Wall clock time and date at job start Fri Apr 10 2020 18:18:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 H 1.09000 * 109.46402 * 2 1 4 4 C 1.50699 * 109.47044 * 120.00211 * 2 1 3 5 5 H 1.07992 * 119.99978 * 120.00350 * 4 2 1 6 6 C 1.37876 * 119.99781 * 299.99667 * 4 2 1 7 7 N 1.31514 * 119.99924 * 0.02562 * 6 4 2 8 8 Si 1.86800 * 120.00053 * 180.02562 * 6 4 2 9 9 H 1.48502 * 109.46972 * 60.00398 * 8 6 4 10 10 H 1.48499 * 109.47464 * 180.02562 * 8 6 4 11 11 H 1.48501 * 109.46986 * 300.00599 * 8 6 4 12 12 N 1.46502 * 109.47134 * 240.00097 * 2 1 3 13 13 C 1.46499 * 120.00062 * 300.00045 * 12 2 1 14 14 S 1.65606 * 119.99935 * 119.99548 * 12 2 1 15 15 O 1.42098 * 106.40010 * 23.54321 * 14 12 2 16 16 O 1.42094 * 106.39890 * 156.45686 * 14 12 2 17 17 N 1.65596 * 107.21969 * 270.00204 * 14 12 2 18 18 C 1.46502 * 119.99713 * 269.99848 * 17 14 12 19 19 C 1.46495 * 120.00156 * 89.99975 * 17 14 12 20 20 C 1.53006 * 109.47011 * 94.99900 * 19 17 14 21 21 H 1.08992 * 110.33148 * 64.30259 * 20 19 17 22 22 C 1.54909 * 110.37196 * 186.55362 * 20 19 17 23 23 C 1.55263 * 101.59557 * 155.81337 * 22 20 19 24 24 C 1.54313 * 103.08803 * 324.48841 * 23 22 20 25 25 N 1.47439 * 107.23482 * 22.20666 * 24 23 22 26 26 C 1.46901 * 111.00378 * 123.25617 * 25 24 23 27 27 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.46982 * 299.99790 * 1 2 3 29 29 H 1.09002 * 109.47164 * 60.00347 * 1 2 3 30 30 H 0.97005 * 119.99751 * 180.02562 * 7 6 4 31 31 H 1.09002 * 109.47391 * 89.99876 * 13 12 2 32 32 H 1.09001 * 109.46813 * 329.99933 * 13 12 2 33 33 H 1.09004 * 109.47041 * 210.00060 * 13 12 2 34 34 H 1.08998 * 109.47106 * 90.00485 * 18 17 14 35 35 H 1.09002 * 109.46786 * 210.00192 * 18 17 14 36 36 H 1.09002 * 109.47162 * 330.00305 * 18 17 14 37 37 H 1.09002 * 109.47643 * 214.99649 * 19 17 14 38 38 H 1.09003 * 109.47123 * 335.00395 * 19 17 14 39 39 H 1.09002 * 110.99205 * 273.98930 * 22 20 19 40 40 H 1.09006 * 110.99246 * 37.80770 * 22 20 19 41 41 H 1.09004 * 110.74090 * 206.04432 * 23 22 20 42 42 H 1.09001 * 110.74952 * 82.93799 * 23 22 20 43 43 H 1.08996 * 109.88798 * 262.79814 * 24 23 22 44 44 H 1.09006 * 109.88616 * 141.60649 * 24 23 22 45 45 H 1.08999 * 109.46901 * 299.15671 * 26 25 24 46 46 H 1.08992 * 109.47172 * 59.15690 * 26 25 24 47 47 H 1.09002 * 109.46955 * 179.16130 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 1.2304 5 1 2.6533 -1.5884 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 0.9429 0.8297 2.6033 8 14 2.3225 -1.1195 4.0079 9 1 3.8075 -1.1189 4.0077 10 1 1.8270 -0.4199 5.2204 11 1 1.8281 -2.5198 4.0081 12 7 2.0184 -0.6906 -1.1962 13 6 1.6645 -2.0932 -1.4281 14 16 2.9704 0.1143 -2.2863 15 8 3.5794 1.1830 -1.5749 16 8 3.7119 -0.8787 -2.9814 17 7 1.9607 0.8091 -3.3998 18 6 1.5813 0.0698 -4.6064 19 6 1.4468 2.1630 -3.1784 20 6 2.3413 3.1725 -3.9007 21 1 2.2956 3.0159 -4.9784 22 6 1.9159 4.6195 -3.5476 23 6 3.2301 5.4039 -3.8091 24 6 4.3243 4.4098 -3.3667 25 7 3.7358 3.0590 -3.4227 26 6 4.5219 2.1781 -4.2968 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 0.7089 1.1613 3.4844 31 1 0.7376 -2.1444 -1.9994 32 1 1.5296 -2.5968 -0.4709 33 1 2.4630 -2.5818 -1.9864 34 1 0.6745 -0.5027 -4.4116 35 1 1.4001 0.7716 -5.4205 36 1 2.3871 -0.6094 -4.8848 37 1 0.4310 2.2343 -3.5672 38 1 1.4431 2.3800 -2.1102 39 1 1.1168 4.9630 -4.2045 40 1 1.6188 4.6949 -2.5015 41 1 3.2655 6.3103 -3.2047 42 1 3.3324 5.6439 -4.8674 43 1 4.6398 4.6348 -2.3480 44 1 5.1766 4.4712 -4.0434 45 1 4.5311 2.5841 -5.3083 46 1 5.5434 2.1123 -3.9224 47 1 4.0743 1.1843 -4.3083 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420732235.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:18:57 Heat of formation + Delta-G solvation = -73.443833 kcal Electronic energy + Delta-G solvation = -28012.524331 eV Core-core repulsion = 24357.011977 eV Total energy + Delta-G solvation = -3655.512354 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.23139 -38.15243 -37.81176 -36.76821 -36.59378 -34.49258 -33.01859 -31.18108 -30.86246 -27.70511 -27.22309 -26.90764 -26.49319 -24.88895 -22.48602 -21.96078 -21.08827 -19.65589 -18.84375 -18.56815 -17.95491 -17.15769 -17.04251 -16.57690 -16.43317 -15.65767 -15.12646 -15.02823 -14.89488 -14.77810 -14.43801 -14.36617 -14.11739 -13.69704 -13.63331 -13.41901 -13.26898 -13.13975 -13.05964 -12.96803 -12.71374 -12.67953 -12.56468 -12.52083 -12.37261 -12.20940 -12.11383 -12.04694 -11.92631 -11.89770 -11.79048 -11.52497 -11.15566 -10.48156 -9.96968 -9.59022 -9.00022 -8.09746 -6.22980 -0.17028 1.42526 1.44838 1.51763 2.17869 2.44383 2.73043 3.05114 3.18064 3.55477 3.74916 3.79772 3.99183 4.10407 4.20607 4.27647 4.31161 4.41137 4.41954 4.57322 4.65262 4.69328 4.73175 4.74743 4.80580 4.88367 4.91829 4.95142 4.99441 5.01448 5.03320 5.05082 5.15069 5.17259 5.24522 5.27882 5.42224 5.61637 5.63471 5.86740 5.94118 6.18527 6.20361 6.22674 6.33316 6.83850 7.45259 8.94150 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.015982 B = 0.005087 C = 0.004551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1751.532051 B = 5502.772349 C = 6151.234991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.277 3.723 3 H 0.025 0.975 4 C -0.541 4.541 5 H 0.052 0.948 6 C 0.020 3.980 7 N -0.912 5.912 8 Si 0.952 3.048 9 H -0.280 1.280 10 H -0.279 1.279 11 H -0.266 1.266 12 N -1.006 6.006 13 C 0.093 3.907 14 S 2.784 3.216 15 O -0.974 6.974 16 O -1.021 7.021 17 N -1.003 6.003 18 C 0.081 3.919 19 C 0.139 3.861 20 C 0.052 3.948 21 H 0.075 0.925 22 C -0.120 4.120 23 C -0.130 4.130 24 C 0.039 3.961 25 N -0.543 5.543 26 C 0.019 3.981 27 H 0.037 0.963 28 H 0.066 0.934 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.065 0.935 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.057 0.943 39 H 0.103 0.897 40 H 0.064 0.936 41 H 0.083 0.917 42 H 0.084 0.916 43 H 0.056 0.944 44 H 0.061 0.939 45 H 0.051 0.949 46 H 0.056 0.944 47 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.982 5.423 -17.400 18.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.173 3.827 3 H 0.043 0.957 4 C -0.580 4.580 5 H 0.070 0.930 6 C -0.180 4.180 7 N -0.551 5.551 8 Si 0.778 3.222 9 H -0.206 1.206 10 H -0.204 1.204 11 H -0.191 1.191 12 N -0.847 5.847 13 C -0.053 4.053 14 S 2.793 3.207 15 O -0.958 6.958 16 O -1.005 7.005 17 N -0.844 5.844 18 C -0.064 4.064 19 C 0.013 3.987 20 C -0.058 4.058 21 H 0.093 0.907 22 C -0.159 4.159 23 C -0.169 4.169 24 C -0.088 4.088 25 N -0.268 5.268 26 C -0.130 4.130 27 H 0.056 0.944 28 H 0.085 0.915 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.128 0.872 38 H 0.075 0.925 39 H 0.122 0.878 40 H 0.083 0.917 41 H 0.102 0.898 42 H 0.102 0.898 43 H 0.075 0.925 44 H 0.080 0.920 45 H 0.069 0.931 46 H 0.075 0.925 47 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -1.108 5.331 -16.776 17.637 hybrid contribution 0.224 -0.319 0.512 0.643 sum -0.884 5.012 -16.264 17.042 Atomic orbital electron populations 1.21888 0.97001 0.99905 1.00325 1.18322 0.92036 0.91285 0.81070 0.95731 1.21621 1.31659 1.13004 0.91726 0.92964 1.25605 0.95202 0.95724 1.01506 1.69964 1.37184 1.23576 1.24350 0.85704 0.78426 0.79124 0.78948 1.20626 1.20431 1.19108 1.57808 1.70309 1.20904 1.35645 1.21407 1.00230 0.81330 1.02346 1.01778 0.73946 0.72345 0.72582 1.93631 1.74192 1.55313 1.72626 1.93454 1.70194 1.61809 1.75039 1.57728 1.67573 1.24428 1.34626 1.21709 1.00962 0.97018 0.86665 1.21410 0.97817 0.79151 1.00317 1.23142 0.88505 0.95953 0.98150 0.90707 1.22742 0.98292 0.92288 1.02537 1.22747 0.93653 0.98204 1.02246 1.22833 0.97583 0.87460 1.00953 1.63351 1.02278 1.11142 1.50047 1.22598 0.98152 0.96828 0.95394 0.94375 0.91503 0.94740 0.92627 0.91685 0.91256 0.91500 0.91598 0.88356 0.91488 0.87249 0.92453 0.87824 0.91678 0.89837 0.89787 0.92517 0.92014 0.93075 0.92489 0.93855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.06 8.97 71.98 0.65 -5.41 16 2 C 0.28 14.10 2.62 44.25 0.12 14.22 16 3 H 0.02 1.43 6.91 -2.39 -0.02 1.41 16 4 C -0.54 -30.25 7.99 25.60 0.20 -30.05 16 5 H 0.05 2.93 7.33 -2.91 -0.02 2.91 16 6 C 0.02 1.09 5.30 84.65 0.45 1.54 16 7 N -0.91 -51.96 11.32 21.45 0.24 -51.72 16 8 Si 0.95 44.16 29.54 68.60 2.03 46.19 16 9 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 12 N -1.01 -43.87 3.12 -520.42 -1.62 -45.50 16 13 C 0.09 3.43 9.65 127.77 1.23 4.66 16 14 S 2.78 115.38 4.43 -56.49 -0.25 115.13 16 15 O -0.97 -47.72 13.47 -128.00 -1.72 -49.45 16 16 O -1.02 -44.00 14.82 -128.00 -1.90 -45.90 16 17 N -1.00 -30.38 2.02 -539.11 -1.09 -31.47 16 18 C 0.08 1.79 10.34 127.77 1.32 3.11 16 19 C 0.14 3.83 5.16 86.38 0.45 4.27 16 20 C 0.05 1.27 2.80 45.39 0.13 1.40 16 21 H 0.08 1.50 7.77 -2.39 -0.02 1.48 16 22 C -0.12 -2.39 6.51 32.02 0.21 -2.18 16 23 C -0.13 -2.42 6.94 31.82 0.22 -2.20 16 24 C 0.04 1.01 6.90 86.65 0.60 1.60 16 25 N -0.54 -16.74 3.09 -886.65 -2.74 -19.48 16 26 C 0.02 0.56 8.25 127.69 1.05 1.61 16 27 H 0.04 1.65 7.67 -2.39 -0.02 1.63 16 28 H 0.07 3.43 6.07 -2.39 -0.01 3.41 16 29 H 0.03 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 31 H 0.06 1.97 8.14 -2.39 -0.02 1.95 16 32 H 0.07 2.71 7.02 -2.39 -0.02 2.69 16 33 H 0.07 2.35 7.02 -2.38 -0.02 2.33 16 34 H 0.07 1.26 8.14 -2.39 -0.02 1.24 16 35 H 0.10 1.52 8.07 -2.39 -0.02 1.50 16 36 H 0.07 1.61 7.02 -2.39 -0.02 1.60 16 37 H 0.11 2.21 8.11 -2.39 -0.02 2.19 16 38 H 0.06 2.00 7.56 -2.39 -0.02 1.98 16 39 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 40 H 0.06 1.54 8.02 -2.38 -0.02 1.52 16 41 H 0.08 1.41 8.14 -2.38 -0.02 1.39 16 42 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 43 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 44 H 0.06 1.38 7.58 -2.38 -0.02 1.36 16 45 H 0.05 1.17 8.09 -2.39 -0.02 1.15 16 46 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 47 H 0.04 1.38 4.68 -2.39 -0.01 1.36 16 Total: -1.00 -71.41 366.94 0.49 -70.92 By element: Atomic # 1 Polarization: 17.77 SS G_CDS: 0.93 Total: 18.70 kcal Atomic # 6 Polarization: -14.05 SS G_CDS: 6.62 Total: -7.43 kcal Atomic # 7 Polarization: -142.95 SS G_CDS: -5.21 Total: -148.16 kcal Atomic # 8 Polarization: -91.72 SS G_CDS: -3.62 Total: -95.34 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.19 kcal Atomic # 16 Polarization: 115.38 SS G_CDS: -0.25 Total: 115.13 kcal Total: -71.41 0.49 -70.92 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420732235.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.527 kcal (2) G-P(sol) polarization free energy of solvation -71.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.494 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.444 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds