Wall clock time and date at job start Fri Apr 10 2020 18:19:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.08999 * 109.47177 * 2 1 4 4 C 1.50704 * 109.47326 * 239.99858 * 2 1 3 5 5 H 1.07996 * 120.00173 * 245.43703 * 4 2 1 6 6 C 1.37877 * 119.99753 * 65.43777 * 4 2 1 7 7 N 1.31512 * 119.99893 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99843 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.46932 * 90.00696 * 8 6 4 10 10 H 1.48504 * 109.47196 * 209.99969 * 8 6 4 11 11 H 1.48494 * 109.47346 * 330.00489 * 8 6 4 12 12 N 1.46506 * 109.47253 * 120.00072 * 2 1 3 13 13 C 1.46506 * 119.99741 * 64.46212 * 12 2 1 14 14 S 1.65600 * 119.99956 * 244.46719 * 12 2 1 15 15 O 1.42101 * 106.40095 * 151.74515 * 14 12 2 16 16 O 1.42098 * 106.40325 * 18.82199 * 14 12 2 17 17 N 1.65602 * 107.21643 * 265.28289 * 14 12 2 18 18 C 1.46498 * 120.00045 * 94.86316 * 17 14 12 19 19 C 1.46498 * 119.99806 * 274.86826 * 17 14 12 20 20 C 1.53001 * 109.46828 * 266.61149 * 19 17 14 21 21 H 1.09002 * 110.33348 * 65.74802 * 20 19 17 22 22 C 1.54909 * 110.37501 * 188.00178 * 20 19 17 23 23 C 1.55257 * 101.60069 * 155.81523 * 22 20 19 24 24 C 1.54319 * 103.08484 * 324.48887 * 23 22 20 25 25 N 1.47439 * 107.23224 * 22.20449 * 24 23 22 26 26 C 1.46903 * 110.99899 * 123.25805 * 25 24 23 27 27 H 1.08999 * 109.47177 * 179.97438 * 1 2 3 28 28 H 1.08993 * 109.47379 * 299.99976 * 1 2 3 29 29 H 1.09002 * 109.47291 * 60.00421 * 1 2 3 30 30 H 0.97003 * 119.99568 * 179.97438 * 7 6 4 31 31 H 1.08998 * 109.46693 * 270.00370 * 13 12 2 32 32 H 1.08994 * 109.47078 * 30.00068 * 13 12 2 33 33 H 1.08997 * 109.46651 * 150.00352 * 13 12 2 34 34 H 1.09001 * 109.47524 * 269.99889 * 18 17 14 35 35 H 1.08999 * 109.46843 * 30.00190 * 18 17 14 36 36 H 1.08998 * 109.47051 * 150.00098 * 18 17 14 37 37 H 1.08991 * 109.47669 * 26.61128 * 19 17 14 38 38 H 1.09001 * 109.47300 * 146.61373 * 19 17 14 39 39 H 1.08996 * 110.99350 * 273.99380 * 22 20 19 40 40 H 1.09004 * 110.99141 * 37.80854 * 22 20 19 41 41 H 1.09001 * 110.74382 * 206.05108 * 23 22 20 42 42 H 1.08998 * 110.75446 * 82.93274 * 23 22 20 43 43 H 1.09000 * 109.88892 * 262.79479 * 24 23 22 44 44 H 1.09001 * 109.88480 * 141.61106 * 24 23 22 45 45 H 1.09007 * 109.46967 * 304.78224 * 26 25 24 46 46 H 1.08996 * 109.47617 * 64.78299 * 26 25 24 47 47 H 1.09007 * 109.47045 * 184.78681 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.5789 -1.6369 -1.1338 6 6 1.7942 -0.1776 -2.4796 7 7 1.1290 0.9508 -2.5973 8 14 2.4175 -1.0579 -4.0048 9 1 1.3823 -2.0077 -4.4859 10 1 2.7074 -0.0618 -5.0674 11 1 3.6581 -1.8037 -3.6736 12 7 2.0183 -0.6906 1.1962 13 6 1.7468 -2.1186 1.3797 14 16 2.8771 0.1428 2.3408 15 8 2.6389 -0.5140 3.5782 16 8 2.6008 1.5200 2.1260 17 7 4.4836 -0.0705 1.9999 18 6 5.2009 0.9248 1.1993 19 6 5.1873 -1.2546 2.4989 20 6 5.8537 -0.9258 3.8363 21 1 5.0988 -0.7211 4.5955 22 6 6.7671 -2.0937 4.2853 23 6 7.7713 -1.3639 5.2177 24 6 7.9483 0.0085 4.5347 25 7 6.7619 0.2314 3.6883 26 6 6.0836 1.4828 4.0516 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8900 30 1 0.9618 1.3258 -3.4761 31 1 0.8052 -2.2435 1.9144 32 1 1.6788 -2.6036 0.4060 33 1 2.5543 -2.5708 1.9554 34 1 5.1294 0.6622 0.1438 35 1 4.7583 1.9078 1.3600 36 1 6.2489 0.9449 1.4985 37 1 4.4759 -2.0685 2.6379 38 1 5.9478 -1.5558 1.7784 39 1 6.1988 -2.8456 4.8328 40 1 7.2798 -2.5385 3.4324 41 1 8.7198 -1.8995 5.2581 42 1 7.3542 -1.2458 6.2178 43 1 8.8476 0.0029 3.9188 44 1 8.0180 0.7919 5.2893 45 1 5.8413 1.4694 5.1143 46 1 6.7397 2.3267 3.8391 47 1 5.1662 1.5806 3.4710 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000420732237.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:01 Heat of formation + Delta-G solvation = -79.567306 kcal Electronic energy + Delta-G solvation = -27638.451001 eV Core-core repulsion = 23982.673113 eV Total energy + Delta-G solvation = -3655.777888 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.29833 -38.38299 -37.87421 -36.92808 -36.69806 -34.47336 -33.08479 -31.14837 -31.00597 -27.79593 -27.20952 -27.03615 -26.30978 -24.83158 -22.59789 -21.97811 -21.31825 -19.74893 -18.63227 -18.48787 -18.18686 -17.38953 -17.14587 -16.54445 -16.52750 -15.67030 -15.16792 -15.12036 -14.85640 -14.82194 -14.52520 -14.28156 -14.09321 -13.76384 -13.66929 -13.58222 -13.43993 -13.29100 -13.19306 -12.99088 -12.82713 -12.62037 -12.60372 -12.59911 -12.35929 -12.28776 -12.15980 -12.06938 -12.00685 -11.92279 -11.76569 -11.50780 -11.13868 -10.50171 -10.03512 -9.64504 -9.19046 -8.08717 -6.22461 -0.32358 1.47151 1.48528 1.57855 1.99731 2.46800 2.54949 3.00704 3.21626 3.37588 3.69762 3.74243 3.93157 4.07986 4.16203 4.30325 4.35396 4.42668 4.49316 4.54104 4.66699 4.69727 4.75807 4.77408 4.87197 4.90946 4.92472 4.93937 4.99345 5.02770 5.07432 5.10516 5.12293 5.20359 5.23776 5.27250 5.39606 5.54914 5.61623 5.74743 5.88522 6.04438 6.08784 6.13895 6.29054 6.87063 7.47026 8.97866 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.018334 B = 0.004475 C = 0.004192 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.833377 B = 6256.157324 C = 6677.472244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.273 3.727 3 H 0.025 0.975 4 C -0.527 4.527 5 H 0.071 0.929 6 C 0.016 3.984 7 N -0.921 5.921 8 Si 0.960 3.040 9 H -0.276 1.276 10 H -0.289 1.289 11 H -0.264 1.264 12 N -0.999 5.999 13 C 0.099 3.901 14 S 2.785 3.215 15 O -1.004 7.004 16 O -1.017 7.017 17 N -0.995 5.995 18 C 0.095 3.905 19 C 0.139 3.861 20 C 0.045 3.955 21 H 0.041 0.959 22 C -0.117 4.117 23 C -0.136 4.136 24 C 0.038 3.962 25 N -0.527 5.527 26 C 0.015 3.985 27 H 0.047 0.953 28 H 0.017 0.983 29 H 0.061 0.939 30 H 0.263 0.737 31 H 0.050 0.950 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.044 0.956 35 H 0.055 0.945 36 H 0.110 0.890 37 H 0.081 0.919 38 H 0.100 0.900 39 H 0.084 0.916 40 H 0.091 0.909 41 H 0.094 0.906 42 H 0.063 0.937 43 H 0.087 0.913 44 H 0.056 0.944 45 H 0.023 0.977 46 H 0.083 0.917 47 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.723 -6.681 12.091 19.471 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.168 3.832 3 H 0.043 0.957 4 C -0.566 4.566 5 H 0.089 0.911 6 C -0.184 4.184 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.189 1.189 12 N -0.841 5.841 13 C -0.047 4.047 14 S 2.795 3.205 15 O -0.988 6.988 16 O -1.001 7.001 17 N -0.835 5.835 18 C -0.050 4.050 19 C 0.014 3.986 20 C -0.066 4.066 21 H 0.059 0.941 22 C -0.156 4.156 23 C -0.174 4.174 24 C -0.090 4.090 25 N -0.252 5.252 26 C -0.134 4.134 27 H 0.066 0.934 28 H 0.036 0.964 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.098 0.902 33 H 0.093 0.907 34 H 0.063 0.937 35 H 0.074 0.926 36 H 0.128 0.872 37 H 0.100 0.900 38 H 0.119 0.881 39 H 0.103 0.897 40 H 0.109 0.891 41 H 0.113 0.887 42 H 0.082 0.918 43 H 0.105 0.895 44 H 0.074 0.926 45 H 0.041 0.959 46 H 0.102 0.898 47 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 13.455 -5.981 12.161 19.098 hybrid contribution -0.464 -0.017 -0.432 0.634 sum 12.992 -5.998 11.729 18.503 Atomic orbital electron populations 1.21926 0.98304 0.99992 0.99361 1.18383 0.91477 0.91649 0.81672 0.95683 1.21575 1.35486 1.08909 0.90627 0.91060 1.25710 0.95277 0.95488 1.01896 1.70062 1.41207 1.20180 1.24519 0.85533 0.78913 0.78114 0.78884 1.20213 1.21524 1.18852 1.57721 1.69077 1.19971 1.37300 1.21427 1.00727 0.79825 1.02701 1.01603 0.73342 0.72454 0.73060 1.93510 1.85474 1.77024 1.42760 1.93509 1.84788 1.35002 1.86827 1.57517 1.26715 1.32366 1.66944 1.21603 0.99478 0.89839 0.94077 1.21459 0.96904 0.85292 0.94974 1.23164 0.94875 0.92085 0.96429 0.94073 1.22738 0.96534 0.96077 1.00242 1.22771 1.00595 0.95705 0.98338 1.22948 0.93834 0.97124 0.95068 1.63424 1.06863 1.01683 1.53216 1.22673 0.99341 0.93299 0.98043 0.93436 0.96427 0.92032 0.92781 0.93182 0.90243 0.90723 0.93742 0.92600 0.87177 0.90036 0.88140 0.89749 0.89066 0.88707 0.91801 0.89479 0.92572 0.95863 0.89812 0.93545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.67 9.09 71.98 0.65 -6.01 16 2 C 0.27 13.70 2.51 44.24 0.11 13.81 16 3 H 0.03 1.45 6.87 -2.39 -0.02 1.44 16 4 C -0.53 -26.94 8.01 25.60 0.20 -26.74 16 5 H 0.07 3.46 6.82 -2.91 -0.02 3.44 16 6 C 0.02 0.84 5.32 84.66 0.45 1.29 16 7 N -0.92 -51.85 11.73 21.45 0.25 -51.60 16 8 Si 0.96 41.42 29.54 68.60 2.03 43.45 16 9 H -0.28 -11.66 7.11 99.48 0.71 -10.96 16 10 H -0.29 -12.54 7.11 99.48 0.71 -11.84 16 11 H -0.26 -10.88 7.11 99.48 0.71 -10.17 16 12 N -1.00 -42.11 3.12 -520.43 -1.62 -43.74 16 13 C 0.10 3.39 9.45 127.77 1.21 4.60 16 14 S 2.78 113.20 5.84 -56.49 -0.33 112.87 16 15 O -1.00 -40.94 16.35 -128.00 -2.09 -43.03 16 16 O -1.02 -48.99 15.14 -128.00 -1.94 -50.92 16 17 N -1.00 -32.53 2.16 -539.15 -1.16 -33.70 16 18 C 0.10 3.02 8.65 127.77 1.10 4.13 16 19 C 0.14 3.57 5.13 86.38 0.44 4.01 16 20 C 0.04 1.05 2.81 45.39 0.13 1.18 16 21 H 0.04 1.17 7.60 -2.39 -0.02 1.15 16 22 C -0.12 -1.91 6.51 32.02 0.21 -1.70 16 23 C -0.14 -1.91 6.94 31.82 0.22 -1.69 16 24 C 0.04 0.63 6.90 86.65 0.60 1.23 16 25 N -0.53 -11.82 3.70 -886.63 -3.28 -15.10 16 26 C 0.02 0.38 8.06 127.69 1.03 1.41 16 27 H 0.05 2.13 7.78 -2.39 -0.02 2.11 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.06 3.28 6.52 -2.39 -0.02 3.26 16 30 H 0.26 14.13 8.31 -92.71 -0.77 13.36 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 2.76 6.59 -2.39 -0.02 2.74 16 33 H 0.07 2.10 6.78 -2.39 -0.02 2.09 16 34 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.06 1.94 6.78 -2.39 -0.02 1.93 16 36 H 0.11 2.91 6.33 -2.39 -0.02 2.90 16 37 H 0.08 1.98 6.67 -2.39 -0.02 1.96 16 38 H 0.10 2.23 8.02 -2.39 -0.02 2.21 16 39 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 40 H 0.09 1.29 8.00 -2.38 -0.02 1.27 16 41 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 42 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 43 H 0.09 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.06 0.90 7.56 -2.39 -0.02 0.88 16 45 H 0.02 0.56 8.10 -2.38 -0.02 0.54 16 46 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 47 H 0.05 1.39 5.17 -2.38 -0.01 1.38 16 Total: -1.00 -65.73 367.29 -0.85 -66.58 By element: Atomic # 1 Polarization: 18.73 SS G_CDS: 0.94 Total: 19.67 kcal Atomic # 6 Polarization: -10.85 SS G_CDS: 6.36 Total: -4.49 kcal Atomic # 7 Polarization: -138.31 SS G_CDS: -5.82 Total: -144.13 kcal Atomic # 8 Polarization: -89.92 SS G_CDS: -4.03 Total: -93.96 kcal Atomic # 14 Polarization: 41.42 SS G_CDS: 2.03 Total: 43.45 kcal Atomic # 16 Polarization: 113.20 SS G_CDS: -0.33 Total: 112.87 kcal Total: -65.73 -0.85 -66.58 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000420732237.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.983 kcal (2) G-P(sol) polarization free energy of solvation -65.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.584 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds