72 -2.39 -0.02 1.83 16 39 H 0.06 1.89 8.14 -2.38 -0.02 1.87 16 40 H 0.05 1.60 6.54 -2.39 -0.02 1.59 16 41 H 0.00 -0.16 6.09 -2.39 -0.01 -0.17 16 42 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 43 H 0.26 14.80 8.31 -92.71 -0.77 14.03 16 44 H 0.03 0.86 6.84 -2.39 -0.02 0.84 16 45 H 0.09 2.34 8.04 -2.39 -0.02 2.32 16 46 H 0.11 2.05 6.93 -2.39 -0.02 2.03 16 47 H 0.09 1.81 8.14 -2.38 -0.02 1.79 16 Total: -1.00 -70.42 372.11 -3.54 -73.96 By element: Atomic # 1 Polarization: 15.31 SS G_CDS: 0.10 Total: 15.41 kcal Atomic # 6 Polarization: -20.39 SS G_CDS: 4.99 Total: -15.41 kcal Atomic # 7 Polarization: -118.01 SS G_CDS: -6.12 Total: -124.13 kcal Atomic # 8 Polarization: -59.23 SS G_CDS: -4.19 Total: -63.43 kcal Atomic # 14 Polarization: 43.92 SS G_CDS: 2.03 Total: 45.94 kcal Atomic # 16 Polarization: 67.99 SS G_CDS: -0.34 Total: 67.65 kcal Total: -70.42 -3.54 -73.96 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000411686330.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.228 kcal (2) G-P(sol) polarization free energy of solvation -70.419 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.961 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds