Wall clock time and date at job start Fri Apr 10 2020 18:19:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47177 * 2 1 4 4 C 1.50704 * 109.47326 * 239.99858 * 2 1 3 5 5 H 1.07996 * 120.00173 * 245.43703 * 4 2 1 6 6 C 1.37877 * 119.99753 * 65.43777 * 4 2 1 7 7 N 1.31512 * 119.99893 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99843 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46932 * 90.00696 * 8 6 4 10 10 H 1.48504 * 109.47196 * 209.99969 * 8 6 4 11 11 H 1.48494 * 109.47346 * 330.00489 * 8 6 4 12 12 N 1.46506 * 109.47253 * 120.00072 * 2 1 3 13 13 C 1.46506 * 119.99741 * 64.46212 * 12 2 1 14 14 S 1.65600 * 119.99956 * 244.46719 * 12 2 1 15 15 O 1.42101 * 106.40095 * 151.74515 * 14 12 2 16 16 O 1.42098 * 106.40325 * 18.82199 * 14 12 2 17 17 N 1.65602 * 107.21643 * 265.28289 * 14 12 2 18 18 C 1.46498 * 120.00045 * 94.86316 * 17 14 12 19 19 C 1.46498 * 119.99806 * 274.86826 * 17 14 12 20 20 C 1.53001 * 109.46828 * 266.61149 * 19 17 14 21 21 H 1.09002 * 110.33348 * 65.74802 * 20 19 17 22 22 C 1.54909 * 110.37501 * 188.00178 * 20 19 17 23 23 C 1.55257 * 101.60069 * 155.81523 * 22 20 19 24 24 C 1.54319 * 103.08484 * 324.48887 * 23 22 20 25 25 N 1.47439 * 107.23224 * 22.20449 * 24 23 22 26 26 C 1.46903 * 110.99899 * 123.25805 * 25 24 23 27 27 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47379 * 299.99976 * 1 2 3 29 29 H 1.09002 * 109.47291 * 60.00421 * 1 2 3 30 30 H 0.97003 * 119.99568 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46693 * 270.00370 * 13 12 2 32 32 H 1.08994 * 109.47078 * 30.00068 * 13 12 2 33 33 H 1.08997 * 109.46651 * 150.00352 * 13 12 2 34 34 H 1.09001 * 109.47524 * 269.99889 * 18 17 14 35 35 H 1.08999 * 109.46843 * 30.00190 * 18 17 14 36 36 H 1.08998 * 109.47051 * 150.00098 * 18 17 14 37 37 H 1.08991 * 109.47669 * 26.61128 * 19 17 14 38 38 H 1.09001 * 109.47300 * 146.61373 * 19 17 14 39 39 H 1.08996 * 110.99350 * 273.99380 * 22 20 19 40 40 H 1.09004 * 110.99141 * 37.80854 * 22 20 19 41 41 H 1.09001 * 110.74382 * 206.05108 * 23 22 20 42 42 H 1.08998 * 110.75446 * 82.93274 * 23 22 20 43 43 H 1.09000 * 109.88892 * 262.79479 * 24 23 22 44 44 H 1.09001 * 109.88480 * 141.61106 * 24 23 22 45 45 H 1.09007 * 109.46967 * 304.78224 * 26 25 24 46 46 H 1.08996 * 109.47617 * 64.78299 * 26 25 24 47 47 H 1.09007 * 109.47045 * 184.78681 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5789 -1.6369 -1.1338 6 6 1.7942 -0.1776 -2.4796 7 7 1.1290 0.9508 -2.5973 8 14 2.4175 -1.0579 -4.0048 9 1 1.3823 -2.0077 -4.4859 10 1 2.7074 -0.0618 -5.0674 11 1 3.6581 -1.8037 -3.6736 12 7 2.0183 -0.6906 1.1962 13 6 1.7468 -2.1186 1.3797 14 16 2.8771 0.1428 2.3408 15 8 2.6389 -0.5140 3.5782 16 8 2.6008 1.5200 2.1260 17 7 4.4836 -0.0705 1.9999 18 6 5.2009 0.9248 1.1993 19 6 5.1873 -1.2546 2.4989 20 6 5.8537 -0.9258 3.8363 21 1 5.0988 -0.7211 4.5955 22 6 6.7671 -2.0937 4.2853 23 6 7.7713 -1.3639 5.2177 24 6 7.9483 0.0085 4.5347 25 7 6.7619 0.2314 3.6883 26 6 6.0836 1.4828 4.0516 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 0.9618 1.3258 -3.4761 31 1 0.8052 -2.2435 1.9144 32 1 1.6788 -2.6036 0.4060 33 1 2.5543 -2.5708 1.9554 34 1 5.1294 0.6622 0.1438 35 1 4.7583 1.9078 1.3600 36 1 6.2489 0.9449 1.4985 37 1 4.4759 -2.0685 2.6379 38 1 5.9478 -1.5558 1.7784 39 1 6.1988 -2.8456 4.8328 40 1 7.2798 -2.5385 3.4324 41 1 8.7198 -1.8995 5.2581 42 1 7.3542 -1.2458 6.2178 43 1 8.8476 0.0029 3.9188 44 1 8.0180 0.7919 5.2893 45 1 5.8413 1.4694 5.1143 46 1 6.7397 2.3267 3.8391 47 1 5.1662 1.5806 3.4710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000420732237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:02 Heat of formation + Delta-G solvation = -59.194418 kcal Electronic energy + Delta-G solvation = -27637.567566 eV Core-core repulsion = 23982.673113 eV Total energy + Delta-G solvation = -3654.894453 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.38209 -36.69473 -36.09990 -35.52758 -35.18910 -32.55385 -32.20926 -30.15951 -29.14316 -26.73739 -25.46528 -25.27768 -25.18372 -23.66154 -21.24042 -20.71001 -20.32335 -18.19900 -17.04367 -16.94860 -16.36571 -16.24607 -15.71697 -15.53188 -14.84767 -14.17412 -14.15954 -13.81334 -13.48372 -13.33558 -13.15226 -13.03776 -12.77071 -12.66528 -12.32359 -11.93024 -11.91124 -11.76037 -11.51040 -11.42432 -11.39538 -11.37833 -11.20381 -11.19389 -11.04758 -10.97797 -10.81837 -10.79676 -10.65316 -10.47370 -10.23201 -10.03620 -9.24124 -8.76945 -8.48378 -8.20240 -7.91016 -6.08736 -4.15844 1.26576 3.25563 3.33085 3.34618 3.49993 3.91485 4.11267 4.36960 4.51237 4.57528 4.82928 4.97462 5.07642 5.21762 5.23881 5.29567 5.38903 5.43973 5.46430 5.60848 5.64020 5.70980 5.75553 5.77226 5.87830 5.95018 6.03977 6.11035 6.17825 6.19589 6.32148 6.43413 6.49755 6.66925 6.82768 6.86397 6.94413 7.00026 7.06240 7.11738 7.50386 7.62841 7.79814 8.01497 8.26978 8.87323 9.49974 10.97897 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.004475 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.833377 B = 6256.157324 C = 6677.472244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.267 3.733 3 H 0.063 0.937 4 C -0.524 4.524 5 H 0.063 0.937 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.896 3.104 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 N -0.991 5.991 13 C 0.106 3.894 14 S 2.776 3.224 15 O -0.999 6.999 16 O -0.980 6.980 17 N -1.003 6.003 18 C 0.088 3.912 19 C 0.148 3.852 20 C 0.047 3.953 21 H 0.066 0.934 22 C -0.122 4.122 23 C -0.141 4.141 24 C 0.041 3.959 25 N -0.521 5.521 26 C 0.015 3.985 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.083 0.917 30 H 0.264 0.736 31 H 0.042 0.958 32 H 0.081 0.919 33 H 0.045 0.955 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.085 0.915 37 H 0.076 0.924 38 H 0.082 0.918 39 H 0.076 0.924 40 H 0.078 0.922 41 H 0.073 0.927 42 H 0.064 0.936 43 H 0.076 0.924 44 H 0.052 0.948 45 H 0.024 0.976 46 H 0.069 0.931 47 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.585 -4.534 11.747 17.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.164 3.836 3 H 0.080 0.920 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.723 3.277 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 N -0.833 5.833 13 C -0.040 4.040 14 S 2.786 3.214 15 O -0.983 6.983 16 O -0.964 6.964 17 N -0.840 5.840 18 C -0.057 4.057 19 C 0.021 3.979 20 C -0.063 4.063 21 H 0.084 0.916 22 C -0.161 4.161 23 C -0.180 4.180 24 C -0.087 4.087 25 N -0.245 5.245 26 C -0.133 4.133 27 H 0.052 0.948 28 H 0.032 0.968 29 H 0.102 0.898 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.099 0.901 33 H 0.064 0.936 34 H 0.073 0.927 35 H 0.090 0.910 36 H 0.104 0.896 37 H 0.094 0.906 38 H 0.100 0.900 39 H 0.094 0.906 40 H 0.097 0.903 41 H 0.092 0.908 42 H 0.083 0.917 43 H 0.094 0.906 44 H 0.070 0.930 45 H 0.042 0.958 46 H 0.087 0.913 47 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 11.317 -3.804 11.791 16.781 hybrid contribution 0.159 -0.695 -0.409 0.822 sum 11.477 -4.499 11.383 16.779 Atomic orbital electron populations 1.22027 0.98386 0.99472 1.00262 1.18724 0.91390 0.93116 0.80361 0.91957 1.21329 1.35895 1.08820 0.90275 0.91874 1.24928 0.95055 0.94889 0.98953 1.69921 1.39885 1.18672 1.23988 0.86547 0.79147 0.79328 0.82631 1.20706 1.21196 1.19930 1.57791 1.68322 1.18692 1.38534 1.21205 0.99059 0.81594 1.02157 1.02059 0.72624 0.73428 0.73338 1.93527 1.84893 1.77174 1.42669 1.93563 1.83791 1.32632 1.86427 1.57775 1.28137 1.31222 1.66907 1.21622 0.98499 0.90753 0.94835 1.21132 0.96495 0.86438 0.93849 1.23202 0.94697 0.90418 0.97945 0.91612 1.22723 0.96860 0.97036 0.99508 1.22777 0.99899 0.96454 0.98853 1.22855 0.94735 0.96207 0.94929 1.63428 1.06479 1.02269 1.52360 1.22705 0.99957 0.92115 0.98558 0.94807 0.96849 0.89808 0.92656 0.93965 0.90085 0.93599 0.92675 0.91040 0.89622 0.90618 0.89979 0.90579 0.90287 0.90824 0.91681 0.90556 0.92965 0.95781 0.91262 0.90976 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.42 9.09 37.15 0.34 -3.08 16 2 C 0.27 6.60 2.51 -69.08 -0.17 6.43 16 3 H 0.06 1.72 6.87 -51.93 -0.36 1.36 16 4 C -0.52 -13.44 8.01 -34.44 -0.28 -13.72 16 5 H 0.06 1.57 6.82 -52.49 -0.36 1.22 16 6 C 0.06 1.70 5.32 -17.82 -0.09 1.61 16 7 N -0.89 -24.51 11.73 55.43 0.65 -23.86 16 8 Si 0.90 20.38 29.54 -169.99 -5.02 15.35 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.29 -6.54 7.11 56.52 0.40 -6.14 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 N -0.99 -20.96 3.12 -115.85 -0.36 -21.32 16 13 C 0.11 1.91 9.45 59.85 0.57 2.48 16 14 S 2.78 55.93 5.84 -107.50 -0.63 55.31 16 15 O -1.00 -20.52 16.35 -57.17 -0.93 -21.45 16 16 O -0.98 -22.72 15.14 -57.17 -0.87 -23.59 16 17 N -1.00 -16.63 2.16 -121.76 -0.26 -16.89 16 18 C 0.09 1.40 8.65 59.85 0.52 1.92 16 19 C 0.15 2.03 5.13 -4.04 -0.02 2.01 16 20 C 0.05 0.60 2.81 -66.19 -0.19 0.41 16 21 H 0.07 0.96 7.60 -51.93 -0.39 0.57 16 22 C -0.12 -1.18 6.51 -24.53 -0.16 -1.34 16 23 C -0.14 -1.22 6.94 -24.84 -0.17 -1.39 16 24 C 0.04 0.39 6.90 -2.84 -0.02 0.37 16 25 N -0.52 -6.32 3.70 -231.59 -0.86 -7.17 16 26 C 0.02 0.19 8.06 60.07 0.48 0.68 16 27 H 0.03 0.75 7.78 -51.93 -0.40 0.35 16 28 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 29 H 0.08 2.17 6.52 -51.93 -0.34 1.84 16 30 H 0.26 6.95 8.31 -40.82 -0.34 6.61 16 31 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.08 1.47 6.59 -51.93 -0.34 1.13 16 33 H 0.05 0.70 6.78 -51.93 -0.35 0.35 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.20 6.78 -51.93 -0.35 0.85 16 36 H 0.09 1.18 6.33 -51.93 -0.33 0.85 16 37 H 0.08 1.00 6.67 -51.93 -0.35 0.66 16 38 H 0.08 1.03 8.02 -51.93 -0.42 0.61 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.25 16 40 H 0.08 0.71 8.00 -51.93 -0.42 0.29 16 41 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 42 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 43 H 0.08 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.05 0.48 7.56 -51.93 -0.39 0.09 16 45 H 0.02 0.29 8.10 -51.93 -0.42 -0.13 16 46 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.07 5.17 -51.93 -0.27 0.81 16 LS Contribution 367.29 15.07 5.54 5.54 Total: -1.00 -30.39 367.29 -9.95 -40.34 By element: Atomic # 1 Polarization: 9.38 SS G_CDS: -8.00 Total: 1.37 kcal Atomic # 6 Polarization: -4.43 SS G_CDS: 0.80 Total: -3.62 kcal Atomic # 7 Polarization: -68.41 SS G_CDS: -0.83 Total: -69.24 kcal Atomic # 8 Polarization: -43.24 SS G_CDS: -1.80 Total: -45.04 kcal Atomic # 14 Polarization: 20.38 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 16 Polarization: 55.93 SS G_CDS: -0.63 Total: 55.31 kcal Total LS contribution 5.54 Total: 5.54 kcal Total: -30.39 -9.95 -40.34 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420732237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.856 kcal (2) G-P(sol) polarization free energy of solvation -30.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.338 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.194 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds