Wall clock time and date at job start Fri Apr 10 2020 18:19:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08993 * 109.46272 * 2 1 4 4 C 1.53046 * 109.45632 * 240.03044 * 2 1 3 5 5 C 1.53187 * 109.33885 * 178.59874 * 4 2 1 6 6 H 1.09003 * 109.58587 * 294.86559 * 5 4 2 7 7 C 1.52998 * 109.59029 * 174.43744 * 5 4 2 8 8 N 1.47000 * 108.74007 * 54.62362 * 5 4 2 9 9 S 1.65594 * 120.61669 * 126.38908 * 8 5 4 10 10 O 1.42098 * 106.40236 * 196.37353 * 9 8 5 11 11 O 1.42096 * 106.40259 * 329.28900 * 9 8 5 12 12 N 1.65600 * 107.21952 * 82.83457 * 9 8 5 13 13 C 1.46499 * 120.00020 * 84.07150 * 12 9 8 14 14 C 1.46504 * 119.99665 * 264.06882 * 12 9 8 15 15 C 1.50708 * 109.46843 * 95.00155 * 14 12 9 16 16 H 1.07998 * 119.99539 * 359.97438 * 15 14 12 17 17 C 1.37878 * 119.99874 * 179.97438 * 15 14 12 18 18 N 1.31507 * 119.99587 * 179.97438 * 17 15 14 19 19 Si 1.86796 * 120.00117 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47305 * 89.99625 * 19 17 15 21 21 H 1.48494 * 109.47081 * 210.00067 * 19 17 15 22 22 H 1.48504 * 109.46822 * 329.99873 * 19 17 15 23 23 C 1.46926 * 118.75091 * 306.40762 * 8 5 4 24 24 C 1.53032 * 109.45992 * 119.96416 * 2 1 3 25 25 H 1.09007 * 109.50135 * 61.40336 * 24 2 1 26 26 C 1.52997 * 109.49839 * 301.33094 * 24 2 1 27 27 N 1.46906 * 109.47320 * 175.00294 * 26 24 2 28 28 H 1.08998 * 109.47207 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46533 * 299.96802 * 1 2 3 30 30 H 1.08992 * 109.46981 * 59.96698 * 1 2 3 31 31 H 1.08996 * 109.49691 * 298.56295 * 4 2 1 32 32 H 1.08997 * 109.50062 * 58.62928 * 4 2 1 33 33 H 1.09001 * 109.47012 * 68.77260 * 7 5 4 34 34 H 1.08991 * 109.47554 * 188.77852 * 7 5 4 35 35 H 1.09000 * 109.46951 * 308.78378 * 7 5 4 36 36 H 1.09000 * 109.46657 * 84.95983 * 13 12 9 37 37 H 1.09000 * 109.46417 * 204.95421 * 13 12 9 38 38 H 1.08998 * 109.47271 * 324.95792 * 13 12 9 39 39 H 1.08997 * 109.47381 * 214.99689 * 14 12 9 40 40 H 1.08998 * 109.47260 * 335.00744 * 14 12 9 41 41 H 0.97003 * 119.99770 * 180.02562 * 18 17 15 42 42 H 1.08999 * 109.59215 * 293.82139 * 23 8 5 43 43 H 1.09001 * 109.58705 * 173.39154 * 23 8 5 44 44 H 1.08996 * 109.47273 * 295.00086 * 26 24 2 45 45 H 1.09001 * 109.47278 * 55.00517 * 26 24 2 46 46 H 1.00898 * 111.00115 * 56.04336 * 27 26 24 47 47 H 1.00896 * 111.00384 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 6 2.0398 -0.7209 -1.2501 5 6 3.5713 -0.6888 -1.2652 6 1 3.9142 0.3408 -1.3683 7 6 4.0904 -1.5251 -2.4364 8 7 4.0679 -1.2490 -0.0001 9 16 5.1657 -2.4887 -0.0001 10 8 5.1444 -3.0436 1.3079 11 8 4.9104 -3.2508 -1.1718 12 7 6.6656 -1.8152 -0.1978 13 6 7.3930 -1.2935 0.9620 14 6 7.2652 -1.7412 -1.5325 15 6 6.9753 -0.3925 -2.1393 16 1 6.4015 0.3364 -1.5861 17 6 7.4426 -0.0891 -3.4005 18 7 7.1892 1.0876 -3.9301 19 14 8.4344 -1.3501 -4.3573 20 1 7.5167 -2.1888 -5.1696 21 1 9.3902 -0.6514 -5.2536 22 1 9.1846 -2.2126 -3.4094 23 6 3.5715 -0.6886 1.2641 24 6 2.0399 -0.7207 1.2500 25 1 1.6974 -1.7555 1.2386 26 6 1.5029 -0.0187 2.4989 27 7 1.8930 -0.7789 3.6939 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3632 0.5134 0.8903 30 1 -0.3633 0.5143 -0.8896 31 1 1.6978 -1.7557 -1.2382 32 1 1.6567 -0.2213 -2.1399 33 1 3.8420 -1.0296 -3.3750 34 1 5.1723 -1.6304 -2.3564 35 1 3.6266 -2.5112 -2.4124 36 1 7.9356 -2.1056 1.4458 37 1 8.0982 -0.5295 0.6348 38 1 6.6863 -0.8573 1.6679 39 1 8.3434 -1.8804 -1.4547 40 1 6.8425 -2.5223 -2.1645 41 1 7.5176 1.3009 -4.8175 42 1 3.9144 0.3409 1.3672 43 1 3.9417 -1.2845 2.0983 44 1 1.9180 0.9875 2.5570 45 1 0.4158 0.0393 2.4441 46 1 2.8936 -0.9022 3.7334 47 1 1.5496 -0.3356 4.5327 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000422557182.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Fri Apr 10 2020 18:19:05 Heat of formation + Delta-G solvation = -66.681519 kcal Electronic energy + Delta-G solvation = -28136.386939 eV Core-core repulsion = 24481.167820 eV Total energy + Delta-G solvation = -3655.219118 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 319.172 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -39.27044 -37.05477 -35.73327 -35.30568 -35.11011 -33.42946 -32.49207 -31.34825 -28.53190 -27.79051 -26.63151 -25.20599 -24.27386 -22.02485 -21.83446 -21.13795 -19.78936 -18.24881 -17.24816 -16.95583 -16.69870 -15.96911 -15.57787 -15.24003 -14.76269 -14.38742 -14.25462 -13.96436 -13.84573 -13.59702 -13.34811 -13.05692 -12.93473 -12.54619 -12.43927 -12.25672 -12.17954 -11.92318 -11.82770 -11.57566 -11.45997 -11.35295 -11.24707 -11.01691 -10.84459 -10.71545 -10.61678 -10.35002 -10.29087 -10.19114 -9.97108 -9.63337 -9.47869 -8.79243 -8.68418 -8.54805 -8.09350 -6.18997 -4.17893 1.23833 3.24243 3.30906 3.34811 3.43892 4.08914 4.32617 4.41451 4.73523 4.77767 4.87026 4.97010 5.12070 5.17297 5.27498 5.39951 5.44073 5.49572 5.58362 5.64416 5.73283 5.79419 5.81025 5.92061 5.94988 5.98613 6.10891 6.14350 6.21469 6.23671 6.29862 6.38844 6.46372 6.57590 6.65388 6.78020 6.98153 7.02872 7.05026 7.11491 7.31341 7.40455 7.43346 7.54421 8.37692 8.84662 9.41426 10.92964 Molecular weight = 319.17amu Principal moments of inertia in cm(-1) A = 0.016967 B = 0.005424 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.825886 B = 5160.797111 C = 5909.860369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.085 4.085 3 H 0.071 0.929 4 C -0.121 4.121 5 C 0.165 3.835 6 H 0.076 0.924 7 C -0.190 4.190 8 N -0.997 5.997 9 S 2.785 3.215 10 O -0.999 6.999 11 O -0.974 6.974 12 N -0.994 5.994 13 C 0.108 3.892 14 C 0.210 3.790 15 C -0.537 4.537 16 H 0.082 0.918 17 C 0.079 3.921 18 N -0.890 5.890 19 Si 0.864 3.136 20 H -0.270 1.270 21 H -0.285 1.285 22 H -0.264 1.264 23 C 0.122 3.878 24 C -0.093 4.093 25 H 0.082 0.918 26 C 0.065 3.935 27 N -0.853 5.853 28 H 0.054 0.946 29 H 0.054 0.946 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.072 0.928 33 H 0.058 0.942 34 H 0.107 0.893 35 H 0.075 0.925 36 H 0.045 0.955 37 H 0.077 0.923 38 H 0.049 0.951 39 H 0.035 0.965 40 H 0.045 0.955 41 H 0.265 0.735 42 H 0.061 0.939 43 H 0.089 0.911 44 H 0.027 0.973 45 H 0.077 0.923 46 H 0.342 0.658 47 H 0.339 0.661 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.353 -0.339 10.181 13.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.104 4.104 3 H 0.089 0.911 4 C -0.160 4.160 5 C 0.059 3.941 6 H 0.094 0.906 7 C -0.247 4.247 8 N -0.836 5.836 9 S 2.795 3.205 10 O -0.984 6.984 11 O -0.958 6.958 12 N -0.835 5.835 13 C -0.039 4.039 14 C 0.086 3.914 15 C -0.576 4.576 16 H 0.100 0.900 17 C -0.124 4.124 18 N -0.528 5.528 19 Si 0.691 3.309 20 H -0.196 1.196 21 H -0.211 1.211 22 H -0.189 1.189 23 C -0.004 4.004 24 C -0.113 4.113 25 H 0.101 0.899 26 C -0.066 4.066 27 N -0.383 5.383 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.083 0.917 32 H 0.090 0.910 33 H 0.077 0.923 34 H 0.126 0.874 35 H 0.094 0.906 36 H 0.063 0.937 37 H 0.096 0.904 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.075 0.925 42 H 0.079 0.921 43 H 0.107 0.893 44 H 0.046 0.954 45 H 0.095 0.905 46 H 0.156 0.844 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.896 -1.753 9.792 14.031 hybrid contribution 1.178 0.996 -0.431 1.601 sum -8.718 -0.757 9.361 12.814 Atomic orbital electron populations 1.21893 0.95387 1.01798 1.01363 1.21086 0.95230 0.99612 0.94487 0.91068 1.22036 0.95899 1.00900 0.97193 1.20931 0.92462 0.98739 0.81961 0.90567 1.22941 1.06501 0.99178 0.96108 1.58155 1.58859 1.55453 1.11130 1.01857 0.72474 0.73716 0.72406 1.93509 1.87161 1.76573 1.41115 1.93668 1.84063 1.69810 1.48264 1.57509 1.34063 1.77306 1.14587 1.21211 0.97149 0.98837 0.86707 1.19682 0.94780 0.98480 0.78434 1.21374 1.35854 0.98981 1.01361 0.89996 1.24811 0.95402 0.95055 0.97178 1.69880 1.45463 1.20832 1.16588 0.87025 0.80927 0.82156 0.80811 1.19578 1.21054 1.18851 1.21400 0.93918 0.99134 0.85943 1.21540 0.95115 1.00998 0.93670 0.89930 1.21903 1.00686 0.94231 0.89782 1.58734 1.19314 1.55569 1.04717 0.92687 0.92706 0.92721 0.91685 0.90951 0.92311 0.87430 0.90586 0.93671 0.90436 0.93200 0.94672 0.93747 0.92498 0.92112 0.89290 0.95434 0.90462 0.84407 0.84936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.82 37.16 0.33 -1.14 16 2 C -0.09 -1.02 2.23 -90.58 -0.20 -1.22 16 3 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 4 C -0.12 -1.71 4.64 -26.61 -0.12 -1.83 16 5 C 0.16 2.86 3.52 -67.56 -0.24 2.62 16 6 H 0.08 1.41 8.14 -51.93 -0.42 0.99 16 7 C -0.19 -3.80 7.41 37.16 0.28 -3.52 16 8 N -1.00 -17.04 3.35 -106.42 -0.36 -17.40 16 9 S 2.78 54.93 5.65 -107.50 -0.61 54.32 16 10 O -1.00 -20.35 15.93 -57.18 -0.91 -21.26 16 11 O -0.97 -21.37 11.91 -57.18 -0.68 -22.05 16 12 N -0.99 -19.91 3.23 -123.05 -0.40 -20.30 16 13 C 0.11 1.79 10.27 59.85 0.61 2.41 16 14 C 0.21 4.77 3.72 -5.19 -0.02 4.75 16 15 C -0.54 -13.58 7.86 -34.44 -0.27 -13.85 16 16 H 0.08 2.22 8.06 -52.49 -0.42 1.80 16 17 C 0.08 2.10 5.47 -17.82 -0.10 2.01 16 18 N -0.89 -25.07 13.96 55.43 0.77 -24.29 16 19 Si 0.86 20.25 27.47 -169.99 -4.67 15.58 16 20 H -0.27 -6.34 7.11 56.52 0.40 -5.93 16 21 H -0.28 -6.65 7.11 56.52 0.40 -6.24 16 22 H -0.26 -5.93 6.54 56.52 0.37 -5.57 16 23 C 0.12 1.73 5.42 -3.71 -0.02 1.71 16 24 C -0.09 -1.15 2.09 -90.50 -0.19 -1.34 16 25 H 0.08 1.15 8.14 -51.92 -0.42 0.73 16 26 C 0.07 0.66 6.00 -3.82 -0.02 0.64 16 27 N -0.85 -8.51 9.62 -10.37 -0.10 -8.61 16 28 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.48 6.29 -51.93 -0.33 0.15 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.06 0.93 8.13 -51.93 -0.42 0.51 16 32 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 33 H 0.06 1.15 8.14 -51.93 -0.42 0.72 16 34 H 0.11 2.44 2.00 -51.93 -0.10 2.33 16 35 H 0.08 1.51 6.47 -51.93 -0.34 1.18 16 36 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.08 1.28 8.03 -51.93 -0.42 0.86 16 38 H 0.05 0.73 8.09 -51.93 -0.42 0.31 16 39 H 0.04 0.79 7.17 -51.93 -0.37 0.42 16 40 H 0.04 1.05 5.63 -51.93 -0.29 0.76 16 41 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 42 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 43 H 0.09 1.26 5.58 -51.93 -0.29 0.97 16 44 H 0.03 0.26 8.14 -51.93 -0.42 -0.16 16 45 H 0.08 0.73 6.14 -51.93 -0.32 0.41 16 46 H 0.34 3.43 7.39 -39.29 -0.29 3.14 16 47 H 0.34 2.62 9.08 -39.29 -0.36 2.27 16 LS Contribution 357.08 15.07 5.38 5.38 Total: -1.00 -29.89 357.08 -9.29 -39.18 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -7.76 Total: 8.23 kcal Atomic # 6 Polarization: -8.81 SS G_CDS: 0.04 Total: -8.78 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -0.08 Total: -70.61 kcal Atomic # 8 Polarization: -41.71 SS G_CDS: -1.59 Total: -43.31 kcal Atomic # 14 Polarization: 20.25 SS G_CDS: -4.67 Total: 15.58 kcal Atomic # 16 Polarization: 54.93 SS G_CDS: -0.61 Total: 54.32 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -29.89 -9.29 -39.18 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000422557182.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.501 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.388 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds